BAC Information

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BAC

Clone NameB6Ng01-186E11
Chromosome7 (Build37)
Map Location 69,491,352 - 69,626,922
singlet/doubletdoublet
Overlap geneNdn, Magel2, Mkrn3, Peg12, Atp5l-ps1
Upstream geneB230209E15Rik, EG620934, LOC100041293
Downstream geneEG665038, LOC669222, LOC384631, LOC622243, EG622251, Chrna7, Otud7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186E11.bB6Ng01-186E11.g
ACCGA011164GA011165
length1,2081,187
definitionB6Ng01-186E11.b B6Ng01-186E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,491,352 - 69,492,561)(69,625,736 - 69,626,922)
sequence
gaattcaactatatagctcatcttattcagtagctgatgcccaggtagct
ctctggtcccatctctggtatcctccctgaacaaaaaacaacttcaagat
tgtcagccccatacttgtgacttgttttcatgaatccattgagtacaaga
tggtaaatacactgtatatataaacatagtgatctagtgcagaaaattct
tcaaactcaacccacttgcagaaaaacagttccaattaatgagcatcaga
gaactagagcacttttagcccaaacacataaaatctcaaatatatacaat
ctgaaactttttccaggatatgcaggatgtcacaagtgaaaaattccaca
tcagagctcgcggagtagatcacaactgagagaaagtgttgccttcaaaa
atgtcaataagaagcaaactaataacacgtctaggctggagtttaaaaca
agttattgtacatgtgcaaatattctcaaatctggaaaactctgaatcgc
ttcttgccataactattctgggtaaaagatagctgttatatctaaacaaa
catattttagaacctaggaatgccaacatgatatcttaaatctgtccgct
ttaagtgatgagaagggctaaggaattccattatttcagaacaagaaaga
tgatcaaatctaaggacttctggctttggaagcttcaacaatggtcattg
tataaaggagagtttgaggaaatatcagctttagatgacctctcgatcta
cctttttatttttggacaccaatatgttgcatcttattcatgagagactg
ttaggtatcgaaaagagctgcatttaaaatatattgggaaagatttggat
gtgctcccaacatggaattagtcatttgtgaatgacataatttaagaagt
agaagatttcttataaacgcagaagatgcagtgagcagggcaaaaaggta
gtgggaaatatgaaaaaatacactgtcataaaatgtgtattaataatatg
ttgatcattttccactagaatcttaacggagcttagatgaaacaaagtga
cctatagaatggagagcccaaatcttatagttatttaaaataattcaaac
tacaaactgagcatcccatggagtgaattgatgcattaataatatattta
ataattccctcattcatgtggggccctggggggaattaaattctggtcct
catcgctt

gaattcatgcccactggaccaaatctagtttacaaggtttcagtagcagc
cttttaaggtcccaagacgggggagatatatgctgatctactctcagtca
tcctcaggtttatatggtaggaagaccttttagaaatgaatgccagacaa
agaataagaagaatgaattaattaataaagcatgcaagcaggatgacaag
ggctaaatacacttgatcaactaataaactgaaattatggctaggtgtgc
atccagggtaacttctccacagagattcagcaggccttactctctgctgg
ctgctatgagcaggttcacttatatgcacttcagtcctgggaccattaga
gacctcttccctgaccttcctaaaacaaaacaaactgaaactttccagat
ttcatcctaggagtacaagacaggagagataggaaaataaaagaaaatgc
agcaaaagagatgttcctaagcaatcttatctgggaagaaatgaccctcg
gtgacaggaacaaaagctgagcattaagacaaataaattttggttgtcca
agacattaggactgcctcatggtagacctcctctctccctcaagcctctg
tgggtgcaacatggtccaattgaaagtgttttaatgtgcagagatgagac
actggaaaagaatttttaaaaaatcacccatctgcctttatacttcataa
atccatctttccccactgaaggaaaggctttcattggaaatataactaaa
actaaatttgataaagaaggcaaaaatccaacacttttaatctcctttca
gggcaactctcagcttcaccagtaagagcaaaacccacaagcccactggg
tcgttaatatatgggagaaatttcaccataaactttcaataaaattgaca
ataatttttaaatacctaagagaaacactgagagatgataccaccgctga
ggtgagcttaggttcttcacactggacagtcctaccaagggcctcaactg
aaaatagaatctgtcctcctcccagcatttatactcaggattttttataa
tgggagacccagattgaggaatgtgactggctagtcaccttaggccttca
ctggtcataactgctgggtagagaaaatctggaagactcaagttgccctt
gcctagtgaaaaagagtgagaatgtccctctccaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_69491352_69492561
seq2: B6Ng01-186E11.b_45_1252

