BAC Information

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BAC

Clone NameB6Ng01-181D01
Chromosome7 (Build37)
Map Location 3,571,838 - 3,708,766
singlet/doubletdoublet
Overlap geneTfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm, Prkcc, Cacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3
Downstream geneLOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1, Gp6, LOC100041851, Atp6v0c-ps1, Rdh13, Eps8l1, Ppp1r12c, Tnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181D01.bB6Ng01-181D01.g
ACCGA007421GA007422
length1,101846
definitionB6Ng01-181D01.b B6Ng01-181D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,571,838 - 3,572,932)(3,707,927 - 3,708,766)
sequence
gaattcagtgtgtagtcagggtagcctccaaccctggaacctggatatga
tcagaggtgggagcaataaacggtgacctagacaagtgtacatagggaat
ctgtttattggggagagggttagtcaaagggtgggctggccagggtaggg
tagggtagcaatttgtctggctctcgggaaacccaacttgaatccaaggc
ctcatctgcttcaaagccaaagtcttcctcaaccttaatctgaaaagata
cggaacaagatgcgagggatatggagacccaggagacatactacccccaa
gcacactcaccaatcagcctatgggcactggtttcccaggttagacactt
cccacaatcaatcactgacgaccatccctcagctgactttctcttcaagc
actagcctggttttccaactcctctatcctacctgatagcaacccagtgt
tgccagtctgcccagccctccccagacctggatccctcaaagcccagccc
aggattctcaccacgccttggccccagccctcggctcccacctgcactgg
ggccagttctggagtcaatgaagcccccacccgtggcgcccgccgcctct
tccgcccactgggcccctcgccaggggctgggctggtggggtctaaggtt
gcagttgtcctttgggatggggaaagcccctctttctctggaggttcatt
ctcagcattgcctggggtagggacatctgtgccttggctgccatcatcct
ggtaagatgtaacatggtggcggttaaagactcctggattccccatcctc
ccaacctgcttggagaccagagctcacctccaacacaatggtgaactggc
tatctcggtagtcatccccgtaggagtccagcaccctcatgaggaacctg
tgtggatggagatgcaggcactgaaaattcttattcttcttgagggagta
cgtaaagataagtcaggttctccttcaattctaaagtttcgcttgaacta
gaaaggtttagactctgtagccctgagctcccagcctgggaacaagttga
ccccagtctctaacacaatgattagtggaccatccttactgggtttaggt
g
gaattccatgtcatagcacaggaaagagtagaaccttttcctctccaggg
acagcaagggccctggttggatgcttagttaggaaacttcgaccatccct
aacttctgtaacttctgtatctaactccacagccacagagaaccaggatc
acacaacggagaatctcatcaggatggggatggcagtcgtggtcctcatc
gtcctttcgattctagccactgaggcttggcgaagccatagacagaccca
ccatgcagctgggaactactctgaggagagaagaatgcatcttcaatgtt
ctacactctgggaaataaagatgatgacccaaagttgtcaaaaaaaacga
aaaaaagaaaaaaacactgttgtggtattgaggaactgctgtgatagaat
gtctggggagcaaaagtttggggttcatagggaagtggaatttgataatg
aggtgcttcaccaacaagtgaattactgtccctccacgtactcggagcct
ttgtttcctgaaccgacactcttctgaacccagaaagtgagggaataggc
tgtcccacctgcctggaatatctttcacctgtggattgtatttttctgta
tttctttatggggtttattcattcacatttaaaggcctctgtcatcttta
tgaattgtatttaaggacagttccttgtatgtgagtgagtgtgcatatac
gggagggttgggtgtgtgtattagcctactgccattgggtgttctttcag
gcaccttggtggggcaggagcttggtgagacaaaggctttattgatgttc
ctttgtgggcagcagaccttcctggaaagcatgcagtcctttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3571838_3572932
seq2: B6Ng01-181D01.b_45_1145

seq1  GAATTCAGTGTGTAGTCAGGGTAGCCTCCAACCCTGGAACCTGGATATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGTAGTCAGGGTAGCCTCCAACCCTGGAACCTGGATATGA  50

seq1  TCAGAGGTGGGAGCAATAAACGGTGACCTAGACAAGTGTACATAGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGTGGGAGCAATAAACGGTGACCTAGACAAGTGTACATAGGGAAT  100

seq1  CTGTTTATTGGGGAGAGGGTTAGTCAAAGGGTGGGCTGGCCAGGGTAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTATTGGGGAGAGGGTTAGTCAAAGGGTGGGCTGGCCAGGGTAGGG  150

