BAC Information

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BAC

Clone NameB6Ng01-182M16
Chromosome7 (Build37)
Map Location 53,728,608 - 53,874,121
singlet/doubletdoublet
Overlap geneSergef
Upstream geneDhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
Downstream geneTph1, Saal1, Saa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182M16.bB6Ng01-182M16.g
ACCGA008589GA008590
length1,175410
definitionB6Ng01-182M16.b B6Ng01-182M16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,728,608 - 53,729,782)(53,873,706 - 53,874,121)
sequence
gaattctgtagcttcagccccgatcctggcccgctgtgctgttgggaagc
acggatgtgtgcaggctcgtgactgcagccctgctcccagcaggcccctg
ctgccagcttccgctcttcagtgacctctcccattactgaatttggcctt
cagtgggaaatgaatttgggaaccgactctcgggtctgacaagcagccag
ataacaaaggtatcagaccggagtcagggataggcacctggggaatgctg
gtgctgatctctctccactgggcaaacatggagatgtgctgagctaaatc
tgcttttaaaagcaaaacagctccctccccttcttttccttcctccttcc
ctatagagacaagagagatgtttgtaaattggtaaaaataaattatagta
agtccttcaaggttgacaagaggggcttttagtgagcagtaagacgtggc
taaccctgggcttgctccacacggtcagcagtagtcctctacaatggatt
ggcaggaggactgcaaaggagggctgaactgtccttactgagtccaggcc
tgcctggacccctgactccagctaagcccagtatccctgagaccacagaa
gtctagagtgtatggtggtcttgctcaccaatccacagaaactcactacc
cttcccccattttccttcaagaatttcttcttccagactgaaaactggga
ctcatttgtctgagctaaaaggctatgttatatggagccacttcttacaa
tgagcccttgggacactgcagagaccctggctggtggtgaagccttataa
atccaggggcagccaacaatttcactctacactgagcttgcctgctcgct
tgcgtggagggcccggcacttatttttggcccttataaataacacatttt
gttatcttgattcttcaggcctccctttttagctattttttccagctttg
gggaaaacactcttactgtacagggcagagtcattcataaatcagaggag
atcagttgtccaaagccggagttcctcggctttggctggacaccaaacct
atagttcaaatcagaggctgtcctcacaccatggatgaggattcagaaac
caaccctcagttccttgaacctttcacccagagtctactgtatgaaccca
ataaacgtacagccacttccttaca
tacagcagtgtgtgctgttgcaggatctgaccactcggcctcattaacag
gtgggtaccagccgaatgtgccattcagatgtctgcaggctgtggcctgg
aatgaggctgagtcagagttttgcgggggagggtatagattttggagtgg
gagtttggtaccgctctaggtataattttaggcacagttgctttcgcttt
tgagaccgtctcttcatctggaacatactttctgggtagctgtaagaact
tagttggatggtacgtataaagtactcacatcaagcgtcagctcagtgct
cagcctctgcgttctctcaattatacagggtggaaaagattatcttcctc
ttgggggagctgtgatgggaagatcaagagctcaacatttaatttatata
tatccacgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53728608_53729782
seq2: B6Ng01-182M16.b_45_1219

seq1  GAATTCTGTAGCTTCAGCCCCGATCCTGGCCCGCTGTGCTGTTGGGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCTTCAGCCCCGATCCTGGCCCGCTGTGCTGTTGGGAAGC  50

seq1  ACGGATGTGTGCAGGCTCGTGACTGCAGCCCTGCTCCCAGCAGGCCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGATGTGTGCAGGCTCGTGACTGCAGCCCTGCTCCCAGCAGGCCCCTG  100

seq1  CTGCCAGCTTCCGCTCTTCAGTGACCTCTCCCATTACTGAATTTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCTTCCGCTCTTCAGTGACCTCTCCCATTACTGAATTTGGCCTT  150

seq1  CAGTGGGAAATGAATTTGGGAACCGACTCTCGGGTCTGACAAGCAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAATGAATTTGGGAACCGACTCTCGGGTCTGACAAGCAGCCAG  200

seq1  ATAACAAAGGTATCAGACCGGAGTCAGGGATAGGCACCTGGGGAATGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGGTATCAGACCGGAGTCAGGGATAGGCACCTGGGGAATGCTG  250

seq1  GTGCTGATCTCTCTCCACTGGGCAAACATGGAGATGTGCTGAGCTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATCTCTCTCCACTGGGCAAACATGGAGATGTGCTGAGCTAAATC  300

seq1  TGCTTTTAAAAGCAAAACAGCTCCCTCCCCTTCTTTTCCTTCCTCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAAAAGCAAAACAGCTCCCTCCCCTTCTTTTCCTTCCTCCTTCC  350

seq1  CTATAGAGACAAGAGAGATGTTTGTAAATTGGTAAAAATAAATTATAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAGACAAGAGAGATGTTTGTAAATTGGTAAAAATAAATTATAGTA  400

seq1  AGTCCTTCAAGGTTGACAAGAGGGGCTTTTAGTGAGCAGTAAGACGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTCAAGGTTGACAAGAGGGGCTTTTAGTGAGCAGTAAGACGTGGC  450

seq1  TAACCCTGGGCTTGCTCCACACGGTCAGCAGTAGTCCTCTACAATGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGGCTTGCTCCACACGGTCAGCAGTAGTCCTCTACAATGGATT  500

seq1  GGCAGGAGGACTGCAAAGGAGGGCTGAACTGTCCTTACTGAGTCCAGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAGGACTGCAAAGGAGGGCTGAACTGTCCTTACTGAGTCCAGGCC  550

