BAC Information

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BAC

Clone NameB6Ng01-186A05
Chromosome7 (Build37)
Map Location 26,344,231 - 26,462,035
singlet/doubletdoublet
Overlap geneLOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik
Upstream geneXrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2
Downstream geneBC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968, Cyp2a4, Nlrp9c, LOC100043195, Nlrp4a, Nlrp9a, V1re12, EG243881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186A05.bB6Ng01-186A05.g
ACCGA010970GA010971
length8321,104
definitionB6Ng01-186A05.b B6Ng01-186A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,344,231 - 26,345,061)(26,460,930 - 26,462,035)
sequence
gaattcaggtttacttaatgcatgttccatagtctagccactcttcctac
ctttctctgatcagtctcacactgtgggtgacactgaggcgatccagtgc
ggggcttcactcacttcctgatgaagcggcggttcagtgcagaccttcac
tcacctcttgacgaagcgacaacccaaggaaaagagtgctctctctcaga
ccccaaacccagagccataagctgggcgccagtttgccctgacctgcagg
tataatcagcaggaacctagggcaagggagtgagatagtggggggggaag
agacaggaagaatgagagcaagaatcatactgattaagctctaaaaactt
tattcggtagaggcaatataagcataagcaaaaggaggctccaagggagg
ggggaagagcccgagggatctctgaaggtcaggtgacaatcttcaggtcc
tggaaccaacggtcacagtgtcctctttttccacacatattcttaatgtt
attttttttaccctatcactagctctaaccctaactctaaccctaaacct
aaccctagccctaaccctaaccctagccctagccctaaccctaactctaa
ctctaaccctagctctaaccctaatcctagcactacctctaaccctagcc
ctatccctaaccctagctcagacagagacacgagctgcacaggcaacggt
taatgccaggcaggccgggtccctatggaaggaagaaggatggtagaacg
gggctatattgaccagtgagcaggaatgatgctctgccatgatggttgcc
tctcggtcgtacaagactgggtttggtcccct
gaattcactaggagggtaaggatgatgggtgttactgagctcagtggtct
gatggaaaaatgaggctagttaggagttcataccctcatccgtgagtccg
aaaggagggccttctttgtgccatgcacttttttttcaggcccgaggcac
atccctgaacaaaagagactaaatcccagccccagtggagctggtgttga
tgggagcaggcaggagcggcatgcaaacggaagcgggtagcagtttttta
acgtggcgtaaaagacaaatagagcaagaggaaggagctagtaaatacct
tctggtgaaaaccatcctggcccttgcccctggcgttatccctcccgtgg
gtctctgtgccagacactcagactgagccaagcatgctcccagacgccat
ctgctctctccgggagtggggccggtgccagcttgagtgtttggactctt
ggcaaagttccctggcaccctagagctagggaactccacggcctcacatc
gggaatcctcctgtctagccagatggagggcggcaggaaagggaggcagt
gcaaactgggtgggcttcctgaaggaggggatgtcttggagggccaggag
cgttcttcagttgaacggacacgtattataaatcataaaattgataaaca
cattacatgtgttcactgcgcttactttgccagactttgggtaaatgtgt
gggcatttgttgtcacatctaagttaaaatccatatgtcgggctgtggaa
atgactcagaggaaaggggggcttgctgctaatcctgataatctatgttg
gatcccaggaacatatctggtggaagaaaagaaccaactcctacaattca
tccactgacttctacacatgcttgctctacatagcatgtgtgcaccacac
aaaagaaataaatgtaatataaaaatttttttgtttttgtttttggagaa
agggtttctctgtgtagccctgcctgtcctggaactcacttgtagaccag
gctggctcaaactcagaaatccgcctgcctctgcctcccgagtgcctggg
attaagcctgtgtgcacccaacactcggcataaaaatgttaattggttat
caca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_26344231_26345061
seq2: B6Ng01-186A05.b_41_871

seq1  GAATTCAGGTTTACTTAATGCATGTTCCATAGTCTAGCCACTCTTCCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTTACTTAATGCATGTTCCATAGTCTAGCCACTCTTCCTAC  50

seq1  CTTTCTCTGATCAGTCTCACACTGTGGGTGACACTGAGGCGATCCAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGATCAGTCTCACACTGTGGGTGACACTGAGGCGATCCAGTGC  100

