BAC Information

Click to search

BAC

Clone NameB6Ng01-172F18
Chromosome7 (Build37)
Map Location 110,819,303 - 110,924,231
singlet/doubletdoublet
Overlap geneOlfr624, Olfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69
Upstream geneOlfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623
Downstream geneOlfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y, Olfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172F18.bB6Ng01-172F18.g
ACCGA000994GA000995
length1,1061,107
definitionB6Ng01-172F18.b B6Ng01-172F18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,923,191 - 110,924,231)(110,819,303 - 110,820,406)
sequence
gaattccttggtgcaagtttgatctttgccaccaggaaatctaatttctt
cttgttgtttcttctttgagtaccactatttaacaaactgtgaccaagat
cacatcaacaacccaccccacctcctggagtcctagcatttatatacccc
ctgaaaagtcctcagaattccaggcatcacacaatggtagtatctaccac
acccctgctagagcattaggcaaaacataatcagctgctgtggacaatct
gaaacagtgccatatcccatacctgggattaaaatgtaaacatattctta
ttagatttctttgttttataaaaaagccaaaattccaaaaatgtcgctac
atttcccctcttctgttttaaatcattgtgttgtgtgtaattcgaaatta
taaacagagacttttttttttttcatgaaataagtgctttttggctcagt
ggccaagtttttcagtccaattctaatctttttctgttttgatggtatcc
acaatttttcatttcctgtggaaatataaagaaatcctcgtctccaactt
ttgtgggcgtcgattctgatttagtggattttcaaaagggggagtatgaa
ttttgttgtggaacttttcagaggaaaatggagaatttgcgaagttggag
gaagtgagttagaaggagtttattttaatacatgcctgaaattccccaaa
atagggaaattttaaaacaaaaagtattccccgttcctgaggtccaacat
gaatttagcacaattgctatgtgccattgccctctgacaaggttcccata
gaccaccagagaccaccaagagtccaactcacatgcaaatcaaaaagtct
ttattcaagctcaggatcagaccctgcaacctctcctgcacagtggaagg
tgtggatggtgctgacctggtaacagccttgccttttatggtggcaggtg
agagactttccaacttggcagttacatgattggttgacattgcttggcac
acttttatggctactaatgatttcagtttgtgtaacaatggtgctagctt
atcatttaccttagttactaggattagagtgggtatttgacaggagaacc
tgtgat
gaattcccagcaccgtgtgcacagtagacagccccatgcataggtctgtg
agggctaacatggccaggaaatagaacatgggctggtgcagacttgactc
tgttcggattacatgaagtatcatgcagtttcccaggaacaccattgcat
agatggttgagaaaggaatggcaaagaagtagtagacttccaggccagga
aatccagtaagaacaaatctagaggtacttaagtttgacattaagaaaac
tgacttgatagaaagtacaaaatatttctggagggctattctgcagtaca
catgctatattctactttctaataataactatctgtttgaaaaaatatca
gtttccataaacagtgaaactgagacatgttccttggttgtacatcattg
cagaaacctatgcggacacaaacgtattcagacctagtgttataagaaac
aggaaagcagggagttttatgtcaaaacaataatgtctatgggctcaggg
gatgtagattgtctactgcacttctaagagtcagtcctagaggacatgaa
tgcttggtcacagtgatgtcatggttggcacactcctcagaagaatgtga
aacccatgggcaatttttgtcatttgtattacagagggacttttactgcc
ttcaagtcttaaatgatccctttggaaatagacatctgttttagaatata
aactactattgaaaaaagaatcaaagcaactttagttgaatctgtacttt
ttggtgagcactgtggtgcttagcttttatctaaattattcatttatata
aattatactttgtagttttctcaatctatatggtatatcttttatcaaat
cactttattgttatttttatgccctcacttgtagcataaaaaaaatccac
aaaggattttaaattgggtggttcagaaaaatgtatcgtatttttttctc
attggtgtgatgttccattttgaataaatttaggcatttgagaatgtggc
aacattgttggaatgtgcaacaatacaaagaaagcaatctgggcattgca
tcttatacgttctagcccatactgtattctctggacatctacttcgtaca
tagttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_110923191_110924231
seq2: B6Ng01-172F18.b_105_1137 (reverse)

seq1  ATCACA-GTTCTCCTGGTCAAATACCCACTCTATTCCTAGTAACTAAAGT  49
      |||||| |||||||| ||||||||||||||||| ||||||||||||| ||
seq2  ATCACAGGTTCTCCT-GTCAAATACCCACTCTAATCCTAGTAACTAAGGT  49

seq1  AAATTGATTAAGCTAGCAACCATTGTTTACACCAAACTGAAATCATTAGT  99
      ||| ||| ||||||||| ||||||| ||||| ||||||||||||||||||
seq2  AAA-TGA-TAAGCTAGC-ACCATTG-TTACA-CAAACTGAAATCATTAGT  94

