BAC Information

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BAC

Clone NameB6Ng01-172M20
Chromosome7 (Build37)
Map Location 116,965,611 - 117,125,064
singlet/doubletdoublet
Overlap geneScube2, Phxr5, Rab6ip1, Tmem41b
Upstream geneOlfr514, Olfr515-ps1, Olfr516, Olfr517, Olfr518, Olfr519, Nlrp10, Eif3s5, BC049265, Tub, Ric3, Lmo1, Stk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3
Downstream geneIpo7, AA474408, Zfp143, Wee1, Swap70, EG668368, Sbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172M20.bB6Ng01-172M20.g
ACCGA001321GA001322
length8311,150
definitionB6Ng01-172M20.b B6Ng01-172M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,124,239 - 117,125,064)(116,965,611 - 116,966,770)
sequence
gaattccaagccagccaagtctacatgatggatctgtctcaaacgagggg
aagagaaggaagggcagccttcctgcatctgacctaggatgtgtttctgc
tgtaaaaaagtgatgtcaaaaagtttctaattctcattataaatgattat
tgactttaatttagaaaaattacccaaaataatgttaaatatgtttttaa
tatgttaatatggttaatttcttaatgcttaatttacaatttaaggcaat
attaaaagattatttaatttttgatttgtattattttgaactttaatttt
gtttgcttagactgttgagactaaaaaatgaatttgtccttattacaaat
taattgcattgcatcgttttgactttgatttttatcatgggactcttgtt
tttaaaattttttacatcattatttttctttagggaagagagggtgaata
tgaaggttccgagagatatggatgacgccaaggctctaggaaaagttctc
tccaaatataaggataccttttatgtacaagtattggttgcttattttgc
tacatatattttgtatccttttatctgaaaaatgtttttctagtttattg
aagaaaagcttccagaggtctactgtttagttagaagtgatggctgtttt
tttccaaatgttaatgcggggcagtgagatggtttcaagtgatggcgcct
gtggcaagctaagcatggtggcctgggtttgatgcctagaatcacatggt
tagaaggagagaaccttgcccctaaaagtgtcctctgattttccaccatg
tcattcatgccctttcacataccacacccaa
gaattcaaggctggcctgatctacagagtaagctccaggaaagctaccca
gagaaaacctgtctcaaaaaagaaaaacaaacaatagagagaatggcttc
aggtgctcaagaaggctgaggcaggaagatcagttaaatcaaggagccag
gacgacacaataagacactaagagaacaaaacaggaaagaaaagaaaaaa
agaggggggaaaaatcaagagccacatgtgagccctcatcttcaccatct
gaggccatggcctcctcgaaactatgaccaaaaaatggccatcatgtgat
atggcccttttacaactgacacacagaatcacaagccaaaatagacctct
ttctttgtaaaggtacccaacctccagggtttcactatagtaacaagaac
actaataaacagaagctgaaaatattgtctaaaatgaaccacggactatc
ctaggcttatctccattgtatgccaaatagagttcactgatattcaaaaa
tatcagtaggcctgaacaaccttcagttgttctctcctcccaccctgagc
atcccaggcatcaaactcagtggccagccttggctacgagcgcctttacc
tgctgagccttctcatggcctctcaagtcctttctaatcagtagaccaga
cccttctttatatctaatcccccctcactaacaattcctatgctgtgttc
atcccccaggaaagtcttccacatcattgcctgacctggtcccatgttgg
gtaccagactcatctagagtttgtgaaagctcttgggaaacatactgcct
ctttaagaaacaaacccaaccaaatttagctgattggcatatcagcgaca
cattcgtatacctagctctattgggtgttcccccatagtctgtggccacg
cagcctaagtcatttagtaaggcctgctcctcttcttggggcttttgcta
tcaggatctctcaggttcacagaccttgacactaggttttcctgaattct
tggactgtccacaaagttcctttataatccacgagctctactcccacagg
ccctgaagagagggcctgtactcagctccctgagaccagaagagggcctc
ttgcctgccttgcttgtcagagtcatccactccacctgaagcaggtcagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_117124239_117125064
seq2: B6Ng01-172M20.b_45_875 (reverse)

seq1  TTGGGTGT-GTATGTGTAAGGGCATGAGTGACAT-GTGG-AAATCAGAGG  47
      |||||||| ||||||| |||||||||| |||||| |||| ||||||||||
seq2  TTGGGTGTGGTATGTGAAAGGGCATGAATGACATGGTGGAAAATCAGAGG  50

