BAC Information

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BAC

Clone NameB6Ng01-176C09
Chromosome7 (Build37)
Map Location 134,190,384 - 134,327,709
singlet/doubletdoublet
Overlap gene1810010M01Rik, AI467606, Qprt, Spn
Upstream geneGsg1l, Xpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22
Downstream geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176C09.bB6Ng01-176C09.g
ACCGA003761GA003762
length1,188384
definitionB6Ng01-176C09.b B6Ng01-176C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,190,384 - 134,191,558)(134,327,320 - 134,327,709)
sequence
gaattcaagcagaacccagtgaattgtccacatctaagcttattgcccag
cagccccaccagagctgagccactgtcttagtcattgttctgttgctgtg
aagagaccccatgaccaaggcaaccataatgagagaaaatatttcattgg
gggctggcttacagtttcagaggtttagtccattaaaccatggcaggaag
catgacaacatgcaagcagactctaggaactacattctgatctatagaca
gagggaagagggatgaaataggcttttgaaacttcaaaacccaccctcag
tgacacacatcttctacacttgatcttagccaaaaggccgagaagcgatg
acacacatcttctaacaaaaggccatacaaattaatccttctaatccttt
caaatagtgccacaccctcatgactaagtattcacatatatgagcctgtg
gttcctattctcattcaaaccaccacagccaggtgcattaaaaacaaaac
aagactgctgaactgtctctttaactctatatagaaatagttgtacttgt
ccttaaaaacaaaatttcaagcttgtgttagaaaatatcaacatttgcca
aattgccactccaacaaatgaaagatactctgttcgcagagaaatctgca
tgcaatggtccgccatgcctttgtagcacaccttggggccaatcagctcc
aacagtgtggtgcctgcacttctgccaccgcagggtcactctccacacca
gcaccactgccaccttgggcatgtcagcctcaactctgctagccagtagg
tcttttctgaagtgtgcgacatcaaacagtccatttaccgtcttcacagg
cgaccttttcttagttttaaactgtatgatggagaagatgttgaaaagcc
cagcccaaaattaagaataaagtgatgaggatctagacctggttctatgt
agtgccagggagtaaacccagagctgcgtgcccccaaattatgtcactct
ggctgtcttagaattcactatgtagatcagactagcctcaaactcgaaga
agtttgcccaactcttgcctccccagttctggggttaagaatgttacctc
cacccatgtcaaggtttatttattttatttcaatggtggtgtggagtgtt
tttgcctgtttgtcttatatgggaaccctaacatttga
tgggaaagaaactgtgtccgcaaagaccgactaactgattagaactgctg
tggttgcagctgtatagcaccggctgcgcttcctgtggactttggcttga
tttccagcaccatcaggcacagcagtacatagcacattaggtccaggaga
tctgatgcctcctgctggcctcctcaggcacggcacatacgtggtgcatg
ttcatacaagcaggcaaaacacccatacacataaaatttggaggggaaaa
aaagtagcacatatctttagttccagaactcagaaagcagaggcaggcag
gtatctgtgagtttgagtcttgtctgcatagtgagttccaatacatacag
gtacacttgctggtttggggggtggggatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_134190384_134191558
seq2: B6Ng01-176C09.b_41_1228

seq1  GAATTCAAGCAGAACCCAGTGAATTGTCCACATCTAAGCTTATTGCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGAACCCAGTGAATTGTCCACATCTAAGCTTATTGCCCAG  50

seq1  CAGCCCCACCAGAGCTGAGCCACTGTCTTAGTCATTGTTCTGTTGCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCCACCAGAGCTGAGCCACTGTCTTAGTCATTGTTCTGTTGCTGTG  100

seq1  AAGAGACCCCATGACCAAGGCAACCATAATGAGAGAAAATATTTCATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCCCATGACCAAGGCAACCATAATGAGAGAAAATATTTCATTGG  150

seq1  GGGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTAAACCATGGCAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTAAACCATGGCAGGAAG  200

seq1  CATGACAACATGCAAGCAGACTCTAGGAACTACATTCTGATCTATAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACATGCAAGCAGACTCTAGGAACTACATTCTGATCTATAGACA  250

seq1  GAGGGAAGAGGGATGAAATAGGCTTTTGAAACTTCAAAACCCACCCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGAGGGATGAAATAGGCTTTTGAAACTTCAAAACCCACCCTCAG  300

seq1  TGACACACATCTTCTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACATCTTCTACACTTGATCTTAGCCAAAAGGCCGAGAAGCGATG  350

seq1  ACACACATCTTCTAACAAAAGGCCATACAAATTAATCCTTCTAATCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCTTCTAACAAAAGGCCATACAAATTAATCCTTCTAATCCTTT  400

seq1  CAAATAGTGCCACACCCTCATGACTAAGTATTCACATATATGAGCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAGTGCCACACCCTCATGACTAAGTATTCACATATATGAGCCTGTG  450

seq1  GTTCCTATTCTCATTCAAACCACCACAGCCAGGTGCATTAAAAACAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATTCTCATTCAAACCACCACAGCCAGGTGCATTAAAAACAAAAC  500

