BAC Information

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BAC

Clone NameB6Ng01-176H03
Chromosome7 (Build37)
Map Location 127,834,791 - 127,977,590
singlet/doubletdoublet
Overlap geneBC030336, E030013G06Rik, EG436008
Upstream geneBC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik
Downstream geneLOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556, Hs3st2, Usp31, Scnn1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176H03.bB6Ng01-176H03.g
ACCGA003977GA003978
length1,2101,035
definitionB6Ng01-176H03.b B6Ng01-176H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,834,791 - 127,835,694)(127,976,556 - 127,977,590)
sequence
gaattctttagtatgcatatagttttactgcataacactgtataacaaag
acaaagcaaatttatatattgatgagaaggataggcttctttaatttaca
taaaggttcagtctcagctgaatatttgctactgcaaggcatagagcatc
atcaacatttttcagctgatcaatattttgatttgatgattgtcagtgct
gagaatgctacttcacataaatacatagtacaaaatagcagaaatcgatt
taaggccatgtcaggaatggcgggcagttctgtcctaatcccaagccaaa
atcatttaatgaattttctttaatgaaactgaagtcagcacctcaaaata
gtttttaaaaatcaaacattcttgcacagtataatcaaaagataacttaa
tttgataaatgctaaagaatgctaacaggaaaacactacaataaaaactg
tagttcacaacctagaggagtctcaggcctgagctggggtgtctcaggca
gtgttcttttgctttacatggaaagcctgcattcagttcactgcaaaatg
caagtgtgtgtagagccaagggtgcagtgagttcacacagcacacgggcc
agcaggggtagaaacgtctcagctttgttatggcgattttgcattggttt
ctgtttacttcattttcagaaaccttttactgctggtcattggtgccata
gatttaactccagctcttaagaggcagaggcaggtggatcttagtcaggt
ctacagagggagttccaggacagcagacttccagagaaaccctgtcttgg
aaaaaactaaaaaaaaaagaaggggtgggggactgtagagatggctcaga
agttaagagtactttactgactgctcttccagaggtcctgagttcaattc
ccagcaaccacatggtggctcacaaccatctgtaatgggatctgatgccc
tcttctggtgtgtctgaagacacctacaatgcactcatataaatgaaaag
aaagaaatgtctgagtttgggctttcattgtactgcagagctgttgtaga
gactgctacctacagagtggtatttttttgaaatctttttgttccttagc
catatcccataagggaaatacaaccaagctcagccagtaagcttctttgc
ctgcagccaagtcttaattgagacctcagatcaatgcggtgtggtctagg
gagagaaccg
gaattcttgagctggcgatctatgctgctacgtagtgctcaggccttagt
cttgttgctttgagggggaagagacggagaaacccagaaaataagtaaat
tgattcttggctagacaataatgtgaacatgtaaggctgccctaaaaaca
tatttctcaggaagagaaggttgaaagagggagtttagagaagggggggg
gcatttggatgataaaaatttatcagtgaaggaagttcaactgccagttg
tgaaggttagagttgatggtcaattagacaggatctgcaagcactggcag
gcacacctgtcaggggttaggttagattaaggtagtctctaggcctgttg
atggattatgtgacagagctcctccaggaggttgaggtgggaacccattc
taatagtgggcagtaccatctcagaacttgggtaaacatgacagtctctt
ttctttctgactacagacacaatgtgaccagctgcttcatgttccagacg
ctaactttgctcacacaatggacgtatgaactatgaggcaagataaaccc
tttcttaagttgctagtgtcagggttttgtttgtttttcccaaacagggt
ttctctgttgtagccttggtggtcctgcacctcactctgtagaccaggct
ggccttgaactcagagatctgcttacctttgcctccaagtgctagaataa
aagtcactacccagctcgcccaagtatttcatcatagcatcaggagaagg
aagtatgatggccaacctcggacagcctgagatttgtaggtatgggataa
ggaagtagagcccagagttcaaccccaaaccctggaacagaataaggctg
caatagacataaaccatgtgttacatttcccactggaccttgggaagttc
ttccaaatgatctcagctacagagcagaagccctcaccttctgatatttc
aagtagtgatggcctccaatccctatcttacattgacgtaacaaacccta
cttgttaagtgtgggctctaataatggaataaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_127834791_127835694
seq2: B6Ng01-176H03.b_359_1256

seq1  ATTTTCTTTAATGAAACTGAAGTCAGCACCTCAAAATAGTTTTTAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTAATGAAACTGAAGTCAGCACCTCAAAATAGTTTTTAAAAAT  50

