BAC Information

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BAC

Clone NameB6Ng01-181L24
Chromosome7 (Build37)
Map Location 10,284,036 - 10,498,761
singlet/doubletdoublet
Overlap geneLOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625
Upstream geneLOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126
Downstream geneLOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181L24.bB6Ng01-181L24.g
ACCGA007828GA007829
length1,169989
definitionB6Ng01-181L24.b B6Ng01-181L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,497,612 - 10,498,761)(10,284,036 - 10,285,028)
sequence
gaattcaagaagctggactccagaaaaccaaataaccccattaaaaatgg
ggtacaaacagagctaaacaaagaattctcaactgaggaatactgaatgg
cagagaagcacctaaagaaatgttcaacatccttaatgatcactgaaatg
caaatcaaaacaaccctgagattccatttcacaccagtcagaatggctga
gaacaaaaattcaggtgatagcagatgctggggaggatgtggtaaaagag
gaacactcctccattgctgacgggatggcaagctggtaaaaccactctgg
aaatcaatctggtgttttatcagcaaattggcaaatatagaactaatgga
agatccaccaatacctctcctgttcatatacccagaagatgttccaattt
gtaataggatatatgctccactatgttcatagcaacattatttataatag
ctgtgtagccctggctgtcctgaagctcactctgtagtccaggctgacct
tgaactccttcatatgtctgctatatgtaccaatgccacagggcagcaaa
caccatctttatgagcgtaaaattaataaataaaatgggactgtaagact
ggatcactatcagggacatcagccctcttcctgggcttagaatccaaatc
ccagagttgcaaaaatcaggtaaactaaggatcctctgccaacccataca
gcatctccaggccctcagacagggctgtccagagaggcacatgaatatgg
gtgattctacccaaggcttagaagagttataccgtggtggtgcaaatttc
agacctgtctaggatccaggtgaatgaatgcctttctctctctctttccc
tctctctctctctcctttctttctttcctttgagtcagcctttctctgtg
tagccttggctgcactagatggtagaccaagctagccacaaactcagata
tccactgggattatatgtatgcactaacaccttcctgccactcttcctgg
ctttatgcacaacagtggggttctggttaatgtagttcaaacagcttcac
caatggatatacaagacagtgcaagaatggacagttggagaacccatgtg
ttatgagataagccggaactccctacagacctgaaatacatttacatatg
gctcagtgttaattccccc
gaattcctggacgatgataactcacacgtggagataaaaagctgtccagg
tacttccagaaacttaatgataccttccaattgggtcctgaaatcagaaa
ggaacacatactctcttcattacagaaataattagggatagggctttttt
tttttttatgaaataaatatggtgtaggtgttacagtttttccatcacaa
tggcccaaagcgtatcttataatcaaagacatatttggtaaaagatcagg
atttctgttgatttcatccattgcaaacaccaatgccaaagcatatttgt
ggtttgtagttgtttttctgtaaaagagtacagtgtttattatggacaga
tgattatacgtgaatacttgtactcaatagaagcactatgcaatactgga
agtttgtgtatctcacgtctaaagattggaacaaatggcttttgttataa
gattggattgacaggtggacctggaaaatagtaagtactttaaaagttca
tgatcgtgttggtcccataaataagagatggtattgacctcatccacaga
gataatttccatttttgtttttgagtgcttgaccagaaggtaaagagaaa
accacagatattgacaaaacagtaattctgatcatgtcttcattttgaaa
ttattgagcaagaaataaatttgttattagagccactgagttcatgatat
tttcttgtgaaattaactgaattggttaaggaaatgaaaccatagccagg
agtggtgtcacacacctttaatcccagcacttgggatgcagacacaggtg
gaagaaaatagaaaaaagaaagaaagaaagaagtaaagaagaaagaaggg
aagaagaagaaagaaagaaggaagaagaagaaggagaaaagaagaatgaa
accatgatttatcaatgcattatggctctctctccagcaacatttgattc
ctgtactttataatcacttacaattggtggccaaatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10497612_10498761
seq2: B6Ng01-181L24.b_57_1215 (reverse)

seq1  GGGGGAAGGGAACACTGAG-CATATGTAAATGTA--TCTAGTCTGTAGGG  47
      |||||||   ||||||||| ||||||||||||||  ||  ||||||||||
seq2  GGGGGAA-TTAACACTGAGCCATATGTAAATGTATTTCAGGTCTGTAGGG  49

seq1  AGT--CCGCTTATCTCCTTACACATTGGTTCTCC-ACTGTCCATCTCTGC  94
      |||  | ||||||||| | |||||| |||||||| ||||||||| |||  
seq2  AGTTCCGGCTTATCTCATAACACATGGGTTCTCCAACTGTCCAT-TCTTG  98

