BAC Information

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BAC

Clone NameB6Ng01-178B09
Chromosome7 (Build37)
Map Location 20,724,985 - 20,726,126
singlet/doubletsinglet
Overlap genenone
Upstream geneQpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21
Downstream geneEG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566, LOC100043569, EG436135, LOC100042996, EG667273, EG667268, EG667262, EG667259, LOC100043574
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178B09.bB6Ng01-178B09.g
ACCGA005173GA005174
length1,137741
definitionB6Ng01-178B09.b B6Ng01-178B09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagttgtagaaagataagttgagggcttttgagaaaattttatac
tacttatccacacgccaaaaaacaaaacaaaacaaaacaaaacaaaccca
ccatatatttctggcaaaaccacctgtgtcccgatcacagaaatgaacat
aggcttacatatgtgtcccccatgtgaaaaaaatccccacctgctaacaa
gtttcattgtttcataattttctccagattccctccaaaattactaacac
aatcactgttacaccctttgcaagctgatgcttagtctgcattttacttg
tttatatgttttctgtaggaacacaagggcctccatccaccagataaaat
tcattatctcacatgcatatgttacactgaatgctgttttctgctaagta
ctaatctaggacacagacatttctttgagatgaaagcaaaatattaacct
attcaagttagcctgcagacttcagaaagaaataatgtttcatgttggct
tcagaagacaattttcaccgaagaaaggagaagagaattttaagcagaag
cccatggatggaagaatctcaccttctgagcctcagtcaggatgaagatg
ctcatctgaaggccacctgcagagcacagctcctatagaagcatatttcc
tagtgcctggattgaggaacttctctgtgtcactctttgcttgaggaaga
atgcaatgaaattcggaatggtttcttattctccatgcaatgctgtgaag
gtaacccaacacagtcccatttccagtctcataaaataatagggcaccgg
gacatgacatctttcagagagtttattattgtgtcatctgtggcgtccgc
acatttgtctgcatggtgcctttgggatacctccaatgaaggaaaatcat
ttatccccagagcaaacctccattcctttctgatgtttactgatgatgtc
taggagttgttagatgttaatgagtacctgggcagaagttagggaagggt
tttcatgtttccttcgggagatcttaagttctgaattgatctgtagtcag
atgtgattgggggcgcctccagttagacagggactcatatgtgagtttct
acagagtactttcctccctactattcacctcatgcaa
gaattcaaaatcaacatgattgatttttatgtaaaagtttagatttgtga
ttcctttaagcttttttcagattattttagagataaataataaaatactt
gtccctttctttgtaatttctgccttccaggaagagaaacttgatgagaa
aactgccttgcatgtgtacactttgtgaatttataataagttccttactt
ataaatgtacctaggttagatgccagcaagattttgatgaagggactctg
gtatatctgtctcgtatgaggctatgccagggcctggcaaatgcagatgt
ggatgctcacagtaatctgtaagatggaacacagtgcccccaatggagaa
gctagagaaagcacccaaggagctgaaggggtctgcaaccctattggtgg
aacaacaatatgaactaaccagtacccccagagcttgtatctctagctgc
atatgtagcagaagatggcctagtcagccatcactgggaagggaggcccc
tggtattgcaaactttatatgtcccagtacacaggaatgccagggccaag
aagcaggagtgggttggtaggggagcagggcatggggggagggtataggg
aactttcgggatagcatttgaaattttgaaatgtacataaagaaaaaatc
taattaaaaaataaaataaaatctaaaaaaaaaatgtacctgggtgtttg
gggataattcgttttctttacctttactatataatgttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20724985_20726126
seq2: B6Ng01-178B09.b_48_1184

seq1  GAATTCAGTTGTAGAAAGATAAGTTGAGGGCTTTTGAGAAAATTTTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGTAGAAAGATAAGTTGAGGGCTTTTGAGAAAATTTTATAC  50

seq1  TACTTATCCACACGCCAAAAAACAAAACAAAACAAAACAAAACAAACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCCACACGCCAAAAAACAAAACAAAACAAAACAAAACAAACCCA  100

seq1  CCATATATTTCTGGCAAAACCACCTGTGTCCCGATCACAGAAATGAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATTTCTGGCAAAACCACCTGTGTCCCGATCACAGAAATGAACAT  150

seq1  AGGCTTACATATGTGTCCCCCATGTGAAAAAAATCCCCACCTGCTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACATATGTGTCCCCCATGTGAAAAAAATCCCCACCTGCTAACAA  200

