BAC Information

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BAC

Clone NameB6Ng01-178I17
Chromosome7 (Build37)
Map Location 11,328,789 - 11,329,217
singlet/doubletsinglet
Overlap geneLOC333184
Upstream geneLOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b
Downstream geneV1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178I17.bB6Ng01-178I17.g
ACCGA005503GA005504
length4911,171
definitionB6Ng01-178I17.b B6Ng01-178I17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaaaagatacatttaaattgagatgaaatagttggttccagt
ctcaaagaaatactatactaagaagtgcaacttcatagtgagttaaaaca
aatcttggttccaaagttaacaggaagtagtcatgaatgattatggccct
ctcttatacatttatcatcaacaagggctaggattgggatggggggcact
gaggtccatattttagaccccaaagcaaggttctctcagcatccctacct
ggcatatcctgagccctaccttgaacattctagcccaggggatgggttat
ccttccaccagtatgatccaaacatttttggtctctgtctccctgcttct
tctcctcttctctctcagctactttgtgccattttctctctctctctctc
tctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtg
cgtgggatgaagcctagctaatcatggcggattatcatttt
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggcgaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagtaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgcccggggcccagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
aatggaggagctagagaaagtagccaggagctaaagggatctgcaaccct
atagtgacacatatgagctaaccagtacccgagctctgactctagctgca
tatatatcaaagatgctagtcgcatcactgtaaagagaagtcaattgtac
tgcaaacttatatggccagtcggaatcaggcatatggaatgctgtccaag
gggaatggtgctccatctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11328789_11329217
seq2: B6Ng01-178I17.b_40_468

seq1  GAATTCTTCAAAAGATACATTTAAATTGAGATGAAATAGTTGGTTCCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAAAGATACATTTAAATTGAGATGAAATAGTTGGTTCCAGT  50

seq1  CTCAAAGAAATACTATACTAAGAAGTGCAACTTCATAGTGAGTTAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGAAATACTATACTAAGAAGTGCAACTTCATAGTGAGTTAAAACA  100

seq1  AATCTTGGTTCCAAAGTTAACAGGAAGTAGTCATGAATGATTATGGCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTGGTTCCAAAGTTAACAGGAAGTAGTCATGAATGATTATGGCCCT  150

seq1  CTCTTATACATTTATCATCAACAAGGGCTAGGATTGGGATGGGGGGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATACATTTATCATCAACAAGGGCTAGGATTGGGATGGGGGGCACT  200

seq1  GAGGTCCATATTTTAGACCCCAAAGCAAGGTTCTCTCAGCATCCCTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCATATTTTAGACCCCAAAGCAAGGTTCTCTCAGCATCCCTACCT  250

seq1  GGCATATCCTGAGCCCTACCTTGAACATTCTAGCCCAGGGGATGGGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATCCTGAGCCCTACCTTGAACATTCTAGCCCAGGGGATGGGTTAT  300

seq1  CCTTCCACCAGTATGATCCAAACATTTTTGGTCTCTGTCTCCCTGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACCAGTATGATCCAAACATTTTTGGTCTCTGTCTCCCTGCTTCT  350

seq1  TCTCCTCTTCTCTCTCAGCTACTTTGTGCCATTTTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTTCTCTCTCAGCTACTTTGTGCCATTTTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCT  429
      |||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCT  429