BAC Information

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BAC

Clone NameB6Ng01-173C23
Chromosome7 (Build37)
Map Location 11,822,426 - 11,823,442
singlet/doubletsinglet
Overlap geneLOC672893
Upstream geneLOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750
Downstream geneLOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173C23.bB6Ng01-173C23.g
ACCGA001601GA001602
length1,1111,022
definitionB6Ng01-173C23.b B6Ng01-173C23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtacagatggagttactggattttggctggtcagtgggttcac
tttcagttctcttctactgataaattactactaaacaggcagggaggagg
tctgcatgtacaccagtcagagtggctaggattaaaaccacagatcaaaa
catactggagaggatgtggagaaaggggaatgcccctccattcctggtgg
gattgtgaacttgtacaacctctgtccctgtgtgataaggagtcttgccg
gcgaggacacacacacaggacacactcggatacttctgcagcaaagcttt
aatgcatctcgagagaaagatgatcagcttctggggaggagacccagaac
acaggaaactcggtccttaaatagaccacgaagagcggttggagacgtgt
tttgccctgactggttgctcaccatcagcccagatgacgccaccggacag
gcagggcacaaggaatggaaaaataccccagcacatgctcagactacttg
tttaccagttagaaaaccagatgtcagcgccatcttgtaatggcgattgc
aagggcggctcctcacaaacctcctgtaaatcaatctggcaattcctcag
aaaattagaaataattctacctgaagactcagactgctcctggacatata
cccaaaagatgctctaccatataacagggacatatgctccactacgttct
tagcagccttattcataatagccagaaaccagaagcaacccagatgtccc
tcaacagaaaaaaaaaataagtacagaaaatgtggtttctttacagaatg
gaataacagtaagctattaaaaacaatggcatcatgaattttgcagtcaa
atgggtggaaatagaaaatatcatcctgagtgaagttacccagactggaa
aggacatgcatggtatgtacttaccaatctgtgtattattagccaaaggt
agattataccccagggatattattaccacagaccctatgaagtttaacat
agggaagcccagtgaggagtttcaatcccacttaagaagagaagaaaagt
atcgtgttgagcagaggggaggggtgtacttcattgcagaagaaaagaag
ttatggctaat
gaattcatctcacatggaaggcccagatacaaactgggccttgggggtaa
aaagcaccttttccaaatacacacttttaaaatgcacttgcaaattgaaa
gaattgggtgggtgggttgatgaactcagtagataagaacaattcctttg
tgatcaggaaacctgactttaaatgaaaagaacttgtaaatacctggcca
tgactctggattactttaacccctgccttgagtgatggagacaggcagat
cctaaaagctggccagacactggcagaaatgactgggttaggtccaatga
gagactttgccttaaaggaatatagttaataaagacactgaatgtcatcc
tctgtctttgttagtatgtgtctgtaggcatgtacacacacacacacaca
cagacacacacacacacacacacacacacacacacacacacacacaccac
aaatagagctttgctttcctagtctttatcagtgtttgcctttgccagta
agattccatgtaaaattagcaaccatcccaggaaggaatttccccatgtc
gatgagctacatttccttggttcctcttgagacacacaccatcattatgt
acatcttaaatcttcctcagacgaaaggatagaccatctagagactgcca
tacccacggatctaccccataatcagcctccaaatgctgacaccattgca
tacaccagcaagattttgctgaaaggaccctgatataactgtctcttgtg
aggctatgccggggcctggtaaacacagaagtggaggctcacagtcagct
attggatggatcacagggcccccaatggaggagctagagaaagtacccaa
ggagctaaaggggcctgcaaccctataggtgggaacaacaatatgaacta
accagtacctccagagctcatgtctctagctgcctagacgatgtattaga
agttggccttagtggcccatttattggggaaggagaggctcccttggtct
gcaactttattatgccctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11822426_11823442
seq2: B6Ng01-173C23.g_67_1088

seq1  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCACATGGAAGGCCCAGATACAAACTGGGCCTTGGGGGTAA  50

seq1  AAAGCACCTTTTCCAAATACACACTTTTAAAATGCACTTGCAAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCTTTTCCAAATACACACTTTTAAAATGCACTTGCAAATTGAAA  100

seq1  GAATTGGGTGGGTGGGTTGATGAACTCAGTAGATAAGAACAATTCCTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGTGGGTGGGTTGATGAACTCAGTAGATAAGAACAATTCCTTTG  150

seq1  TGATCAGGAAACCTGACTTTAAATGAAAAGAACTTGTAAATACCTGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGGAAACCTGACTTTAAATGAAAAGAACTTGTAAATACCTGGCCA  200

seq1  TGACTCTGGATTACTTTAACCCCTGCCTTGAGTGATGGAGACAGGCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGGATTACTTTAACCCCTGCCTTGAGTGATGGAGACAGGCAGAT  250

seq1  CCTAAAAGCTGGCCAGACACTGGCAGAAATGACTGGGTTAGGTCCAATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAAGCTGGCCAGACACTGGCAGAAATGACTGGGTTAGGTCCAATGA  300

seq1  GAGACTTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTGCCTTAAAGGAATATAGTTAATAAAGACACTGAATGTCATCC  350

seq1  TCTGTCTTTGTTAGTATGTGTCTGTAGGCATGTACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTGTTAGTATGTGTCTGTAGGCATGTACACACACACACACACA  400

seq1  CAGACACACACACACACACACACACACACACACACACACACACACACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACACACACACACACACACACACACACACACACACACACACCAC  450

seq1  AAATAGAGCTTTGCTTTCCTAGTCTTTATCAGTGTTTGCCTTTGCCAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCTTTGCTTTCCTAGTCTTTATCAGTGTTTGCCTTTGCCAGTA  500

seq1  AGATTCCATGTAAAATTAGCAACCATCCCAGGAAGGAATTTCCCCATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCATGTAAAATTAGCAACCATCCCAGGAAGGAATTTCCCCATGTC  550

seq1  GATGAGCTACATTTCCTTGGTTCCTCTTGAGACACACACCATCATTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTACATTTCCTTGGTTCCTCTTGAGACACACACCATCATTATGT  600

seq1  ACATCTTAAATCTTCCTCAGACGAAAGGATAGACCATCTAGAGACTGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAAATCTTCCTCAGACGAAAGGATAGACCATCTAGAGACTGCCA  650

seq1  TACCCACGGATCTACCCCATAATCAGCCTCCAAATGCTGACACCATTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACGGATCTACCCCATAATCAGCCTCCAAATGCTGACACCATTGCA  700

seq1  TACACCAGCAAGATTTTGCTGAAAGGACCCTGATATAACTGTCTCTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAGCAAGATTTTGCTGAAAGGACCCTGATATAACTGTCTCTTGTG  750

seq1  AGGCTATGCCGGGGCCTGGTAAACACAGAAGTGGAGGCTCACAGTCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGCCGGGGCCTGGTAAACACAGAAGTGGAGGCTCACAGTCAGCT  800

seq1  ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAA  850

seq1  GGAGCTAAAGGGGCCTGCAACCCTATAGGT-GGAACAACAATATGAACTA  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGCTAAAGGGGCCTGCAACCCTATAGGTGGGAACAACAATATGAACTA  900

seq1  ACCAGTACCTCCAGAGCTCATGTCTCTAGCTGCCTAGACGATGTATTAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCTCCAGAGCTCATGTCTCTAGCTGCCTAGACGATGTATTAGA  950

seq1  AGTTGGCCTTAGTTGGCCA-TTATTGGG--AAGAGAGGC-CCCTTGGTCT  995
      ||||||||||||| | ||| ||||||||  | ||||||| ||||||||| 
seq2  AGTTGGCCTTAGTGGCCCATTTATTGGGGAAGGAGAGGCTCCCTTGGTC-  999

seq1  TGCAAACTTTA-TATG-CCTCAGT  1017
      ||| ||||||| |||| |||||||
seq2  TGC-AACTTTATTATGCCCTCAGT  1022