BAC Information

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BAC

Clone NameB6Ng01-187F15
Chromosome7 (Build37)
Map Location 17,297,091 - 17,485,845
singlet/doubletdoublet
Overlap geneLOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8
Upstream geneObox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641
Downstream genePtgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3, Psg29, LOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187F15.bB6Ng01-187F15.g
ACCGA011953GA011954
length1,165334
definitionB6Ng01-187F15.b B6Ng01-187F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,484,681 - 17,485,845)(17,297,091 - 17,297,442)
sequence
gaattcagtgaatgtacagataactagataaatctgacccccgcccccgg
gttttgtttgtttgtttgagatggtgtcctttcctgggacctagggttta
cagatttagctagattgcctaaccagtgagtgtcagccgcctgatctctg
cctccccagcagtgagattacaactgagtttcaccattcccagcttgtta
cattgttgctagggttttaactgaggctcctatgacaagcacctgactgc
cagagccaccacactagcccctccctagtttcaatggaaacaacatttcc
cttttcattccactgtcagaagtccctaagcagcccccagggtgaatggc
aactctgattccttagcctactgttttgtagctgttcctccaaccaaaaa
ttttctcctctggagggaaaagggaggcacctaagacagaaaaaacaaag
gaactgtcaaggcctaggaagcttagaaagtcagagtccatatgcacaca
cacatgtgtatatgtgcactggcactgacacaagcattgtgtacacaagg
acatgcaaaaacatctttgcatacctgtactcatacatgcacgtacaatg
tgcaaacaagtaactatgtgcacatgatcattcatacacactcaacccag
gcacaacacacagaacccagacaccacacacacgtgtgcaggcacacaca
cacacacaaactaggggaaaataatttatctatttggccatacgctcact
gaatttaaaaccacccattctgtcctcagactcccgtagcccctttcgaa
gcagtaaacagtagctgtggaagaagacactctttctgtagatctagaag
ctccagggatactgtttttctgcagcattaactatgccatggtgggcttt
gcagtgacgtggctgcctttgagtcaccaatgttctgtaagtgacctcag
taaactaattgggtcccgagctagatcccgggtagattcatttcttatgt
ctggtcacctgaataaacaattatttgctcaatgtgtgcctcctaagaaa
gttacacacatgatgttacatgcacggctgggacattgccatctgggaag
ccagaagcccttaataaaatccaagtaaggccaggccgttgcatatccca
gccattccagagggc
actcctcttgaggcaagtagaccttgggataaagaatttagcattatcat
acatagcaacaaaccaaacctcagcattttggtgtgttgataaatatgtg
tgtgatttatgatttattgtttattattttagtcaatcctggcagagcct
gcctttaatctcagcgcgtggaaggcagaaggaagcaggtggatcactgt
aagtttgaccctagcctgatctacgtagtgagttccaggtcaaccagacc
ctgtcgaaagagaaagagagagagagagagagagagagagagagagagag
agagagagagagaagaaggaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_17484681_17485845
seq2: B6Ng01-187F15.b_49_1213 (reverse)

seq1  GCCCTCT-GAAT-GCTGGGATATGCCAACACGCCTGGCCTTCCCTGCGAT  48
      ||||||| |||| ||||||||||| ||||  |||||||||| | || |||
seq2  GCCCTCTGGAATGGCTGGGATATG-CAAC-GGCCTGGCCTTACTTG-GAT  47

seq1  TTTAT--AAGGCTTCTGGGCTTTCCAGATGGGCAATGTCCCCACCGTGCC  96
      |||||  | ||||||| ||||| |||||| |||||||||||  ||||| |
seq2  TTTATTAAGGGCTTCT-GGCTTCCCAGAT-GGCAATGTCCCAGCCGTG-C  94

seq1  CTGTTACATCCCTGTTGTGTAACTTTCTTAGGAGGCACACA-TGAGCAAT  145
       ||| |||| | || |||||||||||||||||||||||||| ||||||| 
seq2  ATGTAACAT-CATG-TGTGTAACTTTCTTAGGAGGCACACATTGAGCAAA  142

seq1  TATTTGTTTA-TCAGGTGA-CAGACATAAGAAATGATTCTACCC-GGATC  192
      || ||||||| |||||||| |||||||||||||||| ||||||| |||||
seq2  TAATTGTTTATTCAGGTGACCAGACATAAGAAATGAATCTACCCGGGATC  192

seq1  TAGCTCGGGACCCAATTAGTTTACTGAGGTCACTTACAGGAACATTGGTG  242
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGCTCGGGACCCAATTAGTTTACTGAGGTCACTTACA-GAACATTGGTG  241

seq1  ACTCAAAGGCAGCCACGTCACTGCAAAGCCCACCATGGCATAGTTAATGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGGCAGCCACGTCACTGCAAAGCCCACCATGGCATAGTTAATGC  291

seq1  TGCAGGAAAACAGTATCCCTGGAGCTTCTAGATCTACAG-AAGAGTGTCT  341
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCAGAAAAACAGTATCCCTGGAGCTTCTAGATCTACAGAAAGAGTGTCT  341

