BAC Information

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BAC

Clone NameB6Ng01-179H06
Chromosome7 (Build37)
Map Location 12,781,069 - 12,781,917
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3
Downstream geneLOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179H06.bB6Ng01-179H06.g
ACCGA006168GA006169
length1,0361,157
definitionB6Ng01-179H06.b B6Ng01-179H06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaatagtcttagtcatctgtgaatactgtgacctacaatatt
gactgtcctattaagtaaaatactctacttgttacattggtaacacaact
attattacactaagcagctactttctatttggatttggtgcttgatttat
agtaacagatttcaactaatgacttgtaaagactggaaaacacttctttc
caatggtcttagggattgagttactgctccatagaaatattagagttgtg
gcaacaaaaataaatttatgagtgccggttcctaagaccagatggaatat
gtgttcacaaatgtttgtgacccaaagactgagaaccacagctcttgaga
acacctagtgctgcaaattgggccaagcattcatagttgggaaactcata
ggcaccataaatgccattattttcataaatggatatagtttcaaactact
ccaaattttgtacctacagttatcaattaatgcaacactcagaacttata
agagaagtttctgtgtgctatgaaggtagttaccacactgacaaaattgc
aaagaaagtgtgactctgtattgcccaatcatgcatgggatatctatgtc
attcccttccctaaagactcaggtaacaaaatggtaaataaaatggagat
ttttcagagagccagatatgagagaggatcagacaaaaactgtatctatt
ggatatatcaggactactgcactcataaactcacatctgttggtgcctgc
ataaacacacacacacacacacacacacacacacacacacacacacacta
ttatttaggccagtcaactttctagcatgaagcagtgggttcatgacact
cccagccctaattaaggagtttattgacaatttcatgacttctgggcatg
gagaggcaagtgttttcataaaatgttttgggccctaggaggtcagccaa
agtacttgaataacccttacacaaccgttgaatataatgtgtagtagaac
tttgtgatgggttatagaaaaataaaaatggattga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatt
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggccgttcctca
gaaaattggacttagttctaccagaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggattggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggtatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagcgtggacactatgcctctccttagacgtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacagcatttcatacactagcaagattttgtcgaac
gaacccagatgtagctgtctcttgtgaagactatgccggggccttagcaa
acacagaagttggatgctcacagtcagctaatggatgggatcccagggct
cccattgaggagctagagaaagtaccaaggagctaaagggatcctgcaac
tctattagggtggaacaacataatgaactaccagtacccggagctattga
actctagctgcatattgtaattcaaaagattgctagtcggcaatcactgg
aaagagagccatttgaacatgcaaactttatagcccgtacaaggtaacgc
aggatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12781069_12781917
seq2: B6Ng01-179H06.b_43_894

seq1  GAATTCATTAATAGTCTTAGTCATCTGTGAATACTGTGACCTACAATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAATAGTCTTAGTCATCTGTGAATACTGTGACCTACAATATT  50

seq1  GACTGTCCTATTAAGTAAAATACTCTACTTGTTACATTGGTAACACAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCTATTAAGTAAAATACTCTACTTGTTACATTGGTAACACAACT  100

seq1  ATTATTACACTAAGCAGCTACTTTCTATTTGGATTTGGTGCTTGATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACACTAAGCAGCTACTTTCTATTTGGATTTGGTGCTTGATTTAT  150

seq1  AGTAACAGATTTCAACTAATGACTTGTAAAGACTGGAAAACACTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGATTTCAACTAATGACTTGTAAAGACTGGAAAACACTTCTTTC  200

seq1  CAATGGTCTTAGGGATTGAGTTACTGCTCCATAGAAATATTAGAGTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTCTTAGGGATTGAGTTACTGCTCCATAGAAATATTAGAGTTGTG  250

seq1  GCAACAAAAATAAATTTATGAGTGCCGGTTCCTAAGACCAGATGGAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAAAAATAAATTTATGAGTGCCGGTTCCTAAGACCAGATGGAATAT  300

seq1  GTGTTCACAAATGTTTGTGACCCAAAGACTGAGAACCACAGCTCTTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCACAAATGTTTGTGACCCAAAGACTGAGAACCACAGCTCTTGAGA  350

seq1  ACACCTAGTGCTGCAAATTGGGCCAAGCATTCATAGTTGGGAAACTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAGTGCTGCAAATTGGGCCAAGCATTCATAGTTGGGAAACTCATA  400

seq1  GGCACCATAAATGCCATTATTTTCATAAATGGATATAGTTTCAAACTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATAAATGCCATTATTTTCATAAATGGATATAGTTTCAAACTACT  450

seq1  CCAAATTTTGTACCTACAGTTATCAATTAATGCAACACTCAGAACTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTTTGTACCTACAGTTATCAATTAATGCAACACTCAGAACTTATA  500

seq1  AGAGAAGTTTCTGTGTGCTATGAAGGTAGTTACCACACTGACAAAATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTTCTGTGTGCTATGAAGGTAGTTACCACACTGACAAAATTGC  550

seq1  AAAGAAAGTGTGACTCTGTATTGCCCAATCATGCATGGGATATCTATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGTGACTCTGTATTGCCCAATCATGCATGGGATATCTATGTC  600

seq1  ATTCCCTTCCCTAAAGACTCAGGTAACAAAATGGTAAATAAAATGGAGA-  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTCCCTTCCCTAAAGACTCAGGTAACAAAATGGTAAATAAAATGGAGAT  650

seq1  TTTTCAGAGAGCCAGATATGAGAGAGGATCAGACAAAAACTGTATCTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGAGCCAGATATGAGAGAGGATCAGACAAAAACTGTATCTATT  700

seq1  GGATATATCAGGACTACTGCACTCATAAACTCACATCTGTTGGTGCCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATCAGGACTACTGCACTCATAAACTCACATCTGTTGGTGCCTGC  750

seq1  ATAAACACACACACACACACACACACACACACACACACACACACACACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACACACACACACACACACACACACACACACACACACACACACTA  800

seq1  TTA-TTAGGCCAGTCAACTTTCTAGCATGAAGCAGT-GGTTCATGACACT  847
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATTTAGGCCAGTCAACTTTCTAGCATGAAGCAGTGGGTTCATGACACT  850

seq1  CC  849
      ||
seq2  CC  852