BAC Information

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BAC

Clone NameB6Ng01-187I10
Chromosome7 (Build37)
Map Location 88,970,660 - 89,105,191
singlet/doubletdoublet
Overlap geneBtbd1, Tm6sf1, LOC100043161, Hdgfrp3
Upstream geneLOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a, EG636544, Rps17, Cpeb1, LOC623355, Ap3b2, BC048679, Fsd2, Whdc1, Homer2, 2610204K14Rik, 3110040N11Rik
Downstream geneBnc1, Sh3gl3, Adamtsl3, 1700129I04Rik, Eftud1, LOC100038986, LOC619808, Rkhd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187I10.bB6Ng01-187I10.g
ACCGA012083GA012084
length1,016976
definitionB6Ng01-187I10.b B6Ng01-187I10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,970,660 - 88,971,672)(89,104,220 - 89,105,191)
sequence
gaattcactttacccaaccctcagtaccatttaacagctaaccatgttct
atagctgtcaaagttttccactctcatttcccaaattctctctttgactt
gcctctcaggatgcccggctgccttcctttctcatctctctgacagccgc
ctagtttgcttatcgctccctttcccttcctccagctctatgcaggccct
tgcaggtctcaggcaccctgtacctttcacagtccactactttcccacgt
taacgctgttctaacttcctgcagctccttggcatctcctatctaaatag
agcacaacaaaacctcttaatgtatatgttacttggaggttccagttcct
ccagcaacaggcaggtgaggattgtaaatgcgaatagggtctcatcactc
cactgaaaaccctgttttctctcaagccttcttcctcagtcccccaaatc
cctgcccggcctatctctttaatcactatcacccatcgctttctttttat
ctactcaaacctcgatagtttactcttgtagtttctctggcagaagagat
taaggcctaaaacacgcccccacccccttaaaaagttttctctggtatta
tttccttccaaaccctgtcagcctggacagtgtccactgccgactcctac
actgagaaataagctacgcagggagacacagtgtacgtcaaatgaactag
aacaccatttgtaagtgagagggctttaagtaagcagattattaaagtgt
aaaacctaagttcagaagcctcgacgtaatggtagttaatttaggttgta
aaaacagtaaaaatctgcctcagccacctcacttttccagtttagcaagc
tccaccattgttgtcacacaatgttttaaggataatcaatgcctaagtaa
aaattagtctagacatgcagttcagaatagaaaaatgaccaggaccctga
ctatcaggaaaataattttacttagagagcaggaaatcaaatggcactgt
atattttcaagggctc
gaattcaccctcggtgccttcctctttcttccttcttactagggtctttc
cttccccccaatctcacttctaatttcttacatgtatgtaaaatattatt
tgatatttctactttcatgtttatatatgtaaagagtgtgtgtgtgtatg
tctagatgtctgtgagtgtgtatgtttatgcatctatataaaatctagga
ttcacaagtgagagaaaacatgtaaaatctgcctctataagtctaagtgt
gaattttctctaatcataatcatagtactttatctttacagaagggctgg
aataccgaggtcaaggggaaaagttataaagatacactgtggctttccaa
tcaaagctgctggctatttagattattagggaggagtgccctctgccgga
atttatgggttattgcaataggcactgtgtgctactctggagtcctccgg
atttaggaatgtaattggaaagtttcctgagtctgccatccttgccctcc
agttctaagcacagctgagaaaggacctgttccctgcacagtccctctca
caggagttaagtgccttagatagaactttaatccagtgttccagacaaca
cagctttgtcatttccttggtgaaacaaaagcagaatggggaagtctgtg
ttgtcaggaacctatcctgtttcctgccctgacccctggcatcaccttcc
acctcagcacacctggctgtaagacctttaaacatcaactctggagttcc
catctccttatctgtgacgtggtggccccatagtgcacgttgaggtgttc
tgggggaacctcagaaatgcctcgcgtggcattattgaaaggacagcgaa
gagaatgtagagagaagctactgtgctggagctcactctacttcatgaga
tggactttactcgatttccatccaattgcgggttttagggactcgggaat
ttttccttgggttgggggggttgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_88970660_88971672
seq2: B6Ng01-187I10.b_46_1061

seq1  GAATTCACTTTACCCAACCCTCAGTACCATTTAACAGCTAACCATGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTACCCAACCCTCAGTACCATTTAACAGCTAACCATGTTCT  50

seq1  ATAGCTGTCAAAGTTTTCCACTCTCATTTCCCAAATTCTCTCTTTGACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTCAAAGTTTTCCACTCTCATTTCCCAAATTCTCTCTTTGACTT  100

seq1  GCCTCTCAGGATGCCCGGCTGCCTTCCTTTCTCATCTCTCTGACAGCCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCAGGATGCCCGGCTGCCTTCCTTTCTCATCTCTCTGACAGCCGC  150

seq1  CTAGTTTGCTTATCGCTCCCTTTCCCTTCCTCCAGCTCTATGCAGGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGCTTATCGCTCCCTTTCCCTTCCTCCAGCTCTATGCAGGCCCT  200

seq1  TGCAGGTCTCAGGCACCCTGTACCTTTCACAGTCCACTACTTTCCCACGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTCTCAGGCACCCTGTACCTTTCACAGTCCACTACTTTCCCACGT  250

