BAC Information

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BAC

Clone NameB6Ng01-180J01
Chromosome7 (Build37)
Map Location 93,260,001 - 93,260,858
singlet/doubletsinglet
Overlap geneLOC100039471
Upstream geneEG620672, Vmn2r-ps68, EG620697, Vmn2r-ps69, LOC330581, LOC100039339, Vmn2r70, Vmn2r-ps72, EG233445, Vmn2r-ps74, EG244114, EG620928, EG546980, LOC666382, LOC637652, LOC637667, EG666418
Downstream geneEG546981, Vmn2r-ps86, Vmn2r76, Olfr310, Olfr309, Olfr308, Olfr307, Olfr306-ps1, Olfr305, Olfr304, Olfr303, Olfr301, Olfr1531-ps1, Olfr300-ps1, Olfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-180J01.bB6Ng01-180J01.g
ACCGA006960GA006961
length1,2231,117
definitionB6Ng01-180J01.b B6Ng01-180J01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaaat
gtcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccacctctcaccagtcagaatggctaagttcaaaaattcaggtgacagc
atatgctggcgaggatgtggagaaagaggatgtgttggtgggattgtatg
cttgtacaaccactctggaaatcagtctggtggttcctcagaaaactggg
catagtactacaggaggatccctcaataccactcatgggtatatatccag
aagatgttccaaccgataagaaggacacatgctccactatattcatagca
gccttatttatcatagccattagctggaaagaacccagatgccactcaac
agaggaatggatacagaaaatatggtacattacacaatggattactactc
agctattaaaaagaatgaatttatgaaattcctaggcaaatggatggacc
tggagggcatcattctgagtgaggtaacccaatcacaaagactctgacaa
tatgtactcactgataaatggatattagcccagaaacttagaatacccaa
gatacaagatataatttactaaatgctaaatgttcaagaataacaaatac
taaagtgtggacactttgccctttcttagaattggaaacaaaacacccat
ggaaggagttacagagacaaattttggagctgagatgaaaggatggacta
tcttgagactgccatatcgggggatccatcccataatcaacttccaaaag
ctgacaccattgcatacactagtaagattttgctgaaaggacccagatat
gtctgtctcttgtgagactatgcccagggcttggcaaacacagaagtggg
atgctcacagtcagctattgggatggatcacagggcccccaatggatgag
ctagggaaagtacccagggagctgaagggatttgcatcctatagggtaga
aacaccaatatgaactaaacaggtacccacttttccccccttccccctgg
cggagctcgtttatctagcctgcatatgaaatcagaaagatgggcctatt
ccgtcaatccagatgcaaagagaaggcccaattggctcatgcaaacttaa
tattgccctcagtacatgaattgcaaggtctagaagtgggaaatgtggtt
gtcggtgcgcgacactcaacatc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttagaaggagttacagagacaaattttggagctgagatga
aaggacggttgccaattcttaagagttctactgggaatccagagagctgg
gtataaaaccagtagtctgaggacctcttcacaatattccagtctcctgt
gactggggcagtgaaaagaaatgtcagtgctgacccagacatagacatga
tcattaatcacccttcaagggaaggccataataccaaaattcacaatgct
gtgacagccataacaaatgatgatattacataaaaggtttcttgccactt
gtgattaaaacctggtgtgggccaacttgcagacccaactgcttcccacc
tgacattggtaattgctcttgtatttagatgtacaaacctctctgaacag
gccctggttcacacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_93260001_93260858
seq2: B6Ng01-180J01.g_328_1182

seq1  TAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA  50

seq1  GATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC  100

seq1  CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG  150

seq1  AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA  200

seq1  GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT  250

seq1  GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACA  300

seq1  ATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAA  350

seq1  GATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGAC  400

seq1  TGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTT  450

seq1  AGAAGGAGTTACAGAGACAAATTTTGGAGCTGAGATGAAAGGACGGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGTTACAGAGACAAATTTTGGAGCTGAGATGAAAGGACGGTTGC  500

seq1  CAATTCTTAAGAGTTCTACTGGGAATCCAGAGAGCTGGGTATAAAACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTTAAGAGTTCTACTGGGAATCCAGAGAGCTGGGTATAAAACCAG  550

seq1  TAGTCTGAGGACCTCTTCACAATATTCCAGTCTCCTGTGACTGGGGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGAGGACCTCTTCACAATATTCCAGTCTCCTGTGACTGGGGCAGT  600

seq1  GAAAAGAAATGTCAGTGCTGACCCAGACATAGACATGATCATTAATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAATGTCAGTGCTGACCCAGACATAGACATGATCATTAATCACC  650

seq1  TTTCAAGGGAAGGCCATAATACCCAAATTCACAATGCTGTGACAGCCATA  700
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTCAAGGGAAGGCCATAATACCAAAATTCACAATGCTGTGACAGCCATA  700

seq1  ACAAATGATGATA-TACATAAAAGGGTTCTTGCCACTTGTGATTTAAAAC  749
      ||||||||||||| ||||||||||| |||||||||||||||| |||||||
seq2  ACAAATGATGATATTACATAAAAGGTTTCTTGCCACTTGTGA-TTAAAAC  749

seq1  CTGGTGTGGGCCCAACTGCAGACCCAACTGC-TCCCA-CTGACATTTGGT  797
      |||||||||||| |  ||||||||||||||| ||||| |||||| |||||
seq2  CTGGTGTGGGCCAACTTGCAGACCCAACTGCTTCCCACCTGACA-TTGGT  798

seq1  AATGGTTCTTGTATTTAGGATGTACAAACCCTCCTCCTGACAGGCCCCCT  847
      ||| | ||||||||||| ||||||||||||   |||   |||||  ||||
seq2  AATTGCTCTTGTATTTA-GATGTACAAACC--TCTCTGAACAGG--CCCT  843

seq1  GG-TCACACTTC  858
      || |||||||||
seq2  GGTTCACACTTC  855