BAC Information

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BAC

Clone NameB6Ng01-180E02
Chromosome7 (Build37)
Map Location 20,225,514 - 20,345,295
singlet/doubletdoublet
Overlap geneClptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam
Upstream genePsg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb
Downstream geneCblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180E02.bB6Ng01-180E02.g
ACCGA006743GA006744
length1,1871,091
definitionB6Ng01-180E02.b B6Ng01-180E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,225,514 - 20,226,697)(20,344,198 - 20,345,295)
sequence
gaattctcccaccaaggagcttggaggtatggcctataatcatctcccca
ggtgctagggatgtggctcagtggtagaacccctgcctagaatcccccag
tgaggggctgggggcgtggctcagtggtagagcccatgcctagaatcccc
cagtgaggggctgggggcgtggctcagtggtgtagcccctgcctagaatc
ccccagtgaggggctaggggcgtggctcagtggtagagcccctgcctaga
atccctcagtgaggagctgagggtgtggctcagtggtagaacccctgcct
agaatcccccagtgaggggctgggggtgtggctcagtggtaggacacctg
tctggaatgtccctgtaagaggcttgagggcatagatgacagcacagtct
acagtgtgaaaagccctaggttccaccaagaggcaaacaaaaaccagaag
gcctgtgctgctgagctgccccattccatccccacaagggagcagggagc
atagagctctgggctaggatcacatagctcttgtctcccacaagctaagg
gatgttggtgtattaatgccacttcctggcacctcagtaactatcatgga
gaatgaggctaaagcctacacttcttcatgggtcaaagcctacagttcct
acaacattaacatcattccattttttcttgatgaactatttggaaactag
tcccgcttgtcccgatggagtaacaagcacctgaagttgggtatctcaga
gaataaactcctgggacatcctccaagaagggaagaggctgtcaacaagc
aacagacagggctgatgaaaacgggatacagacatggacacacatatttc
acaccacccacacagtagcttacaaccattcatagctccagtttcagaga
atctgatgacccctgccatcaccagaaatgtacatagtacacatacatat
atgcaggtataatatcacacacataaaatttagtagatagattgactgat
tcattcctaatacgaaactgctctagtcctatgggagcagagaagccttg
tctggaagaccagcttctaaagcttgctgcacccgtctacggagttgcag
atgctgtaccactgggccattaggcaatgggtgtgaatacagaaattccc
tgaccttgttcccccaaccaatgttaaaacaccatac
gaattcactctgtagaccatgctggcctcaaaatcagaaatctacctggc
tctgcctctgcctctgcctctgcctcccaagtgctgggattaaaggcatg
tgccaccactgcccagctctaaatatttttcttgtttgtgtgtgcatgtg
cggtataagtgtatatgcattgtgtatacatgcctgaggccagaagttga
ctctgggtgtctttctctattcctctccatttttttttactggggaggaa
taggtgttctgagacagggatttcactgtgtagccccatctggtctggaa
ttcactatgtagatcagactggacttaagcccacagagatgcagttgcct
ctgcttcacgagggctgggattcaaggtgtatgctgctgtgcacagctgt
atttttttttaatgtttattcattttggggggcagtttggtggtcagaga
acaacctgcgggagtcagttctcttcctccaatacatcagttacaaggac
ggaactcaggctgtctggcgtggcggtgtgctcttttacctgctgagcca
tcttgccaggcccctccaccttgtttgagacccggagctcagtgattagg
tttatggctgttcagagaagtccaggaatcctcctgtctccccctccacc
accccagtgccggggttagaaatgctcactcctacagccatctgccatgt
gggtgctgaggatcgaactcaggtcctcactcttgtatagcaaacacttt
atccgccgaacctctccccggtccctcctctctgttttctcctctttgcc
ctcctcccgtgtctcccactcactgtgctgcgcttccctgtcacccacag
gagcaccagagttaaaaccgaatgagataatgcccaaatcagggaatagc
tggacagaaggcgatgaagtcatgctgacctgctccgcccggggcttccc
agagcccaaactcacctggagtcagcgaggcgatactgtaagggctttcc
ttgccaccctgagcccacccaagttccacagggaaccctgaaccctcacg
atcaagctcatgtccccaacactcaccctcagctcaccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20225514_20226697
seq2: B6Ng01-180E02.b_34_1220

seq1  GAATTCTCCCACCAAGGAGCTTGGAGGTATGGCCTATAATCATCTCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCACCAAGGAGCTTGGAGGTATGGCCTATAATCATCTCCCCA  50

seq1  GGTGCTAGGGATGTGGCTCAGTGGTAGAACCCCTGCCTAGAATCCCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTAGGGATGTGGCTCAGTGGTAGAACCCCTGCCTAGAATCCCCCAG  100

seq1  TGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCATGCCTAGAATCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCATGCCTAGAATCCCC  150

seq1  CAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTGTAGCCCCTGCCTAGAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGGCTGGGGGCGTGGCTCAGTGGTGTAGCCCCTGCCTAGAATC  200

seq1  CCCCAGTGAGGGGCTAGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGAGGGGCTAGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGA  250

seq1  ATCCCTCAGTGAGGAGCTGAGGGTGTGGCTCAGTGGTAGAACCCCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAGTGAGGAGCTGAGGGTGTGGCTCAGTGGTAGAACCCCTGCCT  300

seq1  AGAATCCCCCAGTGAGGGGCTGGGGGTGTGGCTCAGTGGTAGGACACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCCCAGTGAGGGGCTGGGGGTGTGGCTCAGTGGTAGGACACCTG  350

seq1  TCTGGAATGTCCCTGTAAGAGGCTTGAGGGCATAGATGACAGCACAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGTCCCTGTAAGAGGCTTGAGGGCATAGATGACAGCACAGTCT  400

seq1  ACAGTGTGAAAAGCCCTAGGTTCCACCAAGAGGCAAACAAAAACCAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTGAAAAGCCCTAGGTTCCACCAAGAGGCAAACAAAAACCAGAAG  450

seq1  GCCTGTGCTGCTGAGCTGCCCCATTCCATCCCCACAAGGGAGCAGGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCTGCTGAGCTGCCCCATTCCATCCCCACAAGGGAGCAGGGAGC  500

seq1  ATAGAGCTCTGGGCTAGGATCACATAGCTCTTGTCTCCCACAAGCTAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCTCTGGGCTAGGATCACATAGCTCTTGTCTCCCACAAGCTAAGG  550

seq1  GATGTTGGTGTATTAATGCCACTTCCTGGCACCTCAGTAACTATCATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGTGTATTAATGCCACTTCCTGGCACCTCAGTAACTATCATGGA  600

seq1  GAATGAGGCTAAAGCCTACACTTCTTCATGGGTCAAAGCCTACAGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGGCTAAAGCCTACACTTCTTCATGGGTCAAAGCCTACAGTTCCT  650

seq1  ACAACATTAACATCATTCCATTTTTTCTTGATGAACTATTTGGAAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTAACATCATTCCATTTTTTCTTGATGAACTATTTGGAAACTAG  700

seq1  TCCCGCTTGTCCAGCTGGAGTAACAAGCACCTGAAGTTGGGTATCTCAGA  750
      |||||||||||| | |||||||||||||||||||||||||||||||||||
seq2  TCCCGCTTGTCCCGATGGAGTAACAAGCACCTGAAGTTGGGTATCTCAGA  750

seq1  GAATAAACTCCTGGGACATCCTCCAAGAAGGGAAGAGGCTGTCAACAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAACTCCTGGGACATCCTCCAAGAAGGGAAGAGGCTGTCAACAAGC  800

seq1  AACAGACAGGGCTGATGAAAACGGGATACAGACATGGACACACATA-TTC  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACAGACAGGGCTGATGAAAACGGGATACAGACATGGACACACATATTTC  850

seq1  ACACCACCCACACAGTAGCTTACAACCATTCATAGCTCCAGTTTCAGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCCACACAGTAGCTTACAACCATTCATAGCTCCAGTTTCAGAGA  900

seq1  ATCTGATGACCCCTGCCATCACCAGAAATGTACATAGTACACATACATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGACCCCTGCCATCACCAGAAATGTACATAGTACACATACATAT  950

seq1  ATGCAGGTATAATATCACACACATAAAATTTAGTAGATAGATTGACTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGTATAATATCACACACATAAAATTTAGTAGATAGATTGACTGAT  1000

seq1  TCATT-CTAATACGAAACTGCTCTAGTCCTATGGGAGCAGAGAAGCCCTG  1048
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCATTCCTAATACGAAACTGCTCTAGTCCTATGGGAGCAGAGAAGCCTTG  1050

seq1  TTCTGGAAGACCAAGCTTCTAAAGC-TGCTGCACCCGTCTAACGGAGTTG  1097
       ||||||||||| |||||||||||| |||||||||||||| |||||||||
seq2  -TCTGGAAGACC-AGCTTCTAAAGCTTGCTGCACCCGTCT-ACGGAGTTG  1097

seq1  CAGATGCTGGTACCACTGGGC--ATAAGCTATGGGTGTG-ATACAG-AAT  1143
      |||||||| ||||||||||||   || || ||||||||| |||||| |||
seq2  CAGATGCT-GTACCACTGGGCCATTAGGCAATGGGTGTGAATACAGAAAT  1146

seq1  CCACTGACACTTGTCTCCCCACACAATG-TAAAACACCATAC  1184
       | ||||| |||||  |||||  ||||| |||||||||||||
seq2  TCCCTGAC-CTTGTTCCCCCAACCAATGTTAAAACACCATAC  1187

seq1: chr7_20344198_20345295
seq2: B6Ng01-180E02.g_63_1153 (reverse)