seq1  TAACGCTGTTCTAACTTCCTGCAGCTCCTTGGCATCTCCTATCTAAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCTGTTCTAACTTCCTGCAGCTCCTTGGCATCTCCTATCTAAATAG  300

seq1  AGCACAACAAAACCTCTTAATGTATATGTTACTTGGAGGTTCCAGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAACAAAACCTCTTAATGTATATGTTACTTGGAGGTTCCAGTTCCT  350

seq1  CCAGCAACAGGCAGGTGAGGATTGTAAATGCGAATAGGGTCTCATCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACAGGCAGGTGAGGATTGTAAATGCGAATAGGGTCTCATCACTC  400

seq1  CACTGAAAACCCTGTTTTCTCTCAAGCCTTCTTCCTCAGTCCCCCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAACCCTGTTTTCTCTCAAGCCTTCTTCCTCAGTCCCCCAAATC  450

seq1  CCTGCCCGGCCTATCTCTTTAATCACTATCACCCATCGCTTTCTTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCGGCCTATCTCTTTAATCACTATCACCCATCGCTTTCTTTTTAT  500

seq1  CTACTCAAACCTCGATAGTTTACTCTTGTAGTTTCTCTGGCAGAAGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAAACCTCGATAGTTTACTCTTGTAGTTTCTCTGGCAGAAGAGAT  550

seq1  TAAGGCCTAAAACACGCCCCCACCCCCTTAAAAAGTTTTCTCTGGTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTAAAACACGCCCCCACCCCCTTAAAAAGTTTTCTCTGGTATTA  600

seq1  TTTCCTTCCAAACCCTGTCAGCCTGGACAGTGTCCACTGCCGACTCCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTCCAAACCCTGTCAGCCTGGACAGTGTCCACTGCCGACTCCTAC  650

seq1  ACTGAGAAATAAGCTACGCAGGGAGACACAGTGTACGTCAAATGAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAAATAAGCTACGCAGGGAGACACAGTGTACGTCAAATGAACTAG  700

seq1  AACACCATTTGTAAGTGAGAGGGCTTTAAGTAAGCAGATTATTAAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATTTGTAAGTGAGAGGGCTTTAAGTAAGCAGATTATTAAAGTGT  750

seq1  AAAACCTAAGTTCAGAAGCCTCGACGTAATGGTAGTTAATTTAGGTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAAGTTCAGAAGCCTCGACGTAATGGTAGTTAATTTAGGTTGTA  800

seq1  AAAACAGTAAAAATCTGCCTCAGCCACCTCACTTTTCCAGTTTAGCAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTAAAAATCTGCCTCAGCCACCTCACTTTTCCAGTTTAGCAAGC  850

seq1  TCCACCATTGTTGTCACACAATGTTTTAAAGATAATCAATGCCTAAGTAA  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCCACCATTGTTGTCACACAATGTTTTAAGGATAATCAATGCCTAAGTAA  900

seq1  AAATTAGTCTAGACATGCAGTTCAGAATAGAAAAATGACCAGGA-CCTGA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAATTAGTCTAGACATGCAGTTCAGAATAGAAAAATGACCAGGACCCTGA  950

seq1  CTATCAGGAAAATAA-TTTACTTAGAGAGCAAGAAATCAAATGGCACTGT  998
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CTATCAGGAAAATAATTTTACTTAGAGAGCAGGAAATCAAATGGCACTGT  1000

seq1  ATA-TTTCAAGGGCTC  1013
      ||| ||||||||||||
seq2  ATATTTTCAAGGGCTC  1016

seq1: chr7_89104220_89105191
seq2: B6Ng01-187I10.g_64_1039 (reverse)

seq1  CATCAACCCCCCCAACCCAAGGAAAAA-TCCCGAGTCCCTAAAA-CCGCA  48
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  CATCAACCCCCCCAACCCAAGGAAAAATTCCCGAGTCCCTAAAACCCGCA  50

seq1  ATTGGATGGAAATCGAGTAAAGTCCATCTCATGAAGTAGAGTGAGCTCCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGAAATCGAGTAAAGTCCATCTCATGAAGTAGAGTGAGCTCCA  100

seq1  GCACAGTAGCTTCTCTCTACATTCTCTTCGCTGTCC-TTCAATAATGCCA  147
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GCACAGTAGCTTCTCTCTACATTCTCTTCGCTGTCCTTTCAATAATGCCA  150

seq1  CGCGAGGCATTTCTGAGGTTCCCCCAGAACACCTCAACGTGCACTATGGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGAGGCATTTCTGAGGTTCCCCCAGAACACCTCAACGTGCACTATGGG  200

seq1  GCCACCACGTCACAGATAAGGAGATGGGAACTCCAGAGTTGATGTTT-AA  246
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCACCACGTCACAGATAAGGAGATGGGAACTCCAGAGTTGATGTTTAAA  250

seq1  GGTCTTACAGCCAGGTGTGCTGAGGTGGAAGGTGATGCCAGGGGTCAGGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTACAGCCAGGTGTGCTGAGGTGGAAGGTGATGCCAGGGGTCAGGG  300

seq1  CAGGAAACAGGATAGGTTCCTGACAACACAGACTTCCCCATTCTGCTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACAGGATAGGTTCCTGