BAC Information

Click to search

BAC

Clone NameB6Ng01-181I12
Chromosome7 (Build37)
Map Location 25,114,508 - 25,278,753
singlet/doubletdoublet
Overlap gene1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4
Upstream geneNlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94
Downstream geneZfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181I12.bB6Ng01-181I12.g
ACCGA007665GA007666
length1,0881,126
definitionB6Ng01-181I12.b B6Ng01-181I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,277,684 - 25,278,753)(25,114,508 - 25,115,628)
sequence
gaattcaacatccattttgggtcctagtgacagagcataagagtaacaga
acccagcacttggaaggcagaggcaggcggatttctgagttcaaggccag
cctggtctacaaagtgagttccaggacagccagggctacacagagaaacc
ctgtcttgaaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaagagtaac
agaactaagttgaaagagcatgagtctttggtggcaatgtggagcagcca
cgccttttaactctggactgcttttatgcggatagtatctaagccaccct
ctgaattttacctcccagagtgacaaacaaagcattccgcccttacctat
gcggtttataggttcagtaggtgccacaaaccacccactccgttgctcag
gccaaaggacagcaagccacccaagcgtccgaccgttccctcagccctca
cacccacccctccagaaccgtctgcatattttacctctaaaatatatctg
aatctgtttggccttgtctgcctcacctccgagcaccctctcctggtatc
gtccctctctcatctggatctctcaagatccagacctgtttgtggatctc
aacttccaagcctgcctctcacacctaggctgacctgtaacacgtgaccc
tcttaacatcacctcctgacagcaggcatgccacctggccctgattatat
ggattcctttctctttttctttttttcccttttctcctcctcttcctcct
cctcctcctcttttgatttttcaagacagggcttctctatttagccctgg
ctgttctggagttaactctgtaaatcaaagctggctttgaactcacagag
atccacctgcatctgcccccctgagcactgggatcaaaagatttgcacca
ccaccaactgggctgcttctttttttaaaacacagttctcaacatgggaa
gccttggctgacctggaacctgataattgtagatccgactaagggctaaa
ggttttgttgccactgtaccttgacctaggtggaacttttaaaacttcag
attcttattttttttcaataatatatgtttacccagtg
gaattcttctgtctctgcctcccaggtatccctggaagcactatggtctg
gggagcactgtgatctcgggagcactatgattataggtgtgcagtaccat
atctggctttatgtgggctctgggaatgcaaacttagtcctcatccttgc
atgaaagccctttccccatgaagccatagtttctttcagccaagagcctc
ctggacgtgttaaatttaatttcagtttaatgtttgaatgtctaacctat
tgtctgcttgcttgttggtagaaacactctctactttctagttggctgat
ttcacagagcccaaagtggctttttcataagaaaccaatgtgtttctcca
tacaatgagatgctttttattctacaagccagtcaaccagcaagatcata
gattctggtactgcccagaggactctgacagtggtagtgaaacagtgctc
tccagctctctttccttcggggatatgcatccttcccacgaacagaagtc
atcctatctgtgtgtgctcagatctgaagcaaagatctggggactgggga
tgaggctgagccggtaaagtgcttgcctgcattcagaaagctgtgagttt
ggttcggagcagatgcatcaagcctgtgagtgcatgcctatgctcccagc
actcaggaggttgagccaggaggtagaagggcatcctaggcaaaacagtg
agttcaaggccagcctaggatacttgagattttgaccccaaaatttaaat
aaacaaacaacaacacaactgcttgaaggaaaggaaggaaacaactgccc
ctcaggaactcaagcgcctgtatgcaaatttattattatcttcactcatg
catattcatcaaagcagcagcttttagggataattttgaacctccagggg
gtatttggcagactacatttttaatgtttttctcactacaatgacaaaaa
agaaaattattgcaggaagacttttaagactcaggcttgctgctggtgct
aacaacaaggccctgcaggaaccagcaagtgctcacattatgtgtgtagg
ggctgagatggaacttggaagggccagcactggctcagcatgcacagcct
taggttcaattctcataccttacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25277684_25278753
seq2: B6Ng01-181I12.b_48_1135 (reverse)

seq1  CACTGGG-ACACATATATTATT-AAAAAAAAT-AGAATCTTGAATTTTAA  47
      ||||||| | |||||||||||| ||||||||| |||||||  | ||||||
seq2  CACTGGGTAAACATATATTATTGAAAAAAAATAAGAATCTGAAGTTTTAA  50

seq1  AAG-TCCACCTA-GTC-AGGTACAGTGGCA--CAAACCTTTAGCCC-TAG  91
      ||| |||||||| ||| |||||||||||||   ||||||||||||| |||
seq2  AAGTTCCACCTAGGTCAAGGTACAGTGGCAACAAAACCTTTAGCCCTTAG  100

seq1  TCGG-TCTAC-ATTATCAGGTTCCAGGTCAGCCAGGGCT--CCATGTTGA  137
      |||| ||||| ||||||||||||||||||||||| ||||  |||||||||
seq2  TCGGATCTACAATTATCAGGTTCCAGGTCAGCCAAGGCTTCCCATGTTGA  150