seq1  CAAACATTCTTGCACAGTATAATCAAAAGATAACTTAATTTGATAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTCTTGCACAGTATAATCAAAAGATAACTTAATTTGATAAATGC  100

seq1  TAAAGAATGCTAACAGGAAAACACTACAATAAAAACTGTAGTTCACAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATGCTAACAGGAAAACACTACAATAAAAACTGTAGTTCACAACC  150

seq1  TAGAGGAGTCTCAGGCCTGAGCTGGGGTGTCTCAGGCAGTGTTCTTTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGTCTCAGGCCTGAGCTGGGGTGTCTCAGGCAGTGTTCTTTTGC  200

seq1  TTTACATGGAAAGCCTGCATTCAGTTCACTGCAAAATGCAAGTGTGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGGAAAGCCTGCATTCAGTTCACTGCAAAATGCAAGTGTGTGTA  250

seq1  GAGCCAAGGGTGCAGTGAGTTCACACAGCACACGGGCCAGCAGGGGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGGGTGCAGTGAGTTCACACAGCACACGGGCCAGCAGGGGTAGA  300

seq1  AACGTCTCAGCTTTGTTATGGCGATTTTGCATTGGTTTCTGTTTACTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTCTCAGCTTTGTTATGGCGATTTTGCATTGGTTTCTGTTTACTTCA  350

seq1  TTTTCAGAAACCTTTTACTGCTGGTCATTGGTGCCATAGATTTAACTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAAACCTTTTACTGCTGGTCATTGGTGCCATAGATTTAACTCCA  400

seq1  GCTCTTAAGAGGCAGAGGCAGGTGGATCTTAGTCAGGTCTACAGAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAAGAGGCAGAGGCAGGTGGATCTTAGTCAGGTCTACAGAGGGAG  450

seq1  TTCCAGGACAGCAGACTTCCAGAGAAACCCTGTCTTGGAAAAAACTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCAGACTTCCAGAGAAACCCTGTCTTGGAAAAAACTAAAA  500

seq1  AAAAAAGAAGGGGTGGGGGACTGTAGAGATGGCTCAGAAGTTAAGAGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAGGGGTGGGGGACTGTAGAGATGGCTCAGAAGTTAAGAGTAC  550

seq1  -TTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACA  599
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACA  600

seq1  TGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTG  650

seq1  TCTGAAGACACCTACAATGCACTCATATAAATGAAAAGAAAGAAATGTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGACACCTACAATGCACTCATATAAATGAAAAGAAAGAAATGTCT  700

seq1  GAGTTTGGGCTTTCATTGTACTGCAGAGCTGTTGTAGGAGGACTGCTACC  749
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  GAGTTTGGGCTTTCATTGTACTGCAGAGCTGTTGTAG--AGACTGCTACC  748

seq1  TACAGAGGTTGGTATTTTTTTGAAATTCTTTTTG-TCCTTAGGCAATATC  798
      |||||||  |||||||||||||||| |||||||| |||||| || |||||
seq2  TACAGAG--TGGTATTTTTTTGAAA-TCTTTTTGTTCCTTA-GCCATATC  794

seq1  CCATTAAGGGAATACAACCAAAAGCTCAGCAGGTAAAGGCT------CTT  842
      |||| | || |||||||||  |||||||||  ||||  |||      | |
seq2  CCATAAGGGAAATACAACC--AAGCTCAGCCAGTAA--GCTTCTTTGCCT  840

seq1  GCTGCCAAGCACAGGGTCCT-AGTGAGCCCCAGGACCCATGCG--GTGGT  889
      || |||||       ||| | | |||| ||   || | |||||  |||||
seq2  GCAGCCAA-------GTCTTAATTGAGACCTCAGATCAATGCGGTGTGGT  883

seq1  ATAAGGAGAGAACCG  904
       || |||||||||||
seq2  CTAGGGAGAGAACCG  898

seq1: chr7_127976556_127977590
seq2: B6Ng01-176H03.g_65_1098 (reverse)

seq1  CCTTATTCCATTATTAGAG-CCACACTTA--CAGTAGGGTTTGTTACCGT  47
      ||||||||||||||||||| |||||||||   |||||||||||||| |||
seq2  CCTTATTCCATTATTAGAGCCCACACTTAACAAGTAGGGTTTGTTA-CGT  49

