BAC Information

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BAC

Clone NameB6Ng01-173B06
Chromosome7 (Build37)
Map Location 145,498,488 - 145,663,394
singlet/doubletdoublet
Overlap geneTcerg1l
Upstream geneEbf3, 9430038I01Rik, Txnl2, LOC435235
Downstream geneLOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173B06.bB6Ng01-173B06.g
ACCGA001525GA001526
length1,126472
definitionB6Ng01-173B06.b B6Ng01-173B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,662,306 - 145,663,394)(145,498,488 - 145,498,965)
sequence
gaattcactgttctaagagcaaaaggaaaggctcctgtgcctacgtatgg
catcagggtgcagttgtccccctatctactccacagtgacaggctgacag
gaccccatccatcctgctctccacactgcctggaattagaacaagccatc
tctttcatagcctgcccgctcctcaccaggagtgtttgatatggatttag
agagtcattagtaagccgggatcaatattaagagtgactcaatattcagg
aattatctgtggctgagctgtcccagacttatagagatcagcaaacacaa
cacaagctgagaagcttcagagagttgacaccgagtgcgaggacaccacc
ccagcctacatacctgcagggggtgtgtgtgaggaagaggacatacctac
atcagagcctcagtaagatggcaaaggctagaactcatgcaaccccgagt
gcaaaggacccaagactggccaggaggcagctccagcccctaggtggtac
agtcgcagatcatcatgtgttttagaaccttggccctgaaaaatcatgac
cccttcctgaaggctcccattgaggccctctccaaaggctttcaggattc
tgaccatccctttaagacacagacagattttctataggaaagcttttcag
ctttgagtcctgtactcagaaaacattacagtaagctctggttatgcaag
cagagcacttacacagttttcacaagaacgttttgaggcacatagtacac
aacaggcatatgtgtgtatgtaaacacacatatacatattttatgatcag
ggctgggcgaagatgctgaggctgctgcatccttcattacataagagatc
acaagctcagtataaacctctaacatcccaactcagaagcagtaggcaag
aagggggctttccctttactctgggatgtttaccctttttagttctaccg
cagaccctcaatgaaattagaatgagactccaccccttactatatggaga
ggatatcttaaactttagtattatgaactggaaatgaaattaaatttaat
ttctggatatcattttaccaagaaaacctctttggagaacaacattcaga
aggaacagttgaactattgtcttcac
attgctttctccagaataaatgcactgcctgctctctaggctcttttacc
acatggtagctcacttagttgtcagagggaccaccagaaaagagtggcac
ttgtgcatagtccaattttacttagcaagagccctcctatacccccagcc
caattcatgatgctggctgtttgggtgtgacaaagagaaatagttaagtg
tttcctttaagaaaagggaagaatattctctatttttaaaaaaattgcca
aactgaggctgctgggattggtgataggaacacggtttcgttctcgaaaa
tagaattcattctggtttttactgttgcacctcaagctgcaagttagagt
cgcagtgcactgagcttcgttaagaggggaaagacctttcttcccttcta
ccaccagcgttctgctctcttctttcctatcacatgggatgagggtgagg
gtagaggagaagagagtgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_145662306_145663394
seq2: B6Ng01-173B06.b_41_1166 (reverse)

seq1  GTGAAGAC-ATAG-TCAACTGTTCC-TCTGAATGT--GTCTCCAAAGAG-  44
      |||||||| |||| ||||||||||| |||||||||   ||||||||||| 
seq2  GTGAAGACAATAGTTCAACTGTTCCTTCTGAATGTTGTTCTCCAAAGAGG  50

seq1  -TTTCTGGGT-AAATGATAT-CAG-AATTAA--TTAA-TTCATT--CAG-  84
       ||||| ||| ||||||||| ||| ||||||  |||| ||||||  ||| 
seq2  TTTTCTTGGTAAAATGATATCCAGAAATTAAATTTAATTTCATTTCCAGT  100