seq1  G-ACTGTGTTTTAAAAAAAGAAGCAG-CCAGTTGGTGGTGGTGC-AATCT  184
      | |||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  GAACTGTGTTTTAAAAAAAGAAGCAGCCCAGTTGGTGGTGGTGCAAATCT  200

seq1  TTTGATCCCAGTGCTCA-GGGGGCAGATGCAGGTGGATCTCTGTGAGTTC  233
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGATCCCAGTGCTCAGGGGGGCAGATGCAGGTGGATCTCTGTGAGTTC  250

seq1  AAAGCCAGC-TTGATTTACAGAGTTAACTCCAGAACAGCCAGGGCTAAAT  282
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGCTTTGATTTACAGAGTTAACTCCAGAACAGCCAGGGCTAAAT  300

seq1  AGAGAAGCCCTGTCTTGAAAAATCAAAAGAGGAGGAGGAGGAGGAAGAGG  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCCCTGTCTTGAAAAATCAAAAGAGGAGGAGGAGGAGGAAGAGG  350

seq1  AGGAGAAAAGGGAAAAAAAGAAAAAGAGAAAGGAATCCATATAATCAGGG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAGGGAAAAAAAGAAAAAGAGAAAGGAATCCATATAATCAGGG  400

seq1  CCAGGTGGCATGCCTGCTGTCAGGAGGTGATGTTAAGAGGGTCACGTGTT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGCATGCCTGCTGTCAGGAGGTGATGTTAAGAGGGTCACGTGTT  450

seq1  ACAGGTCAGCCTAGGTGTGAGAGGCAGGCTTGGAAGTTGAGATCCACAAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAGCCTAGGTGTGAGAGGCAGGCTTGGAAGTTGAGATCCACAAA  500

seq1  CAGGTCTGGATCTTGAGAGATCCAGATGAGAGAGGGACGATACCAGGAGA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGGATCTTGAGAGATCCAGATGAGAGAGGGACGATACCAGGAGA  550

seq1  GGGTGCTCGGAGGTGAGGCAGACAAGGCCAAACAGATTCAGATATATTTT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTCGGAGGTGAGGCAGACAAGGCCAAACAGATTCAGATATATTTT  600

seq1  AGAGGTAAAATATGCAGACGGTTCTGGAGGGGTGGGTGTGAGGGCTGAGG  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAAAATATGCAGACGGTTCTGGAGGGGTGGGTGTGAGGGCTGAGG  650

seq1  GAACGGTCGGACGCTTGGGTGGCTTGCTGTCCTTTGGCCTGAGCAACGGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGTCGGACGCTTGGGTGGCTTGCTGTCCTTTGGCCTGAGCAACGGA  700

seq1  GTGGGTGGTTTGTGGCACCTACTGAACCTATAAACCGCATAGGTAAGGGC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGTTTGTGGCACCTACTGAACCTATAAACCGCATAGGTAAGGGC  750

seq1  GGAATGCTTTGTTTGTCACTCTGGGAGGTAAAATTCAGAGGGTGGCTTAG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTTTGTTTGTCACTCTGGGAGGTAAAATTCAGAGGGTGGCTTAG  800

seq1  ATACTATCCGCATAAAAGCAGTCCAGAGTTAAAAGGCGTGGCTGCTCCAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATCCGCATAAAAGCAGTCCAGAGTTAAAAGGCGTGGCTGCTCCAC  850

seq1  ATTGCCACCAAAGACTCATGCTCTTTCAACTTAGTTCTGTTACTCTTTTT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCACCAAAGACTCATGCTCTTTCAACTTAGTTCTGTTACTCTTTTT  900

seq1  TTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTG  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTG  950

seq1  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAAC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTTGAAC  1000

seq1  TCAGAAATCCGCCTGCCTCTGCCTTCCAAGTGCTGGGTTCTGTTACTCTT  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCCGCCTGCCTCTGCCTTCCAAGTGCTGGGTTCTGTTACTCTT  1050

seq1  ATGCTCTGTCACTAGGACCCAAAATGGATGTTGAATTC  1070
      ||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTGTCACTAGGACCCAAAATGGATGTTGAATTC  1088

seq1: chr7_25114508_25115628
seq2: B6Ng01-181I12.g_69_1194

seq1  GAATTCTTCTGTCTCTGCCTCCCAGGTATCCCTGGAAGCACTATGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTCTCTGCCTCCCAGGTATCCCTGGAAGCACTATGGTCTG  50

seq1  GGGAGCACTGTGATCTCGGGAGCACTATGATTATAGGTGTGCAGTACCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACTGTGATCTCGGGAGCACTATGATTATAGGTGTGCAGTACCAT  100

seq1  ATCTGGCTTTATGTGGGCTCTGGGAATGCAAACTTAGTCCTCATCCTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTTTATGTGGGCTCTGGGAATGCAAACTTAGTCCTCATCCTTGC  150

