BAC Information

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BAC

Clone NameB6Ng01-178F10
Chromosome7 (Build37)5 (Build37)
Map Location 52,739,210 - 52,739,488108,324,153 - 108,324,648
singlet/doubletsingletsinglet
Overlap geneDhdh
Upstream gene2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax
Downstream geneNucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F10.bB6Ng01-178F10.g
ACCGA005354GA005355
length625491
definitionB6Ng01-178F10.b B6Ng01-178F10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,739,210 - 52,739,488)(108,324,153 - 108,324,648)
sequence
gaattcattaactctttgtgagccagggagaaaggaaaagaaaggaacaa
gcacagacacacacacacacacacacacacacacacacacacacacacac
tgggtgaagcagaaaagggtcacactaccactttattggtcctagttttt
ttttttttttttttttggtttttcgagacagggtttctctgtgtagccct
ggctgtcctggaactcactctgtagaccaagctggcctcgaactcagaaa
tccgcctgcctctgcctcccgagtgctgggattaaaggcgtgcgccacca
cgcccggctggtcctagtttttataccttctcaggaaaattgattacatg
gttttctaagcacttttgcattccataagttcacagtaagtttaaggtaa
tatttaatgtcataggtcggtaagctttaaggaattatagtagaattgtt
tacatgtctttccattgagactagtacctgaccgaacattccttatctat
tttctagctctacaagttcattataagtttaaaccaatagtttttttgtt
tttttgtttttttgttttttttgtttgtttgtttgttttttttttacttt
tcttcgagacagggtttctctgtat
tttcttacatgtttgtacaaatgtgcacctcatgcattcatgagcacagt
ggtccatcagaagaggatatggagtccctagaaatgaagttaaagacagt
tgtgagctgccactcttgtgctagaaatagaatcagtaattgagtgctct
taactgttggaccatttttccatcctatggaaaagagtcttaaataatga
agtgccacatctaagtagcacctctgttggttttttgttgttgttgttgt
tgttttttgtttgtttgtttgtttgtttttcgagacagggtttctctgta
tagctctggctgtcctggaactcactctgtagaccaggctggcctcatgg
cctcaaactcagaaatccgcctgcctccgcctcctgagtgctgggattaa
aggcatgcaccaccacgccccgctgttggttttttttttttttttttttt
aaagatttatttatttatttttctattatatgttaagttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52739210_52739488
seq2: B6Ng01-178F10.b_193_672 (reverse)

seq1  ATACAGAGAAACCCTGTCTCGAA------------------AAACA---A  29
      |||||||||||||||||||||||                  |||||   |
seq2  ATACAGAGAAACCCTGTCTCGAAGAAAAGTAAAAAAAAAACAAACAAACA  50

seq1  AACAAAACAAAGCAAAACAAAGCAAAACAAAAAAA-------GTTAAAGT  72
      ||||||| |||  |||| | |  ||||||||||||        ||||| |
seq2  AACAAAAAAAACAAAAAAACAAAAAAACAAAAAAACTATTGGTTTAAACT  100

seq1  T-------------------------TAAATAACGA--------------  83
      |                         || |||| ||              
seq2  TATAATGAACTTGTAGAGCTAGAAAATAGATAAGGAATGTTCGGTCAGGT  150

seq1  --------------------------------------------------  83
                                                        
seq2  ACTAGTCTCAATGGAAAGACATGTAAACAATTCTACTATAATTCCTTAAA  200

seq1  -------------------TAAAT--------------------------  88
                         |||||                          
seq2  GCTTACCGACCTATGACATTAAATATTACCTTAAACTTACTGTGAACTTA  250

seq1  ----TTGCAA------TTA---------GTATT--GTTTT----------  107
           |||||      |||         ||| |   ||||          
seq2  TGGAATGCAAAAGTGCTTAGAAAACCATGTAATCAATTTTCCTGAGAAGG  300

seq1  -----------GG----GCCGGGTGTGGTGGTGCACGCCTTTAATCTTAG  142
                 ||    |||||| ||||||| ||||||||||||||  ||
seq2  TATAAAAACTAGGACCAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAG  350

seq1  CACTTGGGAGGCAGAGGCAGGCGGATTTTTGAGTTCGAGGCCAGCCTGGT  192
      |||| ||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCTTGGT  400

seq1  CTACAAAGTGAGTTCCAGGACACCCAGGGCTACACAGAGAAACCCTGTCT  242
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  CTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  450

seq1  CAAAAAAACCAAAAAAATAACCCAAAAAACAAAAAAA  279
      |  ||||||||||||||      |||||| |||||||
seq2  C-GAAAAACCAAAAAAA------AAAAAAAAAAAAAA  480

seq1: chr5_108324153_108324648
seq2: B6Ng01-178F10.g_64_560

seq1  GAATTCTTTCTTACATGTTTGTACAAATGTGCACCTCATGCATTCATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTACATGTTTGTACAAATGTGCACCTCATGCATTCATGAG  50

seq1  CACAGTGGTCCATCAGAAGAGGATATGGAGTCCCTAGAAATGAAGTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGTCCATCAGAAGAGGATATGGAGTCCCTAGAAATGAAGTTAAA  100

seq1  GACAGTTGTGAGCTGCCACTCTTGTGCTAGAAATAGAATCAGTAATTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGTGAGCTGCCACTCTTGTGCTAGAAATAGAATCAGTAATTGAG  150

seq1  TGCTCTTAACTGTTGGACCATTTTTCCATCCTATGGAAAAGAGTCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAACTGTTGGACCATTTTTCCATCCTATGGAAAAGAGTCTTAAA  200

seq1  TAATGAAGTGCCACATCTAAGTAGCACCTCTGTTGGTTTTTTGTTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGTGCCACATCTAAGTAGCACCTCTGTTGGTTTTTTGTTGTTGT  250

seq1  TGTTGTTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGGGTTTC  300

seq1  TCTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCC  350

seq1  TCATGGCCTCAAACTCAGAAATCCGCCTGCCTCCGCCTCCTGAGTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCTCAAACTCAGAAATCCGCCTGCCTCCGCCTCCTGAGTGCTGG  400

seq1  GATTAAAGGCATGCACCACCACGCCCCGCTGTTGGTTTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGGCATGCACCACCACGCCCCGCTGTTGGTTTTTTTTTTTTTTT  450

seq1  TTTTTTAAAGATTTATTTATTTATTTATTTATTATATG-TAAGTACA  496
      |||||||||||||||||||||||||| | ||||||||| ||||| ||
seq2  TTTTTTAAAGATTTATTTATTTATTTTTCTATTATATGTTAAGTTCA  497