seq1  AGCCAATAAAAGTGTGCCAAGCAAATGTCAACCAATCATGTAACTGCCAA  149
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCC-ATAAAAGTGTGCCAAGC-AATGTCAACCAATCATGTAACTGCCAA  142

seq1  GTTGGAAAGTCTCTCACCCTGCCACCATAAAAGGCAAGGCTGTTACCAGG  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTGGAAAGTCTCTCA-CCTGCCACCATAAAAGGCAAGGCTGTTACCAGG  191

seq1  TCAGCACCATCCACACCTTCCACTGTGCAGGAGAGGTTGCAGGGTCTGAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCATCCACACCTTCCACTGTGCAGGAGAGGTTGCAGGGTCTGAT  241

seq1  CCTGAGCTTGAATAAAGACTTTTTGATTTGCATGTGAGTTGGACTCTTGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTGAATAAAGACTTTTTGATTTGCATGTGAGTTGGACTCTTGG  291

seq1  TGGTCTCTGGTGGTCTATGGGAACCTTGTCAGAGGGCAATGGCACATAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTGGTGGTCTATGGGAACCTTGTCAGAGGGCAATGGCACATAGC  341

seq1  AATTGTGCTAAATTCATGTTGGACCTCAGGAACGGGGAATACTTTTTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCTAAATTCATGTTGGACCTCAGGAACGGGGAATACTTTTTGTT  391

seq1  TTAAAATTTCCCTATTTTGGGGAATTTCAGGCATGTATTAAAATAAACTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTTCCCTATTTTGGGGAATTTCAGGCATGTATTAAAATAAACTC  441

seq1  CTTCTAACTCACTTCCTCCAACTTCGCAAATTCTCCATTTTCCTCTGAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACTCACTTCCTCCAACTTCGCAAATTCTCCATTTTCCTCTGAAA  491

seq1  AGTTCCACAACAAAATTCATACTCCCCCTTTTGAAAATCCACTAAATCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACAACAAAATTCATACTCCCCCTTTTGAAAATCCACTAAATCAG  541

seq1  AATCGACGCCCACAAAAGTTGGAGACGAGGATTTCTTTATATTTCCACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGACGCCCACAAAAGTTGGAGACGAGGATTTCTTTATATTTCCACAG  591

seq1  GAAATGAAAAATTGTGGATACCATCAAAACAGAAAAAGATTAGAATTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAAAATTGTGGATACCATCAAAACAGAAAAAGATTAGAATTGGA  641

seq1  CTGAAAAACTTGGCCACTGAGCCAAAAAGCACTTATTTCATGAAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAACTTGGCCACTGAGCCAAAAAGCACTTATTTCATGAAAAAAAA  691

seq1  AAAAGTCTCTGTTTATAATTTCGAATTACACACAACACAATGATTTAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTCTGTTTATAATTTCGAATTACACACAACACAATGATTTAAAA  741

seq1  CAGAAGAGGGGAAATGTAGCGACATTTTTGGAATTTTGGCTTTTTTATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGGGGAAATGTAGCGACATTTTTGGAATTTTGGCTTTTTTATAA  791

seq1  AACAAAGAAATCTAATAAGAATATGTTTACATTTTAATCCCAGGTATGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAATCTAATAAGAATATGTTTACATTTTAATCCCAGGTATGGG  841

seq1  ATATGGCACTGTTTCAGATTGTCCACAGCAGCTGATTATGTTTTGCCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCACTGTTTCAGATTGTCCACAGCAGCTGATTATGTTTTGCCTAA  891

seq1  TGCTCTAGCAGGGGTGTGGTAGATACTACCATTGTGTGATGCCTGGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAGCAGGGGTGTGGTAGATACTACCATTGTGTGATGCCTGGAATT  941

seq1  CTGAGGACTTTTCAGGGGGTATATAAATGCTAGGACTCCAGGAGGTGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGACTTTTCAGGGGGTATATAAATGCTAGGACTCCAGGAGGTGGGG  991

seq1  TGGGTTGTTGATGTGATCTTGGTCACAGTTTGTTAAATAGTG  1041
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTTGATGTGATCTTGGTCACAGTTTGTTAAATAGTG  1033

seq1: chr7_110819303_110820406
seq2: B6Ng01-172F18.g_66_1172

seq1  GAATTCCCAGCACCGTGTGCACAGTAGACAGCCCCATGCATAGGTCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCACCGTGTGCACAGTAGACAGCCCCATGCATAGGTCTGTG  50

seq1  AGGGCTAACATGGCCAGGAAATAGAACATGGGCTGGTGCAGACTTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAACATGGCCAGGAAATAGAACATGGGCTGGTGCAGACTTGACTC  100