seq1  ACAACTTTTAGGGGC-AGGTTCTCTCCTTCT-ACCATGTGATCCTAGGCA  95
      || |||||||||||| ||||||||||||||| |||||||||| |||||||
seq2  AC-ACTTTTAGGGGCAAGGTTCTCTCCTTCTAACCATGTGATTCTAGGCA  99

seq1  TCAAACCCAGGCCACCATGCTTAGCTTGCCACAGGCGCCATCACCTGAAA  145
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAAACCCAGGCCACCATGCTTAGCTTGCCACAGGCGCCATCACTTGAAA  149

seq1  CCATCTCACTGCCCCGCATTAACATTTGGAAAAAAACAGCCATCACTTCT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCACTGCCCCGCATTAACATTTGGAAAAAAACAGCCATCACTTCT  199

seq1  AACTAAACAGTAGACCTCTGGAAGCTTTTCTTCAATAAACTAG-AAAACA  244
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTAAACAGTAGACCTCTGGAAGCTTTTCTTCAATAAACTAGAAAAACA  249

seq1  TTTTTCAGATAAAAGGATACAAAATATATGTAGCAAAATAAGCAACCAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGATAAAAGGATACAAAATATATGTAGCAAAATAAGCAACCAAT  299

seq1  ACTTGTACATAAAAGGTATCCTTATATTTGGAGAGAACTTTTCCTAGAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTACATAAAAGGTATCCTTATATTTGGAGAGAACTTTTCCTAGAGC  349

seq1  CTTGGCGTCATCCATATCTCTCGGAACCTTCATATTCACCCTCTCTTCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCGTCATCCATATCTCTCGGAACCTTCATATTCACCCTCTCTTCCC  399

seq1  TAAAGAAAAATAATGATGTAAAAAATTTTAAAAACAAGAGTCCCATGATA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAATAATGATGTAAAAAATTTTAAAAACAAGAGTCCCATGATA  449

seq1  AAAATCAAAGTCAAAACGATGCAATGCAATTAATTTGTAATAAGGACAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAGTCAAAACGATGCAATGCAATTAATTTGTAATAAGGACAAA  499

seq1  TTCATTTTTTAGTCTCAACAGTCTAAGCAAACAAAATTAAAGTTCAAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTAGTCTCAACAGTCTAAGCAAACAAAATTAAAGTTCAAAAT  549

seq1  AATACAAATCAAAAATTAAATAATCTTTTAATATTGCCTTAAATTGTAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATCAAAAATTAAATAATCTTTTAATATTGCCTTAAATTGTAAA  599

seq1  TTAAGCATTAAGAAATTAACCATATTAACATATTAAAAACATATTTAACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATTAAGAAATTAACCATATTAACATATTAAAAACATATTTAACA  649

seq1  TTATTTTGGGTAATTTTTCTAAATTAAAGTCAATAATCATTTATAATGAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGGTAATTTTTCTAAATTAAAGTCAATAATCATTTATAATGAG  699

seq1  AATTAGAAACTTTTTGACATCACTTTTTTACAGCAGAAACACATCCTAGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAACTTTTTGACATCACTTTTTTACAGCAGAAACACATCCTAGG  749

seq1  TCAGATGCAGGAAGGCTGCCCTTCCTTCTCTTCCCCTCGTTTGAGACAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCAGGAAGGCTGCCCTTCCTTCTCTTCCCCTCGTTTGAGACAGA  799

seq1  TCCATCATGTAGACTTGGCTGGCTTGGAATTC  826
      ||||||||||||||||||||||||||||||||
seq2  TCCATCATGTAGACTTGGCTGGCTTGGAATTC  831

seq1: chr7_116965611_116966770
seq2: B6Ng01-172M20.g_65_1214

seq1  GAATTCAAGGCTGGCCTGATCTACAGAGTAAGCTCCAGGAAAGCTACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCTGGCCTGATCTACAGAGTAAGCTCCAGGAAAGCTACCCA  50

seq1  GAGAAAACCTGTCTCAAAAAAGAAAAACAAACAATAGAGAGAATGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACCTGTCTCAAAAAAGAAAAACAAACAATAGAGAGAATGGCTTC  100

seq1  AGGTGCTCAAGAAGGCTGAGGCAGGAAGATCAGTTAAATCAAGGAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCAAGAAGGCTGAGGCAGGAAGATCAGTTAAATCAAGGAGCCAG  150

seq1  GACGACACAATAAGACACTAAGAGAACAAAACAGGAAAGAAAAGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACACAATAAGACACTAAGAGAACAAAACAGGAAAGAAAAGAAAAAA  200

seq1  AGAGGGGGGAAAAATCAAGAGCCACATGTGAGCCCTCATCTTCACCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGGGAAAAATCAAGAGCCACATGTGAGCCCTCATCTTCACCATCT  250