seq1  ATGAAAGCCCTTTCCCCATGAAGCCATAGTTTCTTTCAGCCAAGAGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCCCTTTCCCCATGAAGCCATAGTTTCTTTCAGCCAAGAGCCTC  200

seq1  CTGGACGTGTTAAATTTAATTTCAGTTTAATGTTTGAATGTCTAACCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACGTGTTAAATTTAATTTCAGTTTAATGTTTGAATGTCTAACCTAT  250

seq1  TGTCTGCTTGCTTGTTGGTAGAAACACTCTCTACTTTCTAGTTGGCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTGCTTGTTGGTAGAAACACTCTCTACTTTCTAGTTGGCTGAT  300

seq1  TTCACAGAGCCCAAAGTGGCTTTTTCATAAGAAACCAATGTGTTTCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGCCCAAAGTGGCTTTTTCATAAGAAACCAATGTGTTTCTCCA  350

seq1  TACAATGAGATGCTTTTTATTCTACAAGCCAGTCAACCAGCAAGATCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATGAGATGCTTTTTATTCTACAAGCCAGTCAACCAGCAAGATCATA  400

seq1  GATTCTGGTACTGCCCAGAGGACTCTGACAGTGGTAGTGAAACAGTGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGGTACTGCCCAGAGGACTCTGACAGTGGTAGTGAAACAGTGCTC  450

seq1  TCCAGCTCTCTTTCCTTCGGGGATATGCATCCTTCCCACGAACAGAAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTCTTTCCTTCGGGGATATGCATCCTTCCCACGAACAGAAGTC  500

seq1  ATCCTATCTGTGTGTGCTCAGATCTGAAGCAAAGATCTGGGGACTGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTATCTGTGTGTGCTCAGATCTGAAGCAAAGATCTGGGGACTGGGGA  550

seq1  TGAGGCTGAGCCGGTAAAGTGCTTGCCTGCATTCAGAAAGCTGTGAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGAGCCGGTAAAGTGCTTGCCTGCATTCAGAAAGCTGTGAGTTT  600

seq1  GGTTCGGAGCAGATGCATCAAGCCTGTGAGTGCATGCCTATGCTCCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGAGCAGATGCATCAAGCCTGTGAGTGCATGCCTATGCTCCCAGC  650

seq1  ACTCAGGAGGTTGAGCCAGGAGGTAGAAGGGCATCCTAGGCAAAACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGTTGAGCCAGGAGGTAGAAGGGCATCCTAGGCAAAACAGTG  700

seq1  AGTTCAAGGCCAGCCTAGGATACTTGAGATTTTGACCCCAAAATTTAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCTAGGATACTTGAGATTTTGACCCCAAAATTTAAAT  750

seq1  AAACAAACAACAACACAACTGCTTGAAGGAAAGGAAGGAAACAACTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAACAACACAACTGCTTGAAGGAAAGGAAGGAAACAACTGCCC  800

seq1  CTCAGGGAACTCAAGCGCCTGTATGCAAATTTATTATTATCTTCACTCAT  850
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCA-GGAACTCAAGCGCCTGTATGCAAATTTATTATTATCTTCACTCAT  849

seq1  GCATATTCATCAAAGCAGCAGCTTTTAGGGATAATTTAGAA-CTCCAGGG  899
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GCATATTCATCAAAGCAGCAGCTTTTAGGGATAATTTTGAACCTCCAGGG  899

seq1  GGTATTTGGCAGACTACATTTTTAATG-TTTTCTCAACTACAATGAC-AA  947
      ||||||||||||||||||||||||||| ||||||| ||||||||||| ||
seq2  GGTATTTGGCAGACTACATTTTTAATGTTTTTCTC-ACTACAATGACAAA  948

seq1  AAAGAAAATTATTGCAGG-AGACTTTTAAAGACTCAGGC-TGCTGCT-GT  994
      |||||||||||||||||| |||||||| ||||||||||| ||||||| ||
seq2  AAAGAAAATTATTGCAGGAAGACTTTT-AAGACTCAGGCTTGCTGCTGGT  997

seq1  GCTAACAACA--GGCCTGCAGGAACCAGCAAGTGCTCACATTAGTGTG-G  1041
      ||||||||||  | ||||||||||||||||||||||||||||| |||| |
seq2  GCTAACAACAAGGCCCTGCAGGAACCAGCAAGTGCTCACATTA-TGTGTG  1046

seq1  AAGGGGCTGGAGATGGGACTTGG-AGGCCCAGCACTTGCTCAGCATGCAC  1090
       ||||||| ||||||| |||||| ||| |||||||| |||||||||||||
seq2  TAGGGGCT-GAGATGGAACTTGGAAGGGCCAGCACTGGCTCAGCATGCAC  1095

seq1  AAGGCCTAGGGTCAATTCTCATAAC-TACAAA  1121
       || | |||| |||||||||||| | ||||||
seq2  -AGCCTTAGGTTCAATTCTCATACCTTACAAA  1126