seq1  TAGGGTAGCAATTTGTCTGGCTCTCGGGAAACCCAACTTGAATCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGCAATTTGTCTGGCTCTCGGGAAACCCAACTTGAATCCAAGGC  200

seq1  CTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTGAAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGCTTCAAAGCCAAAGTCTTCCTCAACCTTAATCTGAAAAGATA  250

seq1  CGGAACAAGATGCGAGGGATATGGAGACCCAGGAGACATACTACCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACAAGATGCGAGGGATATGGAGACCCAGGAGACATACTACCCCCAA  300

seq1  GCACACTCACCAATCAGCCTATGGGCACTGGTTTCCCAGGTTAGACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTCACCAATCAGCCTATGGGCACTGGTTTCCCAGGTTAGACACTT  350

seq1  CCCACAATCAATCACTGACGACCATCCCTCAGCTGACTTTCTCTTCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAATCAATCACTGACGACCATCCCTCAGCTGACTTTCTCTTCAAGC  400

seq1  ACTAGCCTGGTTTTCCAACTCCTCTATCCTACCTGATAGCAACCCAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCCTGGTTTTCCAACTCCTCTATCCTACCTGATAGCAACCCAGTGT  450

seq1  TGCCAGTCTGCCCAGCCCTCCCCAGACCTGGATCCCTCAAAGCCCAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCTGCCCAGCCCTCCCCAGACCTGGATCCCTCAAAGCCCAGCCC  500

seq1  AGGATTCTCACCACGCCTTGGCCCCAGCCCTCGGCTCCCACCTGCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTCACCACGCCTTGGCCCCAGCCCTCGGCTCCCACCTGCACTGG  550

seq1  GGCCAGTTCTGGAGTCAATGAAGCCCCCACCCGTGGCGCCCGCCGCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTTCTGGAGTCAATGAAGCCCCCACCCGTGGCGCCCGCCGCCTCT  600

seq1  TCCGCCCACTGGGCCCCTCGCCAGGGGCTGGGCTGGTGGGGTCTAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCCACTGGGCCCCTCGCCAGGGGCTGGGCTGGTGGGGTCTAAGGTT  650

seq1  GCAGTTGTCCTTTGGGATGGGGAAAGCCCCTCTTTCTCTGGAGGTTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGTCCTTTGGGATGGGGAAAGCCCCTCTTTCTCTGGAGGTTCATT  700

seq1  CTCAGCATTGCCTGGGGTAGGGACATCTGTGCCTTGGCTGCCATCATCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATTGCCTGGGGTAGGGACATCTGTGCCTTGGCTGCCATCATCCT  750

seq1  GGTAAGATGTAACATGGTGGCGGTTAAAGACTCCTGGATTCCCCATCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGATGTAACATGGTGGCGGTTAAAGACTCCTGGATTCCCCATCCTC  800

seq1  CCAACCTGCTTGGAGACCAGAGCTCACCTCCAACACAATGGTGAACTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGCTTGGAGACCAGAGCTCACCTCCAACACAATGGTGAACTGGC  850

seq1  TATCTCGGTAGTCATCCCCGTAGGAGTCCAGCACCCTCATGAGGAACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCGGTAGTCATCCCCGTAGGAGTCCAGCACCCTCATGAGGAACCTG  900

seq1  TGTGGATGGAGATGCAGGCACTGAAAA-TCTTA-TCTTC-TGAGGGAGTA  947
      ||||||||||||||||||||||||||| ||||| ||||| ||||||||||
seq2  TGTGGATGGAGATGCAGGCACTGAAAATTCTTATTCTTCTTGAGGGAGTA  950

seq1  CGTAAAAGATAAGTCCAGGTCT-CTTCAA-TCTAAAG-TTCGCTTGAACT  994
      ||| |||||||||||  | ||| |||||| ||||||| ||||||||||||
seq2  CGT-AAAGATAAGTCAGGTTCTCCTTCAATTCTAAAGTTTCGCTTGAACT  999

seq1  AGAAAGGTTTAGACCTCTGTAG-CCTGAGCTCCCAGCCTGGGAACCAGTT  1043
      ||||||||||||| |||||||| |||||||||||||||||||||| ||||
seq2  AGAAAGGTTTAGA-CTCTGTAGCCCTGAGCTCCCAGCCTGGGAACAAGTT  1048