seq1  GGGGGTGAAGGCTGAGGTGGAGTGTTGGGGGACATGAAGCTTGGATCGTT  50
      ||||||||  |||||||  ||||||| ||||||||| ||||| ||||| |
seq2  GGGGGTGA--GCTGAGGGTGAGTGTT-GGGGACATG-AGCTT-GATCG-T  44

seq1  GAGGG-TCAGGGTTCCCTGTGGAACTTGGGGTGGGCTCAGGGTGGCAAGG  99
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAGGGTTCAGGGTTCCCTGTGGAACTT-GGGTGGGCTCAGGGTGGCAAGG  93

seq1  AAAGCCCCTTACAGTATCGCCTCGCTGACTCCAGGTGAGTTTGGGCTCTG  149
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAG-CCCTTACAGTATCGCCTCGCTGACTCCAGGTGAGTTTGGGCTCTG  142

seq1  GGAAGCCCCGGGCGGAGCAGGTCAGCATGACTTCATCGCCTTCTGTCCAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCCGGGCGGAGCAGGTCAGCATGACTTCATCGCCTTCTGTCCAG  192

seq1  CTATTCCCTGATTTGGGCATTATCTCATTCGGTTTTAACTCTGGTGCTCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCCTGATTTGGGCATTATCTCATTCGGTTTTAACTCTGGTGCTCC  242

seq1  TGTGGGTGACAGGGAAGCGCAGCACAGTGAGTGGGAGACACGGGAGGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGACAGGGAAGCGCAGCACAGTGAGTGGGAGACACGGGAGGAGG  292

seq1  GCAAAGAGGAGAAAACAGAGAGGAGGGACCGGGGAGAGGTTCGGCGGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGAGAAAACAGAGAGGAGGGACCGGGGAGAGGTTCGGCGGATA  342

seq1  AAGTGTTTGCTATACAAGAGTGAGGACCTGAGTTCGATCCTCAGCACCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTTGCTATACAAGAGTGAGGACCTGAGTTCGATCCTCAGCACCCA  392

seq1  CATGGCAGATGGCTGTAGGAGTGAGCATTTCTAACCCCGGCACTGGGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGATGGCTGTAGGAGTGAGCATTTCTAACCCCGGCACTGGGGTG  442

seq1  GTGGAGGGGGAGACAGGAGGATTCCTGGACTTCTCTGAACAGCCATAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGGGGAGACAGGAGGATTCCTGGACTTCTCTGAACAGCCATAAAC  492

seq1  CTAATCACTGAGCTCCGGGTCTCAAACAAGGTGGAGGGGCCTGGCAAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCACTGAGCTCCGGGTCTCAAACAAGGTGGAGGGGCCTGGCAAGAT  542

seq1  GGCTCAGCAGGTAAAAGAGCACACCGCCACGCCAGACAGCCTGAGTTCCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAGGTAAAAGAGCACACCGCCACGCCAGACAGCCTGAGTTCCG  592

seq1  TCCTTGTAACTGATGTATTGGAGGAAGAGAACTGACTCCCGCAGGTTGTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAACTGATGTATTGGAGGAAGAGAACTGACTCCCGCAGGTTGTT  642

seq1  CTCTGACCACCAAACTGCCCCCCAAAATGAATAAACATTAAAAAAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCACCAAACTGCCCCCCAAAATGAATAAACATTAAAAAAAAATA  692

seq1  CAGCTGTGCACAGCAGCATACACCTTGAATCCCAGCCCTCGTGAAGCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGCACAGCAGCATACACCTTGAATCCCAGCCCTCGTGAAGCAGA  742

seq1  GGCAACTGCATCTCTGTGGGCTTAAGTCCAGTCTGATCTACATAGTGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTGCATCTCTGTGGGCTTAAGTCCAGTCTGATCTACATAGTGAAT  792

seq1  TCCAGACCAGATGGGGCTACACAGTGAAATCCCTGTCTCAGAACACCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACCAGATGGGGCTACACAGTGAAATCCCTGTCTCAGAACACCTAT  842

seq1  TCCTCCCCAGTAAAAAAAAATGGAGAGGAATAGAGAAAGACACCCAGAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCCAGTAAAAAAAAATGGAGAGGAATAGAGAAAGACACCCAGAGT  892

seq1  CAACTTCTGGCCTCAGGCATGTATACACAATGCATATACACTTATACCGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGCCTCAGGCATGTATACACAATGCATATACACTTATACCGC  942

seq1  ACATGCACACACAAACAAGAAAAATATTTAGAGCTGGGCAGTGGTGGCAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACACACAAACAAGAAAAATATTTAGAGCTGGGCAGTGGTGGCAC  992

seq1  ATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGAGGCAGAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGAGGCAGAG  1042

seq1  CCAGGTAGATTTCTGATTTTGAGGCCAGCATGGTCTACAGAGTGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGATTTCTGATTTTGAGGCCAGCATGGTCTACAGAGTGAATTC  1091