seq1  TGCCTGGACCCCTGACTCCAGCTAAGCCCAGTATCCCTGAGACCACAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGACCCCTGACTCCAGCTAAGCCCAGTATCCCTGAGACCACAGAA  600

seq1  GTCTAGAGTGTATGGTGGTCTTGCTCACCAATCCACAGAAACTCACTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGTGTATGGTGGTCTTGCTCACCAATCCACAGAAACTCACTACC  650

seq1  CTTCCCCCATTTTCCTTCAAGAATTTCTTCTTCCAGACTGAAAACTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCATTTTCCTTCAAGAATTTCTTCTTCCAGACTGAAAACTGGGA  700

seq1  CTCATTTGTCTGAGCTAAAAGGCTATGTTATATGGAGCCACTTCTTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTGTCTGAGCTAAAAGGCTATGTTATATGGAGCCACTTCTTACAA  750

seq1  TGAGCCCTTGGGACACTGCAGAGACCCTGGCTGGTGGTGAAGCCTTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCTTGGGACACTGCAGAGACCCTGGCTGGTGGTGAAGCCTTATAA  800

seq1  ATCCAGGGGCAGCCAACAATTTCACTCTACACTGAGCTTGCCTGCTCGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGGGCAGCCAACAATTTCACTCTACACTGAGCTTGCCTGCTCGCT  850

seq1  TGCGTGGAGGGCCCGGCACTTATTTTTGGCCCTTATAAATAACACATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTGGAGGGCCCGGCACTTATTTTTGGCCCTTATAAATAACACATTTT  900

seq1  GTTATCTTGATTCTTCAGGCCT-CCTTTTTAGCTATTTTTTTCCAGCTTT  949
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GTTATCTTGATTCTTCAGGCCTCCCTTTTTAGCTA-TTTTTTCCAGCTTT  949

seq1  GGGAAAAACACTCTTACTGTACAAGGCAGAGTCATTCATAAATCAAGAGG  999
      ||| ||||||||||||||||||| |||||||||||||||||||| |||||
seq2  GGGGAAAACACTCTTACTGTACAGGGCAGAGTCATTCATAAATC-AGAGG  998

seq1  AGATCAAGTGTCCAAAGCCGGAGTT-CTCGGCTTTGGCTGGACACCAAAA  1048
      ||||||  ||||||||||||||||| |||||||||||||||||||| |||
seq2  AGATCAGTTGTCCAAAGCCGGAGTTCCTCGGCTTTGGCTGGACACC-AAA  1047

seq1  CCTATTAGTCAAATCAGAAGCTGTTCTCACA-CAAGGA-GAGGAATCAGA  1096
      |||||   |||||||||| ||||| |||||| || ||| ||||| |||||
seq2  CCTATAGTTCAAATCAGAGGCTGTCCTCACACCATGGATGAGGATTCAGA  1097

seq1  AA-CAACCCTCAGGTTTCTTG-ACCTTTCACCCAGGAAGTCCTACTGTAT  1144
      || ||||||||| ||| |||| |||||||||||||  ||| |||||||||
seq2  AACCAACCCTCA-GTTCCTTGAACCTTTCACCCAG--AGT-CTACTGTAT  1143

seq1  GACCCTCATACAC-TACAGCCAACTCCTTACA  1175
      || ||  ||| || ||||||||  ||||||||
seq2  GAACCCAATAAACGTACAGCCACTTCCTTACA  1175

seq1: chr7_53873706_53874121
seq2: B6Ng01-182M16.g_66_481 (reverse)

seq1  TACGTGGCTATATATAAATTAACTGTTGAGCTCTTGATCTTCCCATCACA  50
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TACGTGGATATATATAAATTAAATGTTGAGCTCTTGATCTTCCCATCACA  50

seq1  GCTCCCCCAAGAGGAAGATAATCTTTTCCACCCTGTATAATTGAGAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCAAGAGGAAGATAATCTTTTCCACCCTGTATAATTGAGAGAAC  100

seq1  GCAGAGGCTGAGCACTGAGCTGACGCTTGATGTGAGTACTTTATACGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCTGAGCACTGAGCTGACGCTTGATGTGAGTACTTTATACGTAC  150

seq1  CATCCAACTAAGTTCTTACAGCTACCCAGAAAGTATGTTCCAGATGAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAACTAAGTTCTTACAGCTACCCAGAAAGTATGTTCCAGATGAAGA  200

seq1  GACGGTCTCAAAAGCGAAAGCAACTGTGCCTAAAATTATACCTAGAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCTCAAAAGCGAAAGCAACTGTGCCTAAAATTATACCTAGAGCGG  250

seq1  TACCAAACTCCCACTCCAAAATCTATACCCTCCCCCGCAAAACTCTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACTCCCACTCCAAAATCTATACCCTCCCCCGCAAAACTCTGACT  300

seq1  CAGCCTCATTCCAGGCCACAGCCTGCAGACATCTGAATGGCACATTCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCATTCCAGGCCACAGCCTGCAGACATCTGAATGGCACATTCGGC  350

seq1  TGGTACCCACCTGTTAATGAGGCCGAGTGGTCAGATCCTGCAACAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCCACCTGTTAATGAGGCCGAGTGGTCAGATCCTGCAACAGCACA  400

seq1  CACTGCTGTAGAATTC  416
      ||||||||||||||||
seq2  CACTGCTGTAGAATTC  416