seq1  TCAT-ATACTAA--GTTAAGATATCCTC----CATAGTAAGGG--TGAGT  125
      |||| |||||||   |||||||||||||     ||||||||||   ||||
seq2  TCATAATACTAAAGTTTAAGATATCCTCTCCATATAGTAAGGGGTGGAGT  150

seq1  CTCA-TCTAA-TTCATTGAGGGTCTGC-GTAGAACTAAAA--GGTTAACA  170
      |||| ||||| |||||||||||||||| ||||||||||||  ||| ||||
seq2  CTCATTCTAATTTCATTGAGGGTCTGCGGTAGAACTAAAAAGGGTAAACA  200

seq1  T-CCAGAGT-AAGGGAAAGCCCC--TCCTGCCTACTGCTTCTGAGTTGGG  216
      | ||||||| |||||||||||||  || ||||||||||||||||||||||
seq2  TCCCAGAGTAAAGGGAAAGCCCCCTTCTTGCCTACTGCTTCTGAGTTGGG  250

seq1  ATG-TAGA-GTTTATACTGAGCTTGTGATCTC-TATGTAATGAAGGATGC  263
      ||| |||| ||||||||||||||||||||||| |||||||||||||||||
seq2  ATGTTAGAGGTTTATACTGAGCTTGTGATCTCTTATGTAATGAAGGATGC  300

seq1  AGCAGCCTCAGCATCTTCGCCCAGCCCTGATCATAAAATATGTATATGTG  313
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTCAGCATCTTCGCCCAGCCCTGATCATAAAATATGTATATGTG  350

seq1  TGTTTACATACACACATATGCCTGTTGTGTACTATGTGCCTCAAAACGTT  363
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATACACACATATGCCTGTTGTGTACTATGTGCCTCAAAACGTT  400

seq1  CTTGTGAAAACTGTGTAAGTGCTCTGCTTGCATAACCAGAGCTTACTGTA  413
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAAAACTGTGTAAGTGCTCTGCTTGCATAACCAGAGCTTACTGTA  450

seq1  ATGTTTTCTGAGTACAGGACTCAAAGCTGAAAAGCTTTCCTATAGAAAAT  463
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTGAGTACAGGACTCAAAGCTGAAAAGCTTTCCTATAGAAAAT  500

seq1  CTGTCTGTGTCTTAAAGGGATGGTCAGAATCCTGAAAGCCTTTGGAGAGG  513
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTGTCTTAAAGGGATGGTCAGAATCCTGAAAGCCTTTGGAGAGG  550

seq1  GCCTCAATGGGAGCCTTCAGGAAGGGGTCATGATTTTTCAGGGCCAAGGT  563
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAATGGGAGCCTTCAGGAAGGGGTCATGATTTTTCAGGGCCAAGGT  600

seq1  TCTAAAACACATGATGATCTGCGACTGTACCACCTAGGGGCTGGAGCTGC  613
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACACATGATGATCTGCGACTGTACCACCTAGGGGCTGGAGCTGC  650

seq1  CTCCTGGCCAGTCTTGGGTCCTTTGCACTCGGGGTTGCATGAGTTCTAGC  663
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCAGTCTTGGGTCCTTTGCACTCGGGGTTGCATGAGTTCTAGC  700

seq1  CTTTGCCATCTTACTGAGGCTCTGATGTAGGTATGTCCTCTTCCTCACAC  713
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCATCTTACTGAGGCTCTGATGTAGGTATGTCCTCTTCCTCACAC  750

seq1  ACACCCCCTGCAGGTATGTAGGCTGGGGTGGTGTCCTCGCACTCGGTGTC  763
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCCTGCAGGTATGTAGGCTGGGGTGGTGTCCTCGCACTCGGTGTC  800