seq1  GACCCCAAGTCTCCTACACAATGATAGGTG--ACATCCTTTACTGGG-TT  1090
      |||||| ||||||  ||||||||||  |||   ||||| |||||||| ||
seq2  GACCCC-AGTCTCTAACACAATGATTAGTGGACCATCC-TTACTGGGTTT  1096

seq1  AGGTG  1095
      |||||
seq2  AGGTG  1101

seq1: chr7_3707927_3708766
seq2: B6Ng01-181D01.g_65_910 (reverse)

seq1  -CCCCAAGGACTGCATGCTTTCCAGG-AGGTCTGCTG-CCAC-AAGGAAC  46
       ||| ||||||||||||||||||||| |||||||||| |||| |||||||
seq2  CCCCAAAGGACTGCATGCTTTCCAGGAAGGTCTGCTGCCCACAAAGGAAC  50

seq1  ATCAACTAAGCCTTTGTCTC-CCAAGCTCCTG-CCCACCAAGGTGCCTGA  94
      |||||  ||||||||||||| ||||||||||| |||||||||||||||||
seq2  ATCAATAAAGCCTTTGTCTCACCAAGCTCCTGCCCCACCAAGGTGCCTGA  100

seq1  AAGAACACCCAATGGCAGTAGGCTAATACACACACCCAACCCTCCCGTAT  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACCCAATGGCAGTAGGCTAATACACACACCCAACCCTCCCGTAT  150

seq1  ATGCACACTCACTCACATACAAGGAACTGTCCTTAAATACAATTCATAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACTCACTCACATACAAGGAACTGTCCTTAAATACAATTCATAAA  200

seq1  GATGACAGAGGCCTTTAAATGTGAATGAATAAACCCCATAAAGAAATACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGAGGCCTTTAAATGTGAATGAATAAACCCCATAAAGAAATACA  250

seq1  GAAAAATACAATCCACAGGTGAAAGATATTCCAGGCAGGTGGGACAGCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACAATCCACAGGTGAAAGATATTCCAGGCAGGTGGGACAGCCT  300

seq1  ATTCCCTCACTTTCTGGGTTCAGAAGAGTGTCGGTTCAGGAAACAAAGGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCACTTTCTGGGTTCAGAAGAGTGTCGGTTCAGGAAACAAAGGC  350

seq1  TCCGAGTACGTGGAGGGACAGTAATTCACTTGTTGGTGAAGCACCTCATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGTACGTGGAGGGACAGTAATTCACTTGTTGGTGAAGCACCTCATT  400

seq1  ATCAAATTCCACTTCCCTATGAACCCCAAACTTTTGCTCCCCAGACATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCCACTTCCCTATGAACCCCAAACTTTTGCTCCCCAGACATTC  450

seq1  TATCACAGCAGTTCCTCAATACCACAACAGTGTTTTTTTCTTTTTTTCGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGCAGTTCCTCAATACCACAACAGTGTTTTTTTCTTTTTTTCGT  500

seq1  TTTTTTTGACAACTTTGGGTCATCATCTTTATTTCCCAGAGTGTAGAACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGACAACTTTGGGTCATCATCTTTATTTCCCAGAGTGTAGAACA  550

seq1  TTGAAGATGCATTCTTCTCTCCTCAGAGTAGTTCCCAGCTGCATGGTGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGCATTCTTCTCTCCTCAGAGTAGTTCCCAGCTGCATGGTGGG  600

seq1  TCTGTCTATGGCTTCGCCAAGCCTCAGTGGCTAGAATCGAAAGGACGATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTATGGCTTCGCCAAGCCTCAGTGGCTAGAATCGAAAGGACGATG  650

seq1  AGGACCACGACTGCCATCCCCATCCTGATGAGATTCTCCGTTGTGTGATC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACGACTGCCATCCCCATCCTGATGAGATTCTCCGTTGTGTGATC  700

seq1  CTGGTTCTCTGTGGCTGTGGAGTTAGATACAGAAGTTACAGAAGTTAGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTCTGTGGCTGTGGAGTTAGATACAGAAGTTACAGAAGTTAGGG  750

seq1  ATGGTCGAAGTTTCCTAACTAAGCATCCAACCAGGGCCCTTGCTGTCCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCGAAGTTTCCTAACTAAGCATCCAACCAGGGCCCTTGCTGTCCCT  800

seq1  GGAGAGGAAAAGGTTCTACTCTTTCCTGTGCTATGACATGGAATTC  840
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAAAAGGTTCTACTCTTTCCTGTGCTATGACATGGAATTC  846