BAC Information

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BAC

Clone NameB6Ng01-176A09
Chromosome7 (Build37)
Map Location 4,398,785 - 4,399,987
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13
Downstream geneEps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176A09.bB6Ng01-176A09.g
ACCGA003672GA003673
length1,1811,210
definitionB6Ng01-176A09.b B6Ng01-176A09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
cggttcaggaatttttcccctgtgcccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccagatattttatattatt
tgtgactatgagaaggtgtgtttccctaattcctttctcagccggtttat
ctttgtatagagaacgcattggcttgtttgagttaattttatatcagcta
ctcaccgaagctgtttatcagtttacggagtctcttgtagaatttagggt
cacttactatccatcaaccatctgcgaaagtgaattgacactcctttcca
attgatccctgattccttgtgtgccaatgtg
gaattcaatccttaccacacagtttccctgacagtaacagtaaaggctga
ttctcctgggactggaaaggtaggtcagtggcacttgctgctgctgcaga
ggaccccagcacccaacaaccatgtctaactccagtttcagggattcaga
cgccctcttctggccttcccaggcactgcacaaaaatggctcagagacaa
ctcaagcaggtacaacattcacacataagataaataaataacttttcatt
taaaaagagtgtttttcaaatgtctgagagccttcatctaccacaaatgt
gaggaggtgtcctagttagggttactattgctatgataaaacaccatgac
caaaagcgagttggggaggaagaggataattagaaaggattacaggctgt
gatccagctagtccaacaatggctgtctaccaatgaccaaagaattcagt
agttgttcagtccaagaggctggtcttcagtgtgtaccagaatcctgaag
aatgacactccaatgacagtgaaacaatggacttggaaagaccgtggttg
gaaaattggcacctggagttgggtgttgctgtgacagacctgaccatgtg
tttcagggaggattgtgaaagaaccttggaactctgggcctttgagtgtt
gagagcttagtgggctgctctgtggaagcttagaagataagaatgttgag
agcacaccagccagcagcactccttcacggcctctgcatcagctcctccc
tcccggttcctgccccgtttgagttcctgtcttgacttcctatgatgatg
aacatgatatggacatgtaagtcaataaatcctttcttcttcaacttgct
ttgatcatggtgtttcatctgactaaaatggtaagaagaagacagcagaa
aaaccacagtgggtgctacattttttgttttgtttgtttgtttggaaaca
gggcctcttgtagtctagctggtctctaactcactatgtagttgaggaca
ccttgagtgcattcagctaaatcatctactcctagaacagactcctactg
agaatgcttctagttccttctccacttgccctgggattgcagcccactcc
tctcccagagcagggaggcagaccaccgacgatggccacaaacacactgg
catctatggttgcaataagcctttagtgtggaaaccagctcagagagaga
caggtttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_4398785_4399987
seq2: B6Ng01-176A09.g_67_1276

seq1  GAATTCAATCCTTACCACACAGTTTCCCTGACAGTAACAGTAAAGGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTTACCACACAGTTTCCCTGACAGTAACAGTAAAGGCTGA  50

seq1  TTCTCCTGGGACTGGAAAGGTAGGTCAGTGGCACTTGCTGCTGCTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGGGACTGGAAAGGTAGGTCAGTGGCACTTGCTGCTGCTGCAGA  100

seq1  GGACCCCAGCACCCAACAACCATGTCTAACTCCAGTTTCAGGGATTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCAGCACCCAACAACCATGTCTAACTCCAGTTTCAGGGATTCAGA  150

seq1  CGCCCTCTTCTGGCCTTCCCAGGCACTGCACAAAAATGGCTCAGAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCTTCTGGCCTTCCCAGGCACTGCACAAAAATGGCTCAGAGACAA  200

seq1  CTCAAGCAGGTACAACATTCACACATAAGATAAATAAATAACTTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCAGGTACAACATTCACACATAAGATAAATAAATAACTTTTCATT  250

seq1  TAAAAAGAGTGTTTTTCAAATGTCTGAGAGCCTTCATCTACCACAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGAGTGTTTTTCAAATGTCTGAGAGCCTTCATCTACCACAAATGT  300

seq1  GAGGAGGTGTCCTAGTTAGGGTTACTATTGCTATGATAAAACACCATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTGTCCTAGTTAGGGTTACTATTGCTATGATAAAACACCATGAC  350