seq1  GTTTCATTGTTTCATAATTTTCTCCAGATTCCCTCCAAAATTACTAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTGTTTCATAATTTTCTCCAGATTCCCTCCAAAATTACTAACAC  250

seq1  AATCACTGTTACACCCTTTGCAAGCTGATGCTTAGTCTGCATTTTACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGTTACACCCTTTGCAAGCTGATGCTTAGTCTGCATTTTACTTG  300

seq1  TTTATATGTTTTCTGTAGGAACACAAGGGCCTCCATCCACCAGATAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGTTTTCTGTAGGAACACAAGGGCCTCCATCCACCAGATAAAAT  350

seq1  TCATTATCTCACATGCATATGTTACACTGAATGCTGTTTTCTGCTAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATCTCACATGCATATGTTACACTGAATGCTGTTTTCTGCTAAGTA  400

seq1  CTAATCTAGGACACAGACATTTCTTTGAGATGAAAGCAAAATATTAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTAGGACACAGACATTTCTTTGAGATGAAAGCAAAATATTAACCT  450

seq1  ATTCAAGTTAGCCTGCAGACTTCAGAAAGAAATAATGTTTCATGTTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTTAGCCTGCAGACTTCAGAAAGAAATAATGTTTCATGTTGGCT  500

seq1  TCAGAAGACAATTTTCACCGAAGAAAGGAGAAGAGAATTTTAAGCAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGACAATTTTCACCGAAGAAAGGAGAAGAGAATTTTAAGCAGAAG  550

seq1  CCCATGGATGGAAGAATCTCACCTTCTGAGCCTCAGTCAGGATGAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGATGGAAGAATCTCACCTTCTGAGCCTCAGTCAGGATGAAGATG  600

seq1  CTCATCTGAAGGCCACCTGCAGAGCACAGCTCCTATAGAAGCATATTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGAAGGCCACCTGCAGAGCACAGCTCCTATAGAAGCATATTTCC  650

seq1  TAGTGCCTGGATTGAGGAACTTCTCTGTGTCACTCTTTGCTTGAGGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTGGATTGAGGAACTTCTCTGTGTCACTCTTTGCTTGAGGAAGA  700

seq1  ATGCAATGAAATTCGGAATGGTTTCTTATTCTCCATGCAATGCTGTGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGAAATTCGGAATGGTTTCTTATTCTCCATGCAATGCTGTGAAG  750

seq1  GTAACCCAACACAGTCCCATTTCCAGTCTCATAAAATAATAGGGCACCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCAACACAGTCCCATTTCCAGTCTCATAAAATAATAGGGCACCGG  800

seq1  GACATGACATCTTTCAGAGAGTTTATTATTGTGTCATCTGTGGCGTCCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACATCTTTCAGAGAGTTTATTATTGTGTCATCTGTGGCGTCCGC  850

seq1  ACATTTGTCTGCATGGTGCCTTTGGGATACCTCCAATGAAGGAAAATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTCTGCATGGTGCCTTTGGGATACCTCCAATGAAGGAAAATCAT  900

seq1  TTATCCCCAGAGCAAACCTCCATTCCTTTCTGATGTTTACTGATGATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCAGAGCAAACCTCCATTCCTTTCTGATGTTTACTGATGATGTC  950

seq1  TAGGAGTTTGTTAGATGTTAATGAGTACCTGGGCAGAAGTTAGGGAAGGG  1000
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAG-TTGTTAGATGTTAATGAGTACCTGGGCAGAAGTTAGGGAAGGG  999

seq1  TTTTCATGTTTCCTTCGGGAGAATCTAAGTTCTGAATTGATCTTGTAGTC  1050
      ||||||||||||||||||||||   ||||||||||||||||| |||||||
seq2  TTTTCATGTTTCCTTCGGGAGATCTTAAGTTCTGAATTGATC-TGTAGTC  1048

seq1  AGATGTGAATTGGGGCG-CTCCAGGTTAGAACAAGGGACTCATTATGTGA  1099
      |||||||| | |||||| ||||| ||||||   ||||||||| |||||||
seq2  AGATGTGATTGGGGGCGCCTCCA-GTTAGA--CAGGGACTCA-TATGTGA  1094

seq1  GTTTCTACAGAGTACTTTCCTCCCTACTATTTCACTCATGCAA  1142
      |||||||||||||||||||||||||||||||   |||||||||
seq2  GTTTCTACAGAGTACTTTCCTCCCTACTATTCACCTCATGCAA  1137