seq1  AAGACTGCTGAACTGTCTCTTTAACTCTATATAGAAATAGTTGTACTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTGAACTGTCTCTTTAACTCTATATAGAAATAGTTGTACTTGT  550

seq1  CCTTAAAAACAAAATTTCAAGCTTGTGTTAGAAAATATCAACATTTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAACAAAATTTCAAGCTTGTGTTAGAAAATATCAACATTTGCCA  600

seq1  AATTGCCACTCCAACAAATGAAAGATACTCTGTTCGCAGAGAAATCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCACTCCAACAAATGAAAGATACTCTGTTCGCAGAGAAATCTGCA  650

seq1  TGCAATGGTCCGCCATGCCTTTGTAGCACACCTTGGGGCCAATCAGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGGTCCGCCATGCCTTTGTAGCACACCTTGGGGCCAATCAGCTCC  700

seq1  AACAGTGTGGTGCCTGCACTTCTGCCACCGCAGGGTCACTCTCCACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTGGTGCCTGCACTTCTGCCACCGCAGGGTCACTCTCCACACCA  750

seq1  GCACCACTGCCACCTTGGGCATGTCAGCCTCAACTCTGCTAGCCAGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACTGCCACCTTGGGCATGTCAGCCTCAACTCTGCTAGCCAGTAGG  800

seq1  TCTTTTCTGAAGTGTGCGACATCAAACAGTCCATTTACCGTCTTCACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGAAGTGTGCGACATCAAACAGTCCATTTACCGTCTTCACAGG  850

seq1  CGACCTTTTCTTAGTTTTAAACTGTATGATGGAGAAGATGTTGAAAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACCTTTTCTTAGTTTTAAACTGTATGATGGAGAAGATGTTGAAAAGCC  900

seq1  CAGCCCAAAATTAAGAATAAAGTGATGAGGATCTAGACCTGGTTCTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCAAAATTAAGAATAAAGTGATGAGGATCTAGACCTGGTTCTATGT  950

seq1  AGTGCCAGGGAGTAAACCCAGAGCTGCGTGCCCCCAAATTATGTCACTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGGGAGTAAACCCAGAGCTGCGTGCCCCCAAATTATGTCACTCT  1000

seq1  GGCTGTCTTAGAATTCACTATGTAGATCAGACTAGCCTCAAACTCGAAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCTTAGAATTCACTATGTAGATCAGACTAGCCTCAAACTCGAAGA  1050

seq1  GGTTTGCCCAACTC-TGCCTCCCCAGTCCTGGGGTTAAAGATGT--ACTC  1097
       ||||||||||||| |||||||||||| ||||||||||  ||||   |||
seq2  AGTTTGCCCAACTCTTGCCTCCCCAGTTCTGGGGTTAAGAATGTTACCTC  1100

seq1  CA-CCATGTCAAGTGTTATTTATTTTATTT-AATG--TGTGT-GAGTG-T  1141
      || ||||||||||  ||||||||||||||| ||||   |||| ||||| |
seq2  CACCCATGTCAAGGTTTATTTATTTTATTTCAATGGTGGTGTGGAGTGTT  1150

seq1  TTTGCCTGTTTGTC-TATATGG--ACACT-ACATTTGA  1175
      |||||||||||||| |||||||  || || ||||||||
seq2  TTTGCCTGTTTGTCTTATATGGGAACCCTAACATTTGA  1188

seq1: chr7_134327320_134327709
seq2: B6Ng01-176C09.g_63_452 (reverse)

seq1  CCCCCATCCCCACCCCCCAAACCAGCAAGTGTACCTGTATGTATTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATCCCCACCCCCCAAACCAGCAAGTGTACCTGTATGTATTGGAAC  50

seq1  TCACTATGCAGACAAGACTCAAACTCACAGATACCTGCCTGCCTCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGCAGACAAGACTCAAACTCACAGATACCTGCCTGCCTCTGCTT  100

seq1  TCTGAGTTCTGGAACTAAAGATATGTGCTACTTTTTTTCCCCTCCAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCTGGAACTAAAGATATGTGCTACTTTTTTTCCCCTCCAAATT  150

seq1  TTATGTGTATGGGTGTTTTGCCTGCTTGTATGAACATGCACCACGTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTATGGGTGTTTTGCCTGCTTGTATGAACATGCACCACGTATGT  200

seq1  GCCGTGCCTGAGGAGGCCAGCAGGAGGCATCAGATCTCCTGGACCTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGCCTGAGGAGGCCAGCAGGAGGCATCAGATCTCCTGGACCTAATG  250

seq1  TGCTATGTACTGCTGTGCCTGATGGTGCTGGAAATCAAGCCAAAGTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGTACTGCTGTGCCTGATGGTGCTGGAAATCAAGCCAAAGTCCAC  300

seq1  AGGAAGCGCAGCCGGTGCTATACAGCTGCAACCACAGCAGTTCTAATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCGCAGCCGGTGCTATACAGCTGCAACCACAGCAGTTCTAATCAG  350

seq1  TTAGTCGGTCTTTGCGGACACAGTTTCTTTCCCAGAATTC  390
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCGGTCTTTGCGGACACAGTTTCTTTCCCAGAATTC  390