BAC Information

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BAC

Clone NameB6Ng01-184F03
Chromosome7 (Build37)
Map Location 105,619,737 - 105,760,999
singlet/doubletdoublet
Overlap geneGucy2d, EG434215, A630091E08Rik, 2210018M11Rik
Upstream geneInts4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, LOC100040721
Downstream geneLOC100040769, Prkrir, Wnt11, LOC666978, Uvrag, EG666529, Dgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184F03.bB6Ng01-184F03.g
ACCGA009727GA009728
length263573
definitionB6Ng01-184F03.b B6Ng01-184F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,619,737 - 105,620,000)(105,760,421 - 105,760,999)
sequence
gaattcccaggggcacttgatgtgttaaaataacggctctcatctgaaca
caaaacactgggcccaaacagttccacgtgtgagaagtttattgggagag
agaggggctggaaggaaggtggtggcagaaagaaaagggggaaagagaga
gagagagagggaggggtgttccccttatttatatggaaaattacccgcat
gtgaaggtgggaggtgagccaagtggattctgggaatatggttgccgttg
tcttgacaacaag
ctttgggataaaatttcctgaagatatttatgactgtgagaactggatag
ctgaggaggacagagaactggaaactagtttctttctatgaatggacagg
atctgcacagatgcttatgaaagatacttaagaaagtttgttttattcca
gccctacataacagatgctggtgatgagttcattttcagactgtaaaagt
ctgagaataagggtataatctcaccttggtttaggctgttgactttgtag
gtgcttttctgagactatcgaagcagtatcagctttggttgagaaataga
atcatagagtttttgtaaaaggtattcatctaaactcataattggctttt
ggaatctgttccttcaaaactatagccattgtttatatattttaaaaagt
agctttgttataagcttaagttatttattcagttcagcagtaatgatttc
atttgtttcaccatgtaaattataacaaatcatgtttttaaactcaggga
aatcagtgctttaatagaacctcatatatgggtcagtagtagtatttttg
gtggtgatggtggtattgggtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_105619737_105620000
seq2: B6Ng01-184F03.b_40_302

seq1  GAATTCCCAGGGGCACTTGATGTGTTAAAATAACGGCTCTCATCTGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGGGCACTTGATGTGTTAAAATAACGGCTCTCATCTGAACA  50

seq1  CAAAACACTGGGCCCAAACAGTTCCACGTGTGAGAAGTTTATTGGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACTGGGCCCAAACAGTTCCACGTGTGAGAAGTTTATTGGGAGAG  100

seq1  AGAGGGGCTGGAAGGAAGGTGGTGGCAGAAAGAAAAGGGGGAAAGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTGGAAGGAAGGTGGTGGCAGAAAGAAAAGGGGGAAAGAGAGA  150

seq1  GAGAGAGAGGGAGGGGTGTTCCCCTTATTTATATGGAAAATAACAACGCA  200
      ||||||||||||||||||||||||||||||||||||||||| ||  ||||
seq2  GAGAGAGAGGGAGGGGTGTTCCCCTTATTTATATGGAAAATTAC-CCGCA  199

seq1  GGTAAAGGTGGGAGGTGAGCCAAGTGGATTCTGGGAATATGGTTGCCGTT  250
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGTGGGAGGTGAGCCAAGTGGATTCTGGGAATATGGTTGCCGTT  249

seq1  GTCTTGGCAACAAG  264
      |||||| |||||||
seq2  GTCTTGACAACAAG  263

seq1: chr7_105760421_105760999
seq2: B6Ng01-184F03.g_66_644 (reverse)

seq1  ATACCCAATACCACCATCACCACCAAAAATACTACTACTGACCCATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAATACCACCATCACCACCAAAAATACTACTACTGACCCATATAT  50

seq1  GAGGTTCTATTAAAGCACTGATTTCCCTGAGTTTAAAAACATGATTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTATTAAAGCACTGATTTCCCTGAGTTTAAAAACATGATTTGTT  100

seq1  ATAATTTACATGGTGAAACAAATGAAATCATTACTGCTGAACTGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACATGGTGAAACAAATGAAATCATTACTGCTGAACTGAATAAA  150

seq1  TAACTTAAGCTTATAACAAAGCTACTTTTTAAAATATATAAACAATGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAGCTTATAACAAAGCTACTTTTTAAAATATATAAACAATGGCT  200

seq1  ATAGTTTTGAAGGAACAGATTCCAAAAGCCAATTATGAGTTTAGATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTGAAGGAACAGATTCCAAAAGCCAATTATGAGTTTAGATGAAT  250

seq1  ACCTTTTACAAAAACTCTATGATTCTATTTCTCAACCAAAGCTGATACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTACAAAAACTCTATGATTCTATTTCTCAACCAAAGCTGATACTG  300

seq1  CTTCGATAGTCTCAGAAAAGCACCTACAAAGTCAACAGCCTAAACCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGATAGTCTCAGAAAAGCACCTACAAAGTCAACAGCCTAAACCAAGG  350

seq1  TGAGATTATACCCTTATTCTCAGACTTTTACAGTCTGAAAATGAACTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATACCCTTATTCTCAGACTTTTACAGTCTGAAAATGAACTCAT  400

seq1  CACCAGCATCTGTTATGTAGGGCTGGAATAAAACAAACTTTCTTAAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCATCTGTTATGTAGGGCTGGAATAAAACAAACTTTCTTAAGTAT  450

seq1  CTTTCATAAGCATCTGTGCAGATCCTGTCCATTCATAGAAAGAAACTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAAGCATCTGTGCAGATCCTGTCCATTCATAGAAAGAAACTAGT  500

seq1  TTCCAGTTCTCTGTCCTCCTCAGCTATCCAGTTCTCACAGTCATAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTCTCTGTCCTCCTCAGCTATCCAGTTCTCACAGTCATAAATAT  550

seq1  CTTCAGGAAATTTTATCCCAAAGGAATTC  579
      |||||||||||||||||||||||||||||
seq2  CTTCAGGAAATTTTATCCCAAAGGAATTC  579