BAC Information

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BAC

Clone NameB6Ng01-178F14
Chromosome7 (Build37)
Map Location 117,476,395 - 117,564,561
singlet/doubletdoublet
Overlap geneSbf2
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368
Downstream geneLOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178F14.bB6Ng01-178F14.g
ACCGA005362GA005363
length1,030910
definitionB6Ng01-178F14.b B6Ng01-178F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,476,395 - 117,477,412)(117,563,645 - 117,564,561)
sequence
gaattcacagcagctgtgcttaccgacatgagctttggccatgactgaac
ctatcaacctattatcccagagggaggaagatctcatgaggccccaccct
cacgcaagagctgtaggtgtgccgggggaggaagagacattttcctcagt
ggagtgagttaggttcccatggccgtgtaaataagcccttaccgtgcaac
cgtaatgaaattcactggattaccaaaggcaaaaccacaaccacgacaat
agaagggggttcacagaagggaagaaggaaggaatcagcagggtaggaga
gaaacaatgagagtaacaaagtgtggatataataaaaatataccatattt
acaatgaatgtcatattaggggtattaagtgctaataaacaaaaacctaa
ggtattaaatgaaatataatacaaataaaatggccgggtacaatgtcctt
gaagtggaaaaggcagagtttctaattggtctttgttatacaacttaagg
tttatttttccatgatgataatttctgttttagagattcaatgttttctc
atgctagtgtgatggccgtgaaacactgggaatatgctataaacactgca
tttacacttttacaaggctggactttagagtaaggaaattatgttaaaaa
gacacttatattttgtttatattgtgtattgcacaggaagagacttctgt
tttgtgctcagctttttggttgtgagtctagccttttaatggctgagcta
tctccacagcttaacaacttctactaccacaaccacaaccactacactac
ttctacttttctcttcttcctcccattttttttcccccccaagataaagt
ttctctgtgtagccctggctgggccatgaactcagagatctgccttgccc
tgtcccaagtgctgagatggaaaggcaatgcacccatcataaccttggtg
gcttcagtttaactttctaactccaggcccaccgactcaaaaacccacct
tgattattcattatggaggtttaaacagta
gaattcaattctggtgactttgttaaatacttgacaggacatatttgaat
tttcagtgtggttgcttgaaggttcttttggtcacatggaattctcttgt
tctcagacccttcctgctgccttgagggcccttaaaggaaaagcagcaag
acagtgtctcactgatgaactgggcttgcacgttcagcagaaccgggcaa
tactggaccatcaacagtttgactacataataaggatgatgaactgtact
ctacaggtaatcttgagtgattttagattattcccattttgcaaatacct
tttttccccaaaagatatattaattactgaactatcaatgtcttgaggct
gctatggctaaaaaagagctgaaatccatggagtcacttgctccttagct
gatgtaaatcctcacttctttgttctttccttgttttctagtgacaaata
ctttgttactttactgattttataatatgagcaatatattaaaggcccat
agtcgtatattaccaaattttatacttatgtctgttaatgtagtttttgg
ctattttattgggttttaatgttttattacaccctaatcaaaccttcaac
actaggtaggagagaaagaaggttagagggaaagggaacatacatctctt
tggactacttcctactgattaggatgttgagtccccttgaggcagtccaa
tcttcgtcatcagaatacctcaatttcttctcatcaaaccacaataacaa
cgaccaggagcagcacgggggcagcagtctcacaggctctcagggcctgg
ctgtgcatgaagcaaatcatgacacctgctgttaggtggcctcttatccc
catctgggactaaaacaaaaactattcacttacatagctgggttttttag
aaacaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_117476395_117477412
seq2: B6Ng01-178F14.b_46_1075

seq1  GAATTCACAGCAGCTGTGCTTACCGACATGAGCTTTGGCCATGACTGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCAGCTGTGCTTACCGACATGAGCTTTGGCCATGACTGAAC  50

seq1  CTATCAACCTATTATCCCAGAGGGAGGAAGATCTCATGAGGCCCCACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAACCTATTATCCCAGAGGGAGGAAGATCTCATGAGGCCCCACCCT  100

seq1  CACGCAAGAGCTGTAGGTGTGCCGGGGGAGGAAGAGACATTTTCCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCAAGAGCTGTAGGTGTGCCGGGGGAGGAAGAGACATTTTCCTCAGT  150

seq1  GGAGTGAGTTAGGTTCCCATGGCCGTGTAAATAAGCCCTTACCGTGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGTTAGGTTCCCATGGCCGTGTAAATAAGCCCTTACCGTGCAAC  200

seq1  CGTAATGAAATTCACTGGATTACCAAAGGCAAAACCACAACCACGACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATGAAATTCACTGGATTACCAAAGGCAAAACCACAACCACGACAAT  250

seq1  AGAAGGGGGTTCACAGAAGGGAAGAAGGAAGGAATCAGCAGGGTAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGGGTTCACAGAAGGGAAGAAGGAAGGAATCAGCAGGGTAGGAGA  300

seq1  GAAACAATGAGAGTAACAAAGTGTGGATATAATAAAAATATACCATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAATGAGAGTAACAAAGTGTGGATATAATAAAAATATACCATATTT  350

seq1  ACAATGAATGTCATATTAGGGGTATTAAGTGCTAATAAACAAAAACCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAATGTCATATTAGGGGTATTAAGTGCTAATAAACAAAAACCTAA  400

seq1  GGTATTAAATGAAATATAATACAAATAAAATGGCCGGGTACAATGTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAAATGAAATATAATACAAATAAAATGGCCGGGTACAATGTCCTT  450

seq1  GAAGTGGAAAAGGCAGAGTTTCTAATTGGTCTTTGTTATACAACTTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAAAAGGCAGAGTTTCTAATTGGTCTTTGTTATACAACTTAAGG  500

seq1  TTTATTTTTCCATGATGATAATTTCTGTTTTAGAGATTCAATGTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTCCATGATGATAATTTCTGTTTTAGAGATTCAATGTTTTCTC  550

seq1  ATGCTAGTGTGATGGCCGTGAAACACTGGGAATATGCTATAAACACTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGTGTGATGGCCGTGAAACACTGGGAATATGCTATAAACACTGCA  600

seq1  TTTACACTTTTACAAGGCTGGACTTTAGAGTAAGGAAATTATGTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTTTTACAAGGCTGGACTTTAGAGTAAGGAAATTATGTTAAAAA  650

seq1  GACACTTATA-TTTGTTTATATTGTGTATTGCACAGGAAGAGACTTCTG-  698
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  GACACTTATATTTTGTTTATATTGTGTATTGCACAGGAAGAGACTTCTGT  700

seq1  TTTGTGCTCAGCTTTTTGGTTGTGAGTCTAGCC-TTTAATGGCTGAGCTA  747
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGTGCTCAGCTTTTTGGTTGTGAGTCTAGCCTTTTAATGGCTGAGCTA  750

seq1  TCTCCACAGCTTAACAACTTCTACTACCACAACCACAACCACTACAACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTCCACAGCTTAACAACTTCTACTACCACAACCACAACCACTAC-ACTA  799

seq1  CTTCTACTTTTCCTCTTCTTCCTCC--ATTTTTTTCCCCCCCAAGATAAA  845
      ||||||||||| |||||||||||||   ||||||||||||||||||||||
seq2  CTTCTACTTTT-CTCTTCTTCCTCCCATTTTTTTTCCCCCCCAAGATAAA  848

seq1  GTTTCTCTGTGTAGCCCTGGCT-GGCCATGAACTCAGAGATCTGCC-TGC  893
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GTTTCTCTGTGTAGCCCTGGCTGGGCCATGAACTCAGAGATCTGCCTTGC  898

seq1  CCTGTCCCAAGTGCTGAGAT-GAAAGGC-ATGCA-CCATCATA--CCTGG  938
      |||||||||||||||||||| ||||||| ||||| ||||||||  | |||
seq2  CCTGTCCCAAGTGCTGAGATGGAAAGGCAATGCACCCATCATAACCTTGG  948

seq1  T-GCTTCAGTTTAAC-TTCTAACTCCAGGCCAACCGACTCAAAAACCCAC  986
      | ||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  TGGCTTCAGTTTAACTTTCTAACTCCAGGCCCACCGACTCAAAAACCCAC  998

seq1  ACTGAATAATTCATTAGGGA-GTATAAACAGTA  1018
       ||  || |||||||| ||| || |||||||||
seq2  -CTTGATTATTCATTATGGAGGTTTAAACAGTA  1030

seq1: chr7_117563645_117564561
seq2: B6Ng01-178F14.g_65_974 (reverse)

seq1  GAATTTTGGTTTCTTAAAAAACCCAGTTATGTTATGTGAATAGGTTTTTG  50
      ||||||  ||||| |||||||||||| |||| || ||||||| |||||||
seq2  GAATTT--GTTTC-TAAAAAACCCAGCTATG-TAAGTGAATA-GTTTTTG  45

seq1  TTTTAGTCCCAGATGTGGGATAAGAGGCCACCTAACAGCAGGTGTCATGA  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCCCAGATG-GGGATAAGAGGCCACCTAACAGCAGGTGTCATGA  94

seq1  TTTGCTTCATGCACAGCCAGGCCCTGAGAGCCTGTGGAGGCTGCTGCCCC  150
      ||||||||||||||||||||||||||||||||||| ||| ||||||||||
seq2  TTTGCTTCATGCACAGCCAGGCCCTGAGAGCCTGT-GAGACTGCTGCCCC  143

seq1  CGTGCTGCTCCTGGTCGTTGTTATTGTGGTTTGATGAGAAGAAATTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTGCTCCTGGTCGTTGTTATTGTGGTTTGATGAGAAGAAATTGAGG  193

seq1  TATTCTGATGACGAAGATTGGACTTGCCTCAA-GGGACTCAACATCCTAA  249
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TATTCTGATGACGAAGATTGGAC-TGCCTCAAGGGGACTCAACATCCTAA  242

seq1  TCAGTAGGAAGTAGTCCAAAGAGATGTATGTTCCCTTTCCCTCTAACCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGGAAGTAGTCCAAAGAGATGTATGTTCCCTTTCCCTCTAACCTT  292

seq1  CTTTCTCTCCTACCTAGTGTTGAAGGTTTGATTAGGGTGTAATAAAACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCTACCTAGTGTTGAAGGTTTGATTAGGGTGTAATAAAACAT  342

seq1  TAAAACCCAATAAAATAGCCAAAAACTACATTAACAGACATAAGTATAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCCAATAAAATAGCCAAAAACTACATTAACAGACATAAGTATAAA  392

seq1  ATTTGGTAATATACGACTATGGGCCTTTAATATATTGCTCATATTATAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAATATACGACTATGGGCCTTTAATATATTGCTCATATTATAAA  442

seq1  ATCAGTAAAGTAACAAAGTATTTGTCACTAGAAAACAAGGAAAGAACAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAAAGTAACAAAGTATTTGTCACTAGAAAACAAGGAAAGAACAAA  492

seq1  GAAGTGAGGATTTACATCAGCTAAGGAGCAAGTGACTCCATGGATTTCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGATTTACATCAGCTAAGGAGCAAGTGACTCCATGGATTTCAG  542

seq1  CTCTTTTTTAGCCATAGCAGCCTCAAGACATTGATAGTTCAGTAATTAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTTAGCCATAGCAGCCTCAAGACATTGATAGTTCAGTAATTAAT  592

seq1  ATATCTTTTGGGGAAAAAAGGTATTTGCAAAATGGGAATAATCTAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTGGGGAAAAAAGGTATTTGCAAAATGGGAATAATCTAAAATC  642

seq1  ACTCAAGATTACCTGTAGAGTACAGTTCATCATCCTTATTATGTAGTCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGATTACCTGTAGAGTACAGTTCATCATCCTTATTATGTAGTCAA  692

seq1  ACTGTTGATGGTCCAGTATTGCCCGGTTCTGCTGAACGTGCAAGCCCAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGATGGTCCAGTATTGCCCGGTTCTGCTGAACGTGCAAGCCCAGT  742

seq1  TCATCAGTGAGACACTGTCTTGCTGCTTTTCCTTTAAGGGCCCTCAAGGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGTGAGACACTGTCTTGCTGCTTTTCCTTTAAGGGCCCTCAAGGC  792

seq1  AGCAGGAAGGGTCTGAGAACAAGAGAATTCCATGTGACCAAAAGAACCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAGGGTCTGAGAACAAGAGAATTCCATGTGACCAAAAGAACCTT  842

seq1  CAAGCAACCACACTGAAAATTCAAATATGTCCTGTCAAGTATTTAACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAACCACACTGAAAATTCAAATATGTCCTGTCAAGTATTTAACAAA  892

seq1  GTCACCAGAATTGAATTC  917
      ||||||||||||||||||
seq2  GTCACCAGAATTGAATTC  910