seq1  CAAAAGCGAGTTGGGGAGGAAGAGGATAATTAGAAAGGATTACAGGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCGAGTTGGGGAGGAAGAGGATAATTAGAAAGGATTACAGGCTGT  400

seq1  GATCCAGCTAGTCCAACAATGGCTGTCTACCAATGACCAAAGAATTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCTAGTCCAACAATGGCTGTCTACCAATGACCAAAGAATTCAGT  450

seq1  AGTTGTTCAGTCCAAGAGGCTGGTCTTCAGTGTGTACCAGAATCCTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTCAGTCCAAGAGGCTGGTCTTCAGTGTGTACCAGAATCCTGAAG  500

seq1  AATGACACTCCAATGACAGTGAAACAATGGACTTGGAAAGACCGTGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACTCCAATGACAGTGAAACAATGGACTTGGAAAGACCGTGGTTG  550

seq1  GAAAATTGGCACCTGGAGTTGGGTGTTGCTGTGACAGACCTGACCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGCACCTGGAGTTGGGTGTTGCTGTGACAGACCTGACCATGTG  600

seq1  TTTCAGGGAGGATTGTGAAAGAACCTTGGAACTCTGGGCCTTTGAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAGGATTGTGAAAGAACCTTGGAACTCTGGGCCTTTGAGTGTT  650

seq1  GAGAGCTTAGTGGGCTGCTCTGTGGAAGCTTAGAAGATAAGAATGTTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTAGTGGGCTGCTCTGTGGAAGCTTAGAAGATAAGAATGTTGAG  700

seq1  AGCACACCAGCCAGCAGCACTCCTTCACGGCCTCTGCATCAGCTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACCAGCCAGCAGCACTCCTTCACGGCCTCTGCATCAGCTCCTCCC  750

seq1  TCCCGGTTCCTGCCCCGTTTGAGTTCCTGTCTTGACTTCCTATGATGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGTTCCTGCCCCGTTTGAGTTCCTGTCTTGACTTCCTATGATGATG  800

seq1  AACATGATATGGACATGTAAGTCAATAAATCCTTTCTTCTTCAACTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATATGGACATGTAAGTCAATAAATCCTTTCTTCTTCAACTTGCT  850

seq1  TTGATCATGGTGTTTCATCTGACTAAAATGGTAAGAAGAAGACAAGCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGATCATGGTGTTTCATCTGACTAAAATGGTAAGAAGAAGAC-AGCAGA  899

seq1  AAAACCACAGTGGGTGCTACATTTTTTGTTTTGTTTGTTTGTTTGGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACAGTGGGTGCTACATTTTTTGTTTTGTTTGTTTGTTTGGAAAC  949

seq1  AGGGCCTCTTGTAGTCTAGGCTGGTCTCTAACTCACTATGTAGTTGAGGA  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGGCCTCTTGTAGTCTA-GCTGGTCTCTAACTCACTATGTAGTTGAGGA  998

seq1  CAACCTTGAGTGCATTCAGCCTAAAATCATCTACTCCTAGAACAGACTCC  1050
      | ||||||||||||||||||   |||||||||||||||||||||||||||
seq2  C-ACCTTGAGTGCATTCAGC--TAAATCATCTACTCCTAGAACAGACTCC  1045

seq1  TACTGAGAATGCTCTTAGT--CCTCTCAAC-TGCCCTGGGATTGCAG-CC  1096
      |||||||||||||  ||||  | |||| || |||||||||||||||| ||
seq2  TACTGAGAATGCTTCTAGTTCCTTCTCCACTTGCCCTGGGATTGCAGCCC  1095

seq1  ACTCCTC-CACAGAAGCA-GGAAGCAGA-CACAGACGATG--CACAAACA  1141
      ||||||| | ||| |||| ||| ||||| ||| |||||||  ||||||||
seq2  ACTCCTCTCCCAG-AGCAGGGAGGCAGACCACCGACGATGGCCACAAACA  1144

seq1  AACCACT-GCATCTAT-GTTGCAATAAAGCTTTA-TGTGGAAAACAAGC-  1187
         |||| |||||||| ||||||||||  ||||| ||||| |||| ||| 
seq2  ---CACTGGCATCTATGGTTGCAATAAGCCTTTAGTGTGG-AAACCAGCT  1190

seq1  ---AGAGAGACA-GTTTGCC  1203
         ||||||||| |||||||
seq2  CAGAGAGAGACAGGTTTGCC  1210