BAC Information

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BAC

Clone NameB6Ng01-177H22
Chromosome7 (Build37)
Map Location 32,143,708 - 32,144,678
singlet/doubletsinglet
Overlap geneLOC100043326
Upstream geneLrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe
Downstream geneEG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358, LOC668351, EG384593, LOC100043351, LOC100043352, LOC100043353, EG384594, LOC100043838, EG668361, LOC668362, EG624584, LOC100043355, LOC546951, EG626740, EG668371, EG668377, LOC100043842, LOC634929, EG668379, EG668381, LOC668386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177H22.bB6Ng01-177H22.g
ACCGA004750GA004751
length1,128993
definitionB6Ng01-177H22.b B6Ng01-177H22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcctagctgccttgaagccagtattgtgctagcagaatttaga
tgaagaaatagaactctcagcaactcctgtaccatgtctgcctgaatgct
gccatgtcctactttgatgataatggactgaacttctgaacctgtaagtc
agccccaattcagtgctgtctttataagagttgcattggtcatggtgtct
gttaacagctgtaagaccctaattaaaacacttttaaaacagagacatgg
gtatgatgtggagatggagcagagactgagggaatgaccaaccaataatg
agtcaaatttgagatccatcccatgggcaagtatcagtcactcacactat
taatgatattctaatctgcttgcaaacacgagtctagtacagctgtcctc
tgagaaggtccacatagcatctgactcagacagatgaagacacccacatg
agaagagtggatgcttcttgggtacctctatagaacaggggaaaggaatg
ctgggaaggtacagaattgtaaactcattaagttagcacagatgagaaaa
tactttatctcaattgccaaatataatggactggacattataggtgtata
taataccttatggttttcataattgtcataatgttactcaatttatatct
atgagaaaggagacatttattagactaaaaaggggaatttttgaggtttt
gtcttaatgtcggtcgtaatgctaagcgtagactccccacccaaccaaga
aatggagtctgcatatagacctatgattctgcccccaagttatttctgat
tgggaaaataagatgccaacagccaattactgagcatagagacatagatg
tggtttaggtttcattggatttggatttgaggaggatcatggagaagaga
tggtgcaggaagaagctaccacatccagtttaggttgtttcaatttcccc
atatatgagtaggactcaactcatgtctcttagggtcagtaagacctctt
gctgactgactacttaaacactaagaaaattcggtttgttttgaacttgc
tgcctaattttggaaatatggaagcatcgagggtcggaactcttagagcc
ttagaaccccatcgaacgcttgctaaat
gaattccagggaaacctggtctacatagtaacaacaacaaaaaatctgca
atggctctcccaggatcaccctgccagtcagggtcagtcaccctgatctc
agtgacctcacaagtcatttctctcactgtctctctgatcctctgaggac
ctcacatgattcctgttcaggacatagacacagggcacagaacagagctg
caggtatttattagaatcagcctaagaaactgaaggatgagggcacaggt
gtcaggaatccaacttcaggtgaggaagaggacaggtcactaagatggtg
cttagatcagacatgttgcaatgatggattgcctaaaacccagtaacttc
tacatccatttcttggtaatcacacttaaaatttttgtcatagtgtcatt
gctatagtatttcaagcattctgagctgaagaacatgcttgcctgcaaaa
caaaaatacagacagggacaggggtgggtgcaggcaaggtgtaggacctc
agcaaggctccccaaacacccacaaagagactgccccttatacacaggaa
agaaaatcccctgaaatgattcaggtttccagcaacagagtctgcctcaa
gggaactggagcccacccacagccttcaggaggaaacctgaaagccacca
tagtcaggcagggaaaggatagaaagttctggaaggcatgatgggggcta
ggtctagagagggacaagatagctgaatatgagtttggttatgcctccta
taccctgaggacatctctccaggcacattggctttgtggctgtgttaaca
tactttcccctgtgtgacctgttagaaggaaattcctttttggaatagca
ccgtgggtttgcagacctgatactcaactaaagtacttggggaacagggt
ggagagctgcactgttcaaaataaacattctctgcagttccaggttaagt
ttggaacaaaaatgacacggaaacagcttggtggtggagacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_32143708_32144678
seq2: B6Ng01-177H22.g_67_1059

seq1  GAATTCCAGGGAAACCTGGTCTACATAGTAACAACAACAAAAAATCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAAACCTGGTCTACATAGTAACAACAACAAAAAATCTGCA  50