seq1  AACTCTCTGAAGCTTCTCAGCTTGTGTTGTGTTTGCTGATCTCTATAAGT  813
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTGAAGCTTCTCAGCTTGTGTTGTGTTTGCTGATCTCTATAAGT  850

seq1  CTGGGACAGCTCAGCCACAGATAATTCCTGAATATTGAGTCACTCTTAAT  863
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACAGCTCAGCCACAGATAATTCCTGAATATTGAGTCACTCTTAAT  900

seq1  ATTGATCCCGGCTTACTAATGACTCTCTAAATCCATATCAAACACTCCTG  913
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCCGGCTTACTAATGACTCTCTAAATCCATATCAAACACTCCTG  950

seq1  GTGAGGAGCGGGCAGGCTATGAAAGAGATGGCTTGTTCTAATTCCAGGCA  963
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGCGGGCAGGCTATGAAAGAGATGGCTTGTTCTAATTCCAGGCA  1000

seq1  GTGTGGAGAGCAGGATGGATGGGGTCCTGTCAGCCTGTCACTGTGGAGTA  1013
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGAGCAGGATGGATGGGGTCCTGTCAGCCTGTCACTGTGGAGTA  1050

seq1  GATAGGGGGACAACTGCACCCTGATGCCATACGTAGGCACAGGAGCCTTT  1063
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGGACAACTGCACCCTGATGCCATACGTAGGCACAGGAGCCTTT  1100

seq1  CCTTTTGCTCTTAGAACAGTGAATTC  1089
      ||||||||||||||||||||||||||
seq2  CCTTTTGCTCTTAGAACAGTGAATTC  1126

seq1: chr7_145498488_145498965
seq2: B6Ng01-173B06.g_70_547

seq1  GAATTCATTGCTTTCTCCAGAATAAATGCACTGCCTGCTCTCTAGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCTTTCTCCAGAATAAATGCACTGCCTGCTCTCTAGGCTCT  50

seq1  TTTACCACATGGTAGCTCACTTAGTTGTCAGAGGGACCACCAGAAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACATGGTAGCTCACTTAGTTGTCAGAGGGACCACCAGAAAAGAG  100

seq1  TGGCACTTGTGCATAGTCCAATTTTACTTAGCAAGAGCCCTCCTATACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTGTGCATAGTCCAATTTTACTTAGCAAGAGCCCTCCTATACCC  150

seq1  CCAGCCCAATTCATGATGCTGGCTGTTTGGGTGTGACAAAGAGAAATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAATTCATGATGCTGGCTGTTTGGGTGTGACAAAGAGAAATAGT  200

seq1  TAAGTGTTTCCTTTAAGAAAAGGGAAGAATATTCTCTATTTTTAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTCCTTTAAGAAAAGGGAAGAATATTCTCTATTTTTAAAAAAA  250

seq1  TTGCCAAACTGAGGCTGCTGGGATTGGTGATAGGAACACGGTTTCGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAACTGAGGCTGCTGGGATTGGTGATAGGAACACGGTTTCGTTCT  300

seq1  CGAAAATAGAATTCATTCTGGTTTTTACTGTTGCACCTCAAGCTGCAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAATAGAATTCATTCTGGTTTTTACTGTTGCACCTCAAGCTGCAAGT  350

seq1  TAGAGTCGCAGTGCACTGAGCTTCGTTAAGAGGGGAAAGACCTTTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCGCAGTGCACTGAGCTTCGTTAAGAGGGGAAAGACCTTTCTTCC  400

seq1  CTTCTACCACCAGCGTTCTGCTCTCTTCTTTCCTATCACATGGGATGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACCACCAGCGTTCTGCTCTCTTCTTTCCTATCACATGGGATGAGG  450

seq1  GTGAGGGTAGAGGAGAAGAGAGTGTGGG  478
      ||||||||||||||||||||||||||||
seq2  GTGAGGGTAGAGGAGAAGAGAGTGTGGG  478