seq1  AACTGTCCTG-GTATCCA-TGGTGAAGCTGTTTGAACTACATTAACCAGA  142
       |||||| ||  |||||| |||||||||||||||||||||||||||||||
seq2  CACTGTCTTGTATATCCATTGGTGAAGCTGTTTGAACTACATTAACCAGA  148

seq1  A-CCCACTG-TGTGCATAAAGGCAGGAAGAGTGGCAGG-AGGTGTTAGTG  189
      | ||||||| ||||||||||| |||||||||||||||| |||||||||||
seq2  ACCCCACTGTTGTGCATAAAGCCAGGAAGAGTGGCAGGAAGGTGTTAGTG  198

seq1  CATACATATAATCCCAGTGGATATCTGAGTTTGTGGCTAGCTTGGTCTAC  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATATAATCCCAGTGGATATCTGAGTTTGTGGCTAGCTTGGTCTAC  248

seq1  CATCTAGTGCAGCCAAGGCTACACAGAGAAAGGCTGACTCAAAGGAAAGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAGTGCAGCCAAGGCTACACAGAGAAAGGCTGACTCAAAGGAAAGA  298

seq1  AAGAAAGGAGAGAGAGAGAGAGGGAAAGAGAGAGAGAAAGGCATTCATTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAGAGAGAGAGAGAGGGAAAGAGAGAGAGAAAGGCATTCATTC  348

seq1  ACCTGGATCCTAGACAGGTCTGAAATTTGCACCACCACGGTATAACTCTT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGATCCTAGACAGGTCTGAAATTTGCACCACCACGGTATAACTCTT  398

seq1  CTAAGCCTTGGGTAGAATCACCCATATTCATGTGCCTCTCTGGACAGCCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCTTGGGTAGAATCACCCATATTCATGTGCCTCTCTGGACAGCCC  448

seq1  TGTCTGAGGGCCTGGAGATGCTGTATGGGTTGGCAGAGGATCCTTAGTTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGGGCCTGGAGATGCTGTATGGGTTGGCAGAGGATCCTTAGTTT  498

seq1  ACCTGATTTTTGCAACTCTGGGATTTGGATTCTAAGCCCAGGAAGAGGGC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATTTTTGCAACTCTGGGATTTGGATTCTAAGCCCAGGAAGAGGGC  548

seq1  TGATGTCCCTGATAGTGATCCAGTCTTACAGTCCCATTTTATTTATTAAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCCCTGATAGTGATCCAGTCTTACAGTCCCATTTTATTTATTAAT  598

seq1  TTTACGCTCATAAAGATGGTGTTTGCTGCCCTGTGGCATTGGTACATATA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGCTCATAAAGATGGTGTTTGCTGCCCTGTGGCATTGGTACATATA  648

seq1  GCAGACATATGAAGGAGTTCAAGGTCAGCCTGGACTACAGAGTGAGCTTC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATATGAAGGAGTTCAAGGTCAGCCTGGACTACAGAGTGAGCTTC  698

seq1  AGGACAGCCAGGGCTACACAGCTATTATAAATAATGTTGCTATGAACATA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACACAGCTATTATAAATAATGTTGCTATGAACATA  748

seq1  GTGGAGCATATATCCTATTACAAATTGGAACATCTTCTGGGTATATGAAC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCATATATCCTATTACAAATTGGAACATCTTCTGGGTATATGAAC  798

seq1  AGGAGAGGTATTGGTGGATCTTCCATTAGTTCTATATTTGCCAATTTGCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTATTGGTGGATCTTCCATTAGTTCTATATTTGCCAATTTGCT  848

seq1  GATAAAACACCAGATTGATTTCCAGAGTGGTTTTACCAGCTTGCCATCCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACACCAGATTGATTTCCAGAGTGGTTTTACCAGCTTGCCATCCC  898

seq1  GTCAGCAATGGAGGAGTGTTCCTCTTTTACCACATCCTCCCCAGCATCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAATGGAGGAGTGTTCCTCTTTTACCACATCCTCCCCAGCATCTG  948

seq1  CTATCACCTGAATTTTTGTTCTCAGCCATTCTGACTGGTGTGAAATGGAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACCTGAATTTTTGTTCTCAGCCATTCTGACTGGTGTGAAATGGAA  998

seq1  TCTCAGGGTTGTTTTGATTTGCATTTCAGTGATCATTAAGGATGTTGAAC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGTTGTTTTGATTTGCATTTCAGTGATCATTAAGGATGTTGAAC  1048

seq1  ATTTCTTTAGGTGCTTCTCTGCCATTCAGTATTCCTCAGTTGAGAATTCT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGGTGCTTCTCTGCCATTCAGTATTCCTCAGTTGAGAATTCT  1098