seq1  GAATTCAACTATATAGCTCATCTTATTCAGTAGCTGATGCCCAGGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTATATAGCTCATCTTATTCAGTAGCTGATGCCCAGGTAGCT  50

seq1  CTCTGGTCCCATCTCTGGTATCCTCCCTGAACAAAAAACAACTTCAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCCCATCTCTGGTATCCTCCCTGAACAAAAAACAACTTCAAGAT  100

seq1  TGTCAGCCCCATACTTGTGACTTGTTTTCATGAATCCATTGAGTACAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCCCATACTTGTGACTTGTTTTCATGAATCCATTGAGTACAAGA  150

seq1  TGGTAAATACACTGTATATATAAACATAGTGATCTAGTGCAGAAAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATACACTGTATATATAAACATAGTGATCTAGTGCAGAAAATTCT  200

seq1  TCAAACTCAACCCACTTGCAGAAAAACAGTTCCAATTAATGAGCATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCAACCCACTTGCAGAAAAACAGTTCCAATTAATGAGCATCAGA  250

seq1  GAACTAGAGCACTTTTAGCCCAAACACATAAAATCTCAAATATATACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGAGCACTTTTAGCCCAAACACATAAAATCTCAAATATATACAAT  300

seq1  CTGAAACTTTTTCCAGGATATGCAGGATGTCACAAGTGAAAAATTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTTTTCCAGGATATGCAGGATGTCACAAGTGAAAAATTCCACA  350

seq1  TCAGAGCTCGCGGAGTAGATCACAACTGAGAGAAAGTGTTGCCTTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTCGCGGAGTAGATCACAACTGAGAGAAAGTGTTGCCTTCAAAA  400

seq1  ATGTCAATAAGAAGCAAACTAATAACACGTCTAGGCTGGAGTTTAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAATAAGAAGCAAACTAATAACACGTCTAGGCTGGAGTTTAAAACA  450

seq1  AGTTATTGTACATGTGCAAATATTCTCAAATCTGGAAAACTCTGAATCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGTACATGTGCAAATATTCTCAAATCTGGAAAACTCTGAATCGC  500

seq1  TTCTTGCCATAACTATTCTGGGTAAAAGATAGCTGTTATATCTAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCATAACTATTCTGGGTAAAAGATAGCTGTTATATCTAAACAAA  550

seq1  CATATTTTAGAACCTAGGAATGCCAACATGATATCTTAAATCTGTCCGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTAGAACCTAGGAATGCCAACATGATATCTTAAATCTGTCCGCT  600

seq1  TTAAGTGATGAGAAGGGCTAAGGAATTCCATTATTTCAGAACAAGAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGATGAGAAGGGCTAAGGAATTCCATTATTTCAGAACAAGAAAGA  650

seq1  TGATCAAATCTAAGGACTTCTGGCTTTGGAAGCTTCAACAATGGTCATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAATCTAAGGACTTCTGGCTTTGGAAGCTTCAACAATGGTCATTG  700

seq1  TATAAAGGAGAGTTTGAGGAAATATCAGCTTTAGATGACCTCTCGATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGGAGAGTTTGAGGAAATATCAGCTTTAGATGACCTCTCGATCTA  750

seq1  CCTTTTTATTTTTGGACACCAATATGTTGCATCTTATTCATGAGAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTATTTTTGGACACCAATATGTTGCATCTTATTCATGAGAGACTG  800

seq1  TTAGGTATCGAAAAGAGCTGCATTTAAAATATATTGGGAAAGATTTGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATCGAAAAGAGCTGCATTTAAAATATATTGGGAAAGATTTGGAT  850

seq1  GTGCTCCCAACATGGAATTAGTCATTTGTGAATGACATAATTTAAGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCCAACATGGAATTAGTCATTTGTGAATGACATAATTTAAGAAGT  900

seq1  AGAAGATTTCTTATAAACGCAGAAGATGCAGTGAGCAGGGCAAAAAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTTCTTATAAACGCAGAAGATGCAGTGAGCAGGGCAAAAAGGTA  950

seq1  GTGGGAAAATATG-AAAAATACACTGTCATAAAATGTGTATTAATAAATA  999
      ||||| ||||||| ||||||||||||||||||||||||||||||| ||||
seq2  GTGGG-AAATATGAAAAAATACACTGTCATAAAATGTGTATTAAT-AATA  998

seq1  TGTTGATCATTTTCCACTAGAATCTTAACGGAAGCTTTAGATGAAAACAA  1049
      ||||||||||||||||||||||||||||||| ||| ||||||| ||||||
seq2  TGTTGATCATTTTCCACTAGAATCTTAACGG-AGC-TTAGATG-AAACAA  1045

seq1  AGTGACCTAATAGAAATGGAGAGCCCAAATC-TATAGTTA-TTAAAATAA  1097
      |||||||| |||| ||||||||||||||||| |||||||| |||||||||
seq2  AGTGACCT-ATAG-AATGGAGAGCCCAAATCTTATAGTTATTTAAAATAA  1093

seq1  TTCAAAACCAACAAACTGAGCATCCAATG--ATGAATGAATGCATATAT-  1144
      ||||||  | ||||||||||||||| |||   |||||  ||||||  || 
seq2  TTCAAA--CTACAAACTGAGCATCCCATGGAGTGAATTGATGCATTAATA  1141

seq1  ATATATTTTATATATCCCTCATTTTCATGTGGGGCC--TGGGGGATTTAA  1192
      |||||||| |||  |||||||  |||||||||||||   |||||| ||||
seq2  ATATATTTAATAATTCCCTCA--TTCATGTGGGGCCCTGGGGGGAATTAA  1189

seq1  ATTCTGGTTCTCAT-GCTT  1210
      |||||||| ||||| ||||
seq2  ATTCTGGTCCTCATCGCTT  1208


seq1: chr7_69625736_69626922
seq2: B6Ng01-186E11.g_66_1252 (reverse)

seq1  ATTTGGA----GGCATTCTCACTCTTCTCCACTA-GCAAGGGCAACTTTG  45
      |||||||    | ||||||||||||| | ||||| |||||||||||||  
seq2  ATTTGGAGAGGGACATTCTCACTCTTTTTCACTAGGCAAGGGCAACTT--  48

seq1  AAGTCTTCTCAGA-TATCTCTACCCAGCAAGGTAATGACCAGGTGAAAGG  94
       ||||||| |||| | |||||||||||||  || ||||||| ||||| | 
seq2  GAGTCTTC-CAGATTTTCTCTACCCAGCA--GTTATGACCA-GTGAAGGC  94

seq1  CT-AGGTGACTAG-CAGTCACATTTCTTCCATCTGGGTTCTCCCATTTAT  142
      || |||||||||| |||||||| ||| || ||||||| |||||||||   
seq2  CTAAGGTGACTAGCCAGTCACA-TTCCTCAATCTGGG-TCTCCCATTATA  142

seq1  AAAAATCTTGAGTAATAAATGCTTGGGAGAGACCAGATTCTATTTTCAGT  192
      ||||||| ||||| ||||||||| ||  |||  |||||||||||||||||
seq2  AAAAATCCTGAGT-ATAAATGCTGGGAGGAGGACAGATTCTATTTTCAGT  191

seq1  TGAGGCCC-TGGTAGGACTGTCCAGTGTGAAGAACCTAAGCTCACCTCAG  241
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCTTGGTAGGACTGTCCAGTGTGAAGAACCTAAGCTCACCTCAG  241

seq1  C-GTGGTATCATCTCTCAGTGTTTCTCTTAGGTATTTAAAAATTATTGTC  290
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTATCATCTCTCAGTGTTTCTCTTAGGTATTTAAAAATTATTGTC  291

seq1  AATTTTTATTGAAAGTTTATGGTGAAATTTCTCCCATATATTAACGACCC  340
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTTTATTGAAAGTTTATGGTGAAATTTCTCCCATATATTAACGACCC  340

seq1  AGTGGGCTTGTGGGTTTTGCTCTTACTGGTGAAGCTGAGAGTTGCCCTGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCTTGTGGGTTTTGCTCTTACTGGTGAAGCTGAGAGTTGCCCTGA  390

seq1  AAGGAGATTAAAAGTGTTGGATTTTTGCCTTCTTTATCAAATTTAGTTTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATTAAAAGTGTTGGATTTTTGCCTTCTTTATCAAATTTAGTTTT  440

seq1  AGTTATATTTCCAATGAAAGCCTTTCCTTCAGTGGGGAAAGATGGATTTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATTTCCAATGAAAGCCTTTCCTTCAGTGGGGAAAGATGGATTTA  490

seq1  TGAAGTATAAAGGCAGATGGGTGATTTTTTAAAAATTCTTTTCCAGTGTC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATAAAGGCAGATGGGTGATTTTTTAAAAATTCTTTTCCAGTGTC  540

seq1  TCATCTCTGCACATTAAAACACTTTCAATTGGACCATGTTGCACCCACAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGCACATTAAAACACTTTCAATTGGACCATGTTGCACCCACAG  590

seq1  AGGCTTGAGGGAGAGAGGAGGTCTACCATGAGGCAGTCCTAATGTCTTGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGAGGGAGAGAGGAGGTCTACCATGAGGCAGTCCTAATGTCTTGG  640

seq1  ACAACCAAAATTTATTTGTCTTAATGCTCAGCTTTTGTTCCTGTCACCGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAAAATTTATTTGTCTTAATGCTCAGCTTTTGTTCCTGTCACCGA  690

seq1  GGGTCATTTCTTCCCAGATAAGATTGCTTAGGAACATCTCTTTTGCTGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATTTCTTCCCAGATAAGATTGCTTAGGAACATCTCTTTTGCTGCA  740

seq1  TTTTCTTTTATTTTCCTATCTCTCCTGTCTTGTACTCCTAGGATGAAATC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTATTTTCCTATCTCTCCTGTCTTGTACTCCTAGGATGAAATC  790

seq1  TGGAAAGTTTCAGTTTGTTTTGTTTTAGGAAGGTCAGGGAAGAGGTCTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTTTCAGTTTGTTTTGTTTTAGGAAGGTCAGGGAAGAGGTCTCT  840

seq1  AATGGTCCCAGGACTGAAGTGCATATAAGTGAACCTGCTCATAGCAGCCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCCCAGGACTGAAGTGCATATAAGTGAACCTGCTCATAGCAGCCA  890

seq1  GCAGAGAGTAAGGCCTGCTGAATCTCTGTGGAGAAGTTACCCTGGATGCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGTAAGGCCTGCTGAATCTCTGTGGAGAAGTTACCCTGGATGCA  940

seq1  CACCTAGCCATAATTTCAGTTTATTAGTTGATCAAGTGTATTTAGCCCTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCCATAATTTCAGTTTATTAGTTGATCAAGTGTATTTAGCCCTT  990

seq1  GTCATCCTGCTTGCATGCTTTATTAATTAATTCATTCTTCTTATTCTTTG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTGCTTGCATGCTTTATTAATTAATTCATTCTTCTTATTCTTTG  1040

seq1  TCTGGCATTCATTTCTAAAAGGTCTTCCTACCATATAAACCTGAGGATGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATTCATTTCTAAAAGGTCTTCCTACCATATAAACCTGAGGATGA  1090

seq1  CTGAGAGTAGATCAGCATATATCTCCCCCGTCTTGGGACCTTAAAAGGCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTAGATCAGCATATATCTCCCCCGTCTTGGGACCTTAAAAGGCT  1140

seq1  GCTACTGAAACCTTGTAAACTAGATTTGGTCCAGTGGGCATGAATTC  1187
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGAAACCTTGTAAACTAGATTTGGTCCAGTGGGCATGAATTC  1187


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