BAC Information

Click to search

BAC

Clone NameB6Ng01-178I07
Chromosome7 (Build37)
Map Location 72,452,964 - 72,454,052
singlet/doubletsinglet
Overlap geneTjp1
Upstream geneBB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneGm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I07.b
ACCGA005484
length1,070
definitionB6Ng01-178I07.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattcccagcacccaccaggcagctcacaactgtctataactgc
agtttcaggggacccaacatcttcacacagacaaagcaccagtgcacata
aaataaaattttaaaaatatttatgtctaaatttgcctgtgaatcagata
aaaagttgttgggtttttggctttttgttattgttgttggtttttgtttt
tttgtctgtttttgagacagggcctcactgtatattgctggctgtcctgg
aacttaatgtgtagaacaggctgtcttcaaactcacagagatctgcctgc
ctctgcctcccaagtgctaggatcactaccaggcatagcttgaaaagcat
ttttgattttatgttaattggattttttttaagagtgaaaatttagttat
ttgtgttacataacgttccaatggggtctagaacactgcctggaacccgg
catttattgatttgatggagctcactcagtacagggtacagtgtcatcca
cccactgctagtcggcaggtctgggaggatcctgtgctagcagtggttct
cgcagggaagctttgccattgaatgaagtagtgtctgtctgtctctttta
ccattttgctttctgagaactaaatgcaggagagagatgggtggcaggca
gttgtttgttgttcatggtgagcgtgttgtgtgtggcagctttacaaata
agcatcttcccaccgcaagatttagcttacgactggagggcttgctagaa
aagaaaagaacgccattgatatggccatgctcgaaaggtccacatgtttt
catttgccagtttgtctttataaggggtcagaatacctgccagtcaagga
gacgtgtggcccttctcctgtctttacttatgccatttcttttgcccacc
ttttcttttctaaatggggctttattattcatgatttgtgatattatttg
ataatgcttattgcttacttcgttactttctgtttgtttgttgtattcat
ggcaggttctctgtgtagtccatctgggttatgaatgctgcctttgctgg
atttaaagcacaaccgccac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72452964_72454052
seq2: B6Ng01-178I07.b_40_1109 (reverse)

seq1  GTGGCGGTTTGTGCCTTTAATCCCAGCAAAGGCAGGCATATCATAAACCC  50
      ||||||| ||||| ||||||  |||||||||||| |||| |||| |||||
seq2  GTGGCGG-TTGTG-CTTTAAATCCAGCAAAGGCA-GCAT-TCAT-AACCC  45

seq1  AGACTGGACTACACAGAGAAACCCTGCCATGAATAACAAAACAAAACAAA  100
      ||| ||||||||||||||||  ||||||||||||   | ||||||   ||
seq2  AGA-TGGACTACACAGAGAA--CCTGCCATGAAT---ACAACAAA--CAA  87

seq1  ACAGAAAGTAACGAAGTAAGACAATAAGCAATTATCAAATAATAATCAAC  150
      |||||||||||||||||||| |||||||| ||||||||||||| ||| ||
seq2  ACAGAAAGTAACGAAGTAAG-CAATAAGC-ATTATCAAATAAT-ATC-AC  133

seq1  AAATCATGAATAAATAAAGCCCAATTTAGAAAAAGAAAAGGTTGGGCAAA  200
      ||||||||||| |||||||||| |||||| ||||||||||| ||||||||
seq2  AAATCATGAAT-AATAAAGCCCCATTTAG-AAAAGAAAAGG-TGGGCAAA  180

seq1  AGAAATGGCATAAGTAAAGACAGGAGAAGGGCCACACGTCT-CTTGACTG  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAAATGGCATAAGTAAAGACAGGAGAAGGGCCACACGTCTCCTTGACTG  230

seq1  GCAGGTATTCTGACCCCTTATAAAGACAAACTGGCAAATGAAAACATGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTATTCTGACCCCTTATAAAGACAAACTGGCAAATGAAAACATGTG  280

seq1  GACCTTTCGAGCATGGCCATATCAATGGCGTTCTTTTCTTTTCTAGCAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTCGAGCATGGCCATATCAATGGCGTTCTTTTCTTTTCTAGCAAG  330

seq1  CCCTCCAGTCGTAAGCTAAATCTTGCGGTGGGAAGATGCTTATTTGTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGTCGTAAGCTAAATCTTGCGGTGGGAAGATGCTTATTTGTAAA  380

seq1  GCTGCCACACACAACACGCTCACCATGAACAACAAACAACTGCCTGCCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACACACAACACGCTCACCATGAACAACAAACAACTGCCTGCCAC  430

seq1  CCATCTCTCTCCTGCATTTAGTTCTCAGAAAGCAAAATGGTAAAAGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCTCCTGCATTTAGTTCTCAGAAAGCAAAATGGTAAAAGAGAC  480

seq1  AGACAGACACTACTTCATTCAATGGCAAAGCTTCCCTGCGAGAACCACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACACTACTTCATTCAATGGCAAAGCTTCCCTGCGAGAACCACTG  530

seq1  CTAGCACAGGATCCTCCCAGACCTGCCGACTAGCAGTGGGTGGATGACAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACAGGATCCTCCCAGACCTGCCGACTAGCAGTGGGTGGATGACAC  580

seq1  TGTACCCTGTACTGAGTGAGCTCCATCAAATCAATAAATGCCGGGTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTGTACTGAGTGAGCTCCATCAAATCAATAAATGCCGGGTTCCA  630

seq1  GGCAGTGTTCTAGACCCCATTGGAACGTTATGTAACACAAATAACTAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTTCTAGACCCCATTGGAACGTTATGTAACACAAATAACTAAAT  680

seq1  TTTCACTCTTAAAAAAAATCCAATTAACATAAAATCAAAAATGCTTTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTTAAAAAAAATCCAATTAACATAAAATCAAAAATGCTTTTCA  730

seq1  AGCTATGCCTGGTAGTGATCCTAGCACTTGGGAGGCAGAGGCAGGCAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGCCTGGTAGTGATCCTAGCACTTGGGAGGCAGAGGCAGGCAGAT  780

seq1  CTCTGTGAGTTTGAAGACAGCCTGTTCTACACATTAAGTTCCAGGACAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGTTTGAAGACAGCCTGTTCTACACATTAAGTTCCAGGACAGC  830

seq1  CAGCAATATACAGTGAGGCCCTGTCTCAAAAACAGACAAAAAAACAAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATATACAGTGAGGCCCTGTCTCAAAAACAGACAAAAAAACAAAAA  880

seq1  CCAACAACAATAACAAAAAGCCAAAAACCCAACAACTTTTTATCTGATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAACAATAACAAAAAGCCAAAAACCCAACAACTTTTTATCTGATTC  930

seq1  ACAGGCAAATTTAGACATAAATATTTTTAAAATTTTATTTTATGTGCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAATTTAGACATAAATATTTTTAAAATTTTATTTTATGTGCACT  980

seq1  GGTGCTTTGTCTGTGTGAAGATGTTGGGTCCCCTGAAACTGCAGTTATAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTTGTCTGTGTGAAGATGTTGGGTCCCCTGAAACTGCAGTTATAG  1030

seq1  ACAGTTGTGAGCTGCCTGGTGGGTGCTGGGAATTGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTGAGCTGCCTGGTGGGTGCTGGGAATTGAATTC  1070