seq1  TTGTTTAGCTCTGTTTGTACCCCATTTTTAATGGGGTTATTTGGTTTTCT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGCTCTGTTTGTACCCCATTTTTAATGGGGTTATTTGGTTTTCT  1148

seq1  GGAGTCCAGCT  1150
      |||||||||||
seq2  GGAGTCCAGCT  1159

seq1: chr7_10284036_10285028
seq2: B6Ng01-181L24.g_66_1050

seq1  GAATTCCTGGACGATGATAACTCACACGTGGAGATAAAAAGCTGTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGACGATGATAACTCACACGTGGAGATAAAAAGCTGTCCAGG  50

seq1  TACTTCCAGAAACTTAATGATACCTTCCAATTGGGTCCTGAAATCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAGAAACTTAATGATACCTTCCAATTGGGTCCTGAAATCAGAAA  100

seq1  GGAACACATACTCTCTTCATTACAGAAATAATTAGGGATAGGGCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACATACTCTCTTCATTACAGAAATAATTAGGGATAGGGCTTTTTT  150

seq1  TTTTTTTATGAAATAAATATGGTGTAGGTGTTACAGTTTTTCCATCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATGAAATAAATATGGTGTAGGTGTTACAGTTTTTCCATCACAA  200

seq1  TGGCCCAAAGCGTATCTTATAATCAAAGACATATTTGGTAAAAGATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAAAGCGTATCTTATAATCAAAGACATATTTGGTAAAAGATCAGG  250

seq1  ATTTCTGTTGATTTCATCCATTGCAAACACCAATGCCAAAGCATATTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGATTTCATCCATTGCAAACACCAATGCCAAAGCATATTTGT  300

seq1  GGTTTGTAGTTGTTTTTCTGTAAAAGAGTACAGTGTTTATTATGGACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGTTGTTTTTCTGTAAAAGAGTACAGTGTTTATTATGGACAGA  350

seq1  TGATTATACGTGAATACTTGTACTCAATAGAAGCACTATGCAATACTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATACGTGAATACTTGTACTCAATAGAAGCACTATGCAATACTGGA  400

seq1  AGTTTGTGTATCTCACGTCTAAAGATTGGAACAAATGGCTTTTGTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGTATCTCACGTCTAAAGATTGGAACAAATGGCTTTTGTTATAA  450

seq1  GATTGGATTGACAGGTGGACCTGGAAAATAGTAAGTACTTTAAAAGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATTGACAGGTGGACCTGGAAAATAGTAAGTACTTTAAAAGTTCA  500

seq1  TGATCGTGTTGGTCCCATAAATAAGAGATGGTATTGACCTCATCCACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCGTGTTGGTCCCATAAATAAGAGATGGTATTGACCTCATCCACAGA  550

seq1  GATAATTTCCATTTTTGTTTTTGAGTGCTTGACCAGAAGGTAAAGAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTCCATTTTTGTTTTTGAGTGCTTGACCAGAAGGTAAAGAGAAA  600

seq1  ACCACAGATATTGACAAAACAGTAATTCTGATCATGTCTTCATTTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGATATTGACAAAACAGTAATTCTGATCATGTCTTCATTTTGAAA  650

seq1  TTATTGAGCAAGAAATAAATTTGTTATTAGAGCCACTGAGTTCATGATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGAGCAAGAAATAAATTTGTTATTAGAGCCACTGAGTTCATGATAT  700

seq1  TTTCTTGTGAAATTAACTGAATTGGTTAAGGAAATGAAACCATAGCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGAAATTAACTGAATTGGTTAAGGAAATGAAACCATAGCCAGG  750

seq1  AGTGGTGTCACACACCTTTAATCCCAGCACTTGGGATGCAGACACAGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTCACACACCTTTAATCCCAGCACTTGGGATGCAGACACAGGTG  800

seq1  GAAGAAAATAGAAAAAAGAAAGAAAGAAAGAAGTAAAGAAGAAAGAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGAAAATAGAAAAAAGAAAGAAAGAAAGAAGTAAAGAAGAAAGAAGGG  850

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAAAGAAA  900
      |||||   ||||||||||| ||| |||||   ||||| ||| ||||||| 
seq2  AAGAA--GAAGAAAGAAAG-AAGGAAGAA--GAAGAAGGAG-AAAAGAA-  893

seq1  GAAATGAAACCATGATTTATCAATGCATAATGGTCTCTCTCTCCAGCAAC  950
        |||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  -GAATGAAACCATGATTTATCAATGCATTATGG-CTCTCTCTCCAGCAAC  941

seq1  ATTTGATTCCTGTAC-TTATAATCACTTACAATTTGTGGCCAAA  993
      ||||||||||||||| |||||||||||||||||| |||||||||
seq2  ATTTGATTCCTGTACTTTATAATCACTTACAATTGGTGGCCAAA  985