seq1  GGGGCTTCACTCACTTCCTGATGAAGCGGCGGTTCAGTGCAGACCTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTCACTCACTTCCTGATGAAGCGGCGGTTCAGTGCAGACCTTCAC  150

seq1  TCACCTCTTGACGAAGCGACAACCCAAGGAAAAGAGTGCTCTCTCTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTGACGAAGCGACAACCCAAGGAAAAGAGTGCTCTCTCTCAGA  200

seq1  CCCCAAACCCAGAGCCATAAGCTGGGCGCCAGTTTGCCCTGACCTGCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACCCAGAGCCATAAGCTGGGCGCCAGTTTGCCCTGACCTGCAGG  250

seq1  TATAATCAGCAGGAACCTAGGGCAAGGGAGTGAGATAGTGGGGGGGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCAGCAGGAACCTAGGGCAAGGGAGTGAGATAGTGGGGGGGGAAG  300

seq1  AGACAGGAAGAATGAGAGCAAGAATCATACTGATTAAGCTCTAAAAACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAAGAATGAGAGCAAGAATCATACTGATTAAGCTCTAAAAACTT  350

seq1  TATTCGGTAGAGGCAATATAAGCATAAGCAAAAGGAGGCTCCAAGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGGTAGAGGCAATATAAGCATAAGCAAAAGGAGGCTCCAAGGGAGG  400

seq1  GGGGAAGAGCCCGAGGGATCTCTGAAGGTCAGGTGACAATCTTCAGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAGCCCGAGGGATCTCTGAAGGTCAGGTGACAATCTTCAGGTCC  450

seq1  TGGAACCAACGGTCACAGTGTCCTCTTTTCCCACACATATTCTTAATGTT  500
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGAACCAACGGTCACAGTGTCCTCTTTTTCCACACATATTCTTAATGTT  500

seq1  ATTTTTTTTACCCTAGCACTAGCTCTAACCCTAACTCTAACCCTAAACCT  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTACCCTATCACTAGCTCTAACCCTAACTCTAACCCTAAACCT  550

seq1  AACCCTAGCCCTAACCCTAACCCTAGCCCTAGCCCTAACCCTAACTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTAGCCCTAACCCTAACCCTAGCCCTAGCCCTAACCCTAACTCTAA  600

seq1  CCCTAACCCTAGCTCTAACCCTAATCCTAGCACTACCTCTAACCCTAGCC  650
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACCCTAGCTCTAACCCTAATCCTAGCACTACCTCTAACCCTAGCC  650

seq1  CTAACCCTAACCCTAGCTCAGACAGAGACACGAGCTGCACAGGCAACGGT  700
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCTAACCCTAGCTCAGACAGAGACACGAGCTGCACAGGCAACGGT  700

seq1  TAAGGCCAGGCAGGCCGGGTCCC-AAGGAAGGAAGAAGGAAGGTAGAACG  749
      ||| ||||||||||||||||||| | |||||||||||||| |||||||||
seq2  TAATGCCAGGCAGGCCGGGTCCCTATGGAAGGAAGAAGGATGGTAGAACG  750

seq1  GGGC-AGAAGGACCAGGGAGGCAGGAAGGATGCACAGCCAGGATGG-TGC  797
      |||| | |  |||||| || ||||||| ||||| | |||| ||||| |||
seq2  GGGCTATATTGACCAGTGA-GCAGGAATGATGCTCTGCCATGATGGTTGC  799

seq1  CTCTCGGTCGGACAAGGACTGGGGCTTGGTCCCC  831
      |||||||||| |||| |||| ||| |||||||||
seq2  CTCTCGGTCGTACAA-GACT-GGGTTTGGTCCCC  831

seq1: chr7_26460930_26462035
seq2: B6Ng01-186A05.g_65_1168 (reverse)

seq1  TGTGATAACAATTAAACATTTTTTTATGCCGAGTG-TGGTGGCACACGCC  49
      ||||||||| | | ||||  ||||||||||||||| |||  ||||||   
seq2  TGTGATAACCAATTAACA--TTTTTATGCCGAGTGTTGGGTGCACACAGG  48

seq1  TTTAATCCCA-GCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGA  98
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCCAGGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGA  98

seq1  GGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGA  148
       ||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  -GCCAGCCTGGTCTAC-AAGTGAGTTCCAGGACAGGCAGGGCTACACAGA  146