seq1  ATGGCTCTCCCAGGATCACCCTGCCAGTCAGGGTCAGTCACCCTGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTCCCAGGATCACCCTGCCAGTCAGGGTCAGTCACCCTGATCTC  100

seq1  AGTGACCTCACAAGTCATTTCTCTCACTGTCTCTCTGATCCTCTGAGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCTCACAAGTCATTTCTCTCACTGTCTCTCTGATCCTCTGAGGAC  150

seq1  CTCACATGATTCCTGTTCAGGACATAGACACAGGGCACAGAACAGAGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGATTCCTGTTCAGGACATAGACACAGGGCACAGAACAGAGCTG  200

seq1  CAGGTATTTATTAGAATCAGCCTAAGAAACTGAAGGATGAGGGCACAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTATTAGAATCAGCCTAAGAAACTGAAGGATGAGGGCACAGGT  250

seq1  GTCAGGAATCCAACTTCAGGTGAGGAAGAGGACAGGTCACTAAGATGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAATCCAACTTCAGGTGAGGAAGAGGACAGGTCACTAAGATGGTG  300

seq1  CTTAGATCAGACATGTTGCAATGATGGATTGCCTAAAACCCAGTAACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATCAGACATGTTGCAATGATGGATTGCCTAAAACCCAGTAACTTC  350

seq1  TACATCCATTTCTTGGTAATCACACTTAAAATTTTTGTCATAGTGTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCATTTCTTGGTAATCACACTTAAAATTTTTGTCATAGTGTCATT  400

seq1  GCTATAGTATTTCAAGCATTCTGAGCTGAAGAACATGCTTGCCTGCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAGTATTTCAAGCATTCTGAGCTGAAGAACATGCTTGCCTGCAAAA  450

seq1  CAAAAATACAGACAGGGACAGGGGTGGGTGCAGGCAAGGTGTAGGACCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACAGACAGGGACAGGGGTGGGTGCAGGCAAGGTGTAGGACCTC  500

seq1  AGCAAGGCTCCCCAAACACCCACAAAGAGACTGCCCCTTATACACAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCTCCCCAAACACCCACAAAGAGACTGCCCCTTATACACAGGAA  550

seq1  AGAAAATCCCCTGAAATGATTCAGGTTTCCAGCAACAGAGTCTGCCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCCCCTGAAATGATTCAGGTTTCCAGCAACAGAGTCTGCCTCAA  600

seq1  GGGAACTGGAGCCCACCCACAGCCTTCAGGAGGAAACCTGAAAGCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTGGAGCCCACCCACAGCCTTCAGGAGGAAACCTGAAAGCCACCA  650

seq1  TAGTCAGGCAGGG-AAGGATAGAAGGTTCTGGAAGGCATGATGGGGGCTA  699
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  TAGTCAGGCAGGGAAAGGATAGAAAGTTCTGGAAGGCATGATGGGGGCTA  700

seq1  GGTCTAGAGAGGGACAAGATAGCTGAATATGAGTTTGGTTATGCCTCCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGAGAGGGACAAGATAGCTGAATATGAGTTTGGTTATGCCTCCTA  750

seq1  TA-CCTGAGGACATCTCTCCAGGCACATTGGCTTTGTGGCTGTGTTAACA  798
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACCCTGAGGACATCTCTCCAGGCACATTGGCTTTGTGGCTGTGTTAAC-  799

seq1  ATAC-TTCCCCTGTGTGACCTTGTTAGAA-GAAATTCCTTTTTGG-ATAG  845
      |||| ||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  ATACTTTCCCCTGTGTGACC-TGTTAGAAGGAAATTCCTTTTTGGAATAG  848

seq1  CACCGTGGGTTTGCAGGACCTGATACTCAACTAAAAGTACTTTGGGAAAC  895
      ||||||||||||||| |||||||||||||||| ||||||| ||||| |||
seq2  CACCGTGGGTTTGCA-GACCTGATACTCAACT-AAAGTAC-TTGGGGAAC  895

seq1  AGGGT-GAGAGCTGCACTGTTCAAAATATACA-TCTCTGCAG-TCCA-GT  941
      ||||| |||||||||||||||||||||| ||| ||||||||| |||| ||
seq2  AGGGTGGAGAGCTGCACTGTTCAAAATAAACATTCTCTGCAGTTCCAGGT  945

seq1  TAAGTTTGAAACAGAGATGACA-GGAGACAG-----------------  971
      |||||||| |||| | |||||| ||| ||||                 
seq2  TAAGTTTGGAACAAAAATGACACGGAAACAGCTTGGTGGTGGAGACAG  993