seq1  CAATGTAAAGATAAGGAATTGGAGGCCATCACTAACTTGAAATATCAGAA  97
      |||||| ||||| ||| |||||||||||||||| ||||||||||||||||
seq2  CAATGT-AAGAT-AGGGATTGGAGGCCATCACT-ACTTGAAATATCAGAA  96

seq1  GGTGAGGGCTTCTGCTCTGTAGCTGAGATCATTTGGAAGAACTTCCCAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGGCTTCTGCTCTGTAGCTGAGATCATTTGGAAGAACTTCCCAAG  146

seq1  GTCCAGTGGGAAATGTAACACATGGTTTATGTCTATTGCAGCCTAATTCT  197
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCCAGTGGGAAATGTAACACATGGTTTATGTCTATTGCAGCCTTATTCT  196

seq1  GTTCCAGGGTTTGGGGTTGAACTCTGGGCTCTACTTCCTTATCCCATACC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGGTTTGGGGTTGAACTCTGGGCTCTACTTCCTTATCCCATACC  246

seq1  TACAAATCTCAGGCTGTCCGAGGTTGGCCATCATACTTCCTTCTCCTGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCTCAGGCTGTCCGAGGTTGGCCATCATACTTCCTTCTCCTGAT  296

seq1  GCTATGATGAAATACTTGGGCGAGCTGGGTAGTGACTTTTATTCTAGCAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATGAAATACTTGGGCGAGCTGGGTAGTGACTTTTATTCTAGCAC  346

seq1  TTGGAGGCAAAGGTAAGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCAAAGGTAAGCAGATCTCTGAGTTCAAGGCCAGCCTGGTCTAC  396

seq1  AGAGTGAGGTGCAGGACCACCAAGGCTACAACAGAGAAACCCTGTTTGGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGGTGCAGGACCACCAAGGCTACAACAGAGAAACCCTGTTTGGG  446

seq1  AAAAACAAACAAAACCCTGACACTAGCAACTTAAGAAAGGGTTTATCTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAAACCCTGACACTAGCAACTTAAGAAAGGGTTTATCTTG  496

seq1  CCTCATAGTTCATACGTCCATTGTGTGAGCAAAGTTAGCGTCTGGAACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGTTCATACGTCCATTGTGTGAGCAAAGTTAGCGTCTGGAACAT  546

seq1  GAAGCAGCTGGTCACATTGTGTCTGTAGTCAGAAAGAAAAGAGACTGTCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCTGGTCACATTGTGTCTGTAGTCAGAAAGAAAAGAGACTGTCA  596

seq1  TGTTTACCCAAGTTCTGAGATGGTACTGCCCACTATTAGAATGGGTTCCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCCAAGTTCTGAGATGGTACTGCCCACTATTAGAATGGGTTCCC  646

seq1  ACCTCAACCTCCTGGAGGAGCTCTGTCACATAATCCATCAACAGGCCTAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAACCTCCTGGAGGAGCTCTGTCACATAATCCATCAACAGGCCTAG  696

seq1  AGACTACCTTAATCTAACCTAACCCCTGACAGGTGTGCCTGCCAGTGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCTTAATCTAACCTAACCCCTGACAGGTGTGCCTGCCAGTGCTT  746

seq1  GCAGATCCTGTCTAATTGACCATCAACTCTAACCTTCACAACTGGCAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCCTGTCTAATTGACCATCAACTCTAACCTTCACAACTGGCAGTT  796

seq1  GAACTTCCTTCACTGATAAATTTTTATCATCCAAATGCCCCCCCCCTTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCCTTCACTGATAAATTTTTATCATCCAAATGCCCCCCCCCTTCT  846

seq1  CTAAACTCCCTCTTTCAACCTTCTCTTCCTGAGAAATATGTTTTTAGGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCCCTCTTTCAACCTTCTCTTCCTGAGAAATATGTTTTTAGGGC  896

seq1  AGCCTTACATGTTCACATTATTGTCTAGCCAAGAATCAATTTACTTATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACATGTTCACATTATTGTCTAGCCAAGAATCAATTTACTTATTT  946

seq1  TCTGGGTTTCTCCGTCTCTTCCCCCTCAAAGCAACAAGACTAAGGCCTGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTCTCCGTCTCTTCCCCCTCAAAGCAACAAGACTAAGGCCTGA  996

seq1  GCACTACGTAGCAGCATAGATCGCCAGCTCAAGAATTC  1035
      ||||||||||||||||||||||||||||||||||||||
seq2  GCACTACGTAGCAGCATAGATCGCCAGCTCAAGAATTC  1034