seq1  TGTTCGGATTACATGAAGTATCATGCAGTTTCCCAGGAACACCATTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGGATTACATGAAGTATCATGCAGTTTCCCAGGAACACCATTGCAT  150

seq1  AGATGGTTGAGAAAGGAATGGCAAAGAAGTAGTAGACTTCCAGGCCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGAGAAAGGAATGGCAAAGAAGTAGTAGACTTCCAGGCCAGGA  200

seq1  AATCCAGTAAGAACAAATCTAGAGGTACTTAAGTTTGACATTAAGAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGTAAGAACAAATCTAGAGGTACTTAAGTTTGACATTAAGAAAAC  250

seq1  TGACTTGATAGAAAGTACAAAATATTTCTGGAGGGCTATTCTGCAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGATAGAAAGTACAAAATATTTCTGGAGGGCTATTCTGCAGTACA  300

seq1  CATGCTATATTCTACTTTCTAATAATAACTATCTGTTTGAAAAAATATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATATTCTACTTTCTAATAATAACTATCTGTTTGAAAAAATATCA  350

seq1  GTTTCCATAAACAGTGAAACTGAGACATGTTCCTTGGTTGTACATCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATAAACAGTGAAACTGAGACATGTTCCTTGGTTGTACATCATTG  400

seq1  CAGAAACCTATGCGGACACAAACGTATTCAGACCTAGTGTTATAAGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCTATGCGGACACAAACGTATTCAGACCTAGTGTTATAAGAAAC  450

seq1  AGGAAAGCAGGGAGTTTTATGTCAAAACAATAATGTCTATGGGCTCAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCAGGGAGTTTTATGTCAAAACAATAATGTCTATGGGCTCAGGG  500

seq1  GATGTAGATTGTCTACTGCACTTCTAAGAGTCAGTCCTAGAGGACATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGATTGTCTACTGCACTTCTAAGAGTCAGTCCTAGAGGACATGAA  550

seq1  TGCTTGGTCACAGTGATGTCATGGTTGGCACACTCCTCAGAAGAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGTCACAGTGATGTCATGGTTGGCACACTCCTCAGAAGAATGTGA  600

seq1  AACCCATGGGCAATTTTTGTCATTTGTATTACAGAGGGACTTTTACTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGGGCAATTTTTGTCATTTGTATTACAGAGGGACTTTTACTGCC  650

seq1  TTCAAGTCTTAAATGATCCCTTTGGAAATAGACATCTGTTTTAGAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTCTTAAATGATCCCTTTGGAAATAGACATCTGTTTTAGAATATA  700

seq1  AACTACTATTGAAAAAAGAATCAAAGCAACTTTAGTTGAATCTGTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTATTGAAAAAAGAATCAAAGCAACTTTAGTTGAATCTGTACTTT  750

seq1  TTGGTGAGCACTGTGGTGCTTAGCTTTTATCTAAATTATTCATTTATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGCACTGTGGTGCTTAGCTTTTATCTAAATTATTCATTTATATA  800

seq1  AATTATACTTTGTAGTTTTCTCAATCTATATGGTATATCTTTTATCAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATACTTTGTAGTTTTCTCAATCTATATGGTATATCTTTTATCAAAT  850

seq1  CACTTTATTGTTATTTTTATGCCCTCACTTGTAGCATAAAAAAAATCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTATTGTTATTTTTATGCCCTCACTTGTAGCATAAAAAAAATCCAC  900

seq1  -AAGGATTTTAAATTGGGTGGTTCAG-AAAATGTATCGTA-TTTTTTCTC  947
       ||||||||||||||||||||||||| ||||||||||||| |||||||||
seq2  AAAGGATTTTAAATTGGGTGGTTCAGAAAAATGTATCGTATTTTTTTCTC  950

seq1  ATTGGTGTGATG-TCCATTTTGAATAAA-TTAGGCATTTGAGAATGTGGC  995
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  ATTGGTGTGATGTTCCATTTTGAATAAATTTAGGCATTTGAGAATGTGGC  1000

seq1  -ACA-TGTTGGATGGTGCAACAATACAAAGAAAGCAAATCTGGGCATTGC  1043
       ||| |||||||  ||||||||||||||||||||| ||||||||||||||
seq2  AACATTGTTGGAATGTGCAACAATACAAAGAAAGC-AATCTGGGCATTGC  1049

seq1  ATCTTATACGTCTAAGCCCATTACTGTATCTCTGAGAACATCCTACTTCG  1093
      |||||||||||   |||||| |||||||| |||  | |||| ||||||||
seq2  ATCTTATACGTTCTAGCCCA-TACTGTAT-TCTCTGGACAT-CTACTTCG  1096

seq1  TACATAGTTAA  1104
      |||||||||||
seq2  TACATAGTTAA  1107