seq1  GAAACCCTGTCTCCAAAAACAAAAACAAAAAAATTTTTATATTACATTTA  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTTTCTCCAAAAACAAAAACAAAAAAATTTTTATATTACATTTA  196

seq1  TTTCTTTTGTGTGGTGCACACATGCTATGTAGAGCAAGCATGTGTAGAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTGTGGTGCACACATGCTATGTAGAGCAAGCATGTGTAGAAG  246

seq1  TCAGTGGATGAATTGTAGGAGTTGGTTCTTTTCTTCCACCAGATATGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGATGAATTGTAGGAGTTGGTTCTTTTCTTCCACCAGATATGTTC  296

seq1  CTGGGATCCAACATAGATTATCAGGATTAGCAGCAAGCCCCCCTTTCCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCCAACATAGATTATCAGGATTAGCAGCAAGCCCCCCTTTCCTC  346

seq1  TGAGTCATTTCCACAGCCCGACATATGGATTTTAACTTAGATGTGACAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATTTCCACAGCCCGACATATGGATTTTAACTTAGATGTGACAAC  396

seq1  AAATGCCCACACATTTACCCAAAGTCTGGCAAAGTAAGCGCAGTGAACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCCACACATTTACCCAAAGTCTGGCAAAGTAAGCGCAGTGAACAC  446

seq1  ATGTAATGTGTTTATCAATTTTATGATTTATAATACGTGTCCGTTCAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGTGTTTATCAATTTTATGATTTATAATACGTGTCCGTTCAACT  496

seq1  GAAGAACGCTCCTGGCCCTCCAAGACATCCCCTCCTTCAGGAAGCCCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACGCTCCTGGCCCTCCAAGACATCCCCTCCTTCAGGAAGCCCACC  546

seq1  CAGTTTGCACTGCCTCCCTTTCCTGCCGCCCTCCATCTGGCTAGACAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCACTGCCTCCCTTTCCTGCCGCCCTCCATCTGGCTAGACAGGA  596

seq1  GGATTCCCGATGTGAGGCCGTGGAGTTCCCTAGCTCTAGGGTGCCAGGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCCGATGTGAGGCCGTGGAGTTCCCTAGCTCTAGGGTGCCAGGGA  646

seq1  ACTTTGCCAAGAGTCCAAACACTCAAGCTGGCACCGGCCCCACTCCCGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCCAAGAGTCCAAACACTCAAGCTGGCACCGGCCCCACTCCCGGA  696

seq1  GAGAGCAGATGGCGTCTGGGAGCATGCTTGGCTCAGTCTGAGTGTCTGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGATGGCGTCTGGGAGCATGCTTGGCTCAGTCTGAGTGTCTGGC  746

seq1  ACAGAGACCCACGGGAGGGATAACGCCAGGGGCAAGGGCCAGGATGGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACCCACGGGAGGGATAACGCCAGGGGCAAGGGCCAGGATGGTTT  796

seq1  TCACCAGAAGGTATTTACTAGCTCCTTCCTCTTGCTCTATTTGTCTTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAAGGTATTTACTAGCTCCTTCCTCTTGCTCTATTTGTCTTTTA  846

seq1  CGCCACGTTAAAAAACTGCTACCCGCTTCCGTTTGCATGCCGCTCCTGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACGTTAAAAAACTGCTACCCGCTTCCGTTTGCATGCCGCTCCTGCC  896

seq1  TGCTCCCATCAACACCAGCTCCACTGGGGCTGGGATTTAGTCTCTTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCATCAACACCAGCTCCACTGGGGCTGGGATTTAGTCTCTTTTGT  946

seq1  TCAGGGATGTGCCTCGGGCCTGAAAAAAAAGTGCATGGCACAAAGAAGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATGTGCCTCGGGCCTGAAAAAAAAGTGCATGGCACAAAGAAGGC  996

seq1  CCTCCTTTCGGACTCACGGATGAGGGTATGAACTCCTAACTAGCCTCATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTCGGACTCACGGATGAGGGTATGAACTCCTAACTAGCCTCATT  1046

seq1  TTTCCATCAGACCACTGAGCTCAGTAACACCCATCATCCTTACCCTCCTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCAGACCACTGAGCTCAGTAACACCCATCATCCTTACCCTCCTA  1096

seq1  GTGAATTC  1106
      ||||||||
seq2  GTGAATTC  1104