seq1  GAGGCCATGGCCTCCTCGAAACTATGACCAAAAAATGGCCATCATGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCATGGCCTCCTCGAAACTATGACCAAAAAATGGCCATCATGTGAT  300

seq1  ATGGCCCTTTTACAACTGACACACAGAATCACAAGCCAAAATAGACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCTTTTACAACTGACACACAGAATCACAAGCCAAAATAGACCTCT  350

seq1  TTCTTTGTAAAGGTACCCAACCTCCAGGGTTTCACTATAGTAACAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTAAAGGTACCCAACCTCCAGGGTTTCACTATAGTAACAAGAAC  400

seq1  ACTAATAAACAGAAGCTGAAAATATTGTCTAAAATGAACCACGGACTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAACAGAAGCTGAAAATATTGTCTAAAATGAACCACGGACTATC  450

seq1  CTAGGCTTATCTCCATTGTATGCCAAATAGAGTTCACTGATATTCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTATCTCCATTGTATGCCAAATAGAGTTCACTGATATTCAAAAA  500

seq1  TATCAGTAGGCCTGAACAACCTTCAGTTGTTCTCTCCTCCCACCCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTAGGCCTGAACAACCTTCAGTTGTTCTCTCCTCCCACCCTGAGC  550

seq1  ATCCCAGGCATCAAACTCAGTGGCCAGCCTTGGCTACGAGCGCCTTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGCATCAAACTCAGTGGCCAGCCTTGGCTACGAGCGCCTTTACC  600

seq1  TGCTGAGCCTTCTCATGGCCTCTCAAGTCCTTTCTAATCAGTAGACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCCTTCTCATGGCCTCTCAAGTCCTTTCTAATCAGTAGACCAGA  650

seq1  CCCTTCTTTATATCTAATCCCCCCTCACTAACAATTCCTATGCTGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTATATCTAATCCCCCCTCACTAACAATTCCTATGCTGTGTTC  700

seq1  ATCCCCCAGGAAAGTCTTCCACATCATTGCCTGACCTGGTCCCATGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCAGGAAAGTCTTCCACATCATTGCCTGACCTGGTCCCATGTTGG  750

seq1  GTACCAGACTCATCTAGAGTTTGTGAAAGCTCTTGGGAAACATACTGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGACTCATCTAGAGTTTGTGAAAGCTCTTGGGAAACATACTGCCT  800

seq1  CTTTAAGAAACAAACCCAACCAAATTTAGCTGATTGGCATATCAGCGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGAAACAAACCCAACCAAATTTAGCTGATTGGCATATCAGCGACA  850

seq1  CATTCGTATACCTAGCTCTATTGGGTGTTCCCCCATAGGTCTGTGGCCAC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATTCGTATACCTAGCTCTATTGGGTGTTCCCCCATA-GTCTGTGGCCAC  899

seq1  GCAGCCTAAGTCATTTAGTAAGGCCTGCTCCTCTTCTT-GGGCTTTTGCT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCAGCCTAAGTCATTTAGTAAGGCCTGCTCCTCTTCTTGGGGCTTTTGCT  949

seq1  ATCAGGATCTCTCAGGGTCCACAGACCTTGACACTA-GTTTTCCTGAATT  998
      |||||||||||||| ||| ||||||||||||||||| |||||||||||||
seq2  ATCAGGATCTCTCA-GGTTCACAGACCTTGACACTAGGTTTTCCTGAATT  998

seq1  CTT-GACTGTCCACAAAGTTTCCTTTATAAATCCACGAGCTCTTACTCCC  1047
      ||| |||||||||||||| ||||||||| ||||||||||||| |||||||
seq2  CTTGGACTGTCCACAAAG-TTCCTTTAT-AATCCACGAGCTC-TACTCCC  1045

seq1  ACAGGCCTGGAAAGAGAGGGGCTGTAATTCAGCTCCCTGAGACCAGAAAG  1097
      |||||||  | ||||||||| |||| | |||||||||||||||||| |||
seq2  ACAGGCCCTG-AAGAGAGGGCCTGT-ACTCAGCTCCCTGAGACCAG-AAG  1092

seq1  AGGGCCTCCTGCCTGCC-TGCTTGTCCAAGAGTTCATTCCACTCACCCTA  1146
      |||||||| |||||||| ||||||||  |||| ||| |||||||  ||| 
seq2  AGGGCCTCTTGCCTGCCTTGCTTGTC--AGAG-TCA-TCCACTCCACCT-  1137

seq1  GAAAGCAGGGCAGC  1160
        ||||||| ||||
seq2  -GAAGCAGGTCAGC  1150