seq1  TCTTCCACAGCTACTGTTTACTGCTTCGAAAGGGGCTACGGGAGTCTGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACAGCTACTGTTTACTGCTTCGAAAGGGGCTACGGGAGTCTGAG  391

seq1  GACAGAATGGGTGGTTTTAAATTCAGTGAGCGTATGGCCAAATAGATAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATGGGTGGTTTTAAATTCAGTGAGCGTATGGCCAAATAGATAAA  441

seq1  TTATTTTCCCCTAGTTTGTGTGTGTGTGTGTGCCTGCACACGTGTGTGTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCCCCTAGTTTGTGTGTGTGTGTGTGCCTGCACACGTGTGTGTG  491

seq1  GTGTCTGGGTTCTGTGTGTTGTGCCTGGGTTGAGTGTGTATGAATGATCA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGGTTCTGTGTGTTGTGCCTGGGTTGAGTGTGTATGAATGATCA  541

seq1  TGTGCACATAGTTACTTGTTTGCACATTGTACGTGCATGTATGAGTACAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATAGTTACTTGTTTGCACATTGTACGTGCATGTATGAGTACAG  591

seq1  GTATGCAAAGATGTTTTTGCATGTCCTTGTGTACACAATGCTTGTGTCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAAGATGTTTTTGCATGTCCTTGTGTACACAATGCTTGTGTCAG  641

seq1  TGCCAGTGCACATATACACATGTGTGTGTGCATATGGACTCTGACTTTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGCACATATACACATGTGTGTGTGCATATGGACTCTGACTTTCT  691

seq1  AAGCTTCCTAGGCCTTGACAGTTCCTTTGTTTTTTCTGTCTTAGGTGCCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTAGGCCTTGACAGTTCCTTTGTTTTTTCTGTCTTAGGTGCCT  741

seq1  CCCTTTTCCCTCCAGAGGAGAAAATTTTTGGTTGGAGGAACAGCTACAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCCCTCCAGAGGAGAAAATTTTTGGTTGGAGGAACAGCTACAAA  791

seq1  ACAGTAGGCTAAGGAATCAGAGTTGCCATTCACCCTGGGGGCTGCTTAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGGCTAAGGAATCAGAGTTGCCATTCACCCTGGGGGCTGCTTAGG  841

seq1  GACTTCTGACAGTGGAATGAAAAGGGAAATGTTGTTTCCATTGAAACTAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGACAGTGGAATGAAAAGGGAAATGTTGTTTCCATTGAAACTAG  891

seq1  GGAGGGGCTAGTGTGGTGGCTCTGGCAGTCAGGTGCTTGTCATAGGAGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCTAGTGTGGTGGCTCTGGCAGTCAGGTGCTTGTCATAGGAGCC  941

seq1  TCAGTTAAAACCCTAGCAACAATGTAACAAGCTGGGAATGGTGAAACTCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAAAACCCTAGCAACAATGTAACAAGCTGGGAATGGTGAAACTCA  991

seq1  GTTGTAATCTCACTGCTGGGGAGGCAGAGATCAGGCGGCTGACACTCACT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAATCTCACTGCTGGGGAGGCAGAGATCAGGCGGCTGACACTCACT  1041

seq1  GGTTAGGCAATCTAGCTAAATCTGTAAACCCTAGGTCCCAGGAAAGGACA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGCAATCTAGCTAAATCTGTAAACCCTAGGTCCCAGGAAAGGACA  1091

seq1  CCATCTCAAACAAACAAACAAAACCCGGGGGCGGGGGTCAGATTTATCTA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAAACAAACAAACAAAACCCGGGGGCGGGGGTCAGATTTATCTA  1141

seq1  GTTATCTGTACATTCACTGAATTC  1165
      ||||||||||||||||||||||||
seq2  GTTATCTGTACATTCACTGAATTC  1165

seq1: chr7_17297091_17297442
seq2: B6Ng01-187F15.g_69_402

seq1  ACTCCTCTTGAGGCAAGTAGACCTTGGGATAAAGAATTTAGCATTATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCTTGAGGCAAGTAGACCTTGGGATAAAGAATTTAGCATTATCAT  50

seq1  ACATAGCAACAAACCAAACCTCAGCATTTTGGTGTGTTGATAAATATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAACAAACCAAACCTCAGCATTTTGGTGTGTTGATAAATATGTG  100

seq1  TGTGATTTATGATTTATTGTTTATTATTTTAGTCAATCCTGGCAGAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTATGATTTATTGTTTATTATTTTAGTCAATCCTGGCAGAGCCT  150

seq1  GCCTTTAATCTCAGCGCGTGGAAGGCAGAAGGAAGCAGGTGGATCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCTCAGCGCGTGGAAGGCAGAAGGAAGCAGGTGGATCACTGT  200

seq1  AAGTTTGACCCTAGCCTGATCTACGTAGTGAGTTCCAGGTCAACCAGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGACCCTAGCCTGATCTACGTAGTGAGTTCCAGGTCAACCAGACC  250

seq1  CTGTCGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||                  ||||||||||||||||||
seq2  CTGTCGAAAGAGAA------------------AGAGAGAGAGAGAGAGAG  282

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGGAGGAGGAGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGGAGGAGGAGGAGGA  332

seq1  GG  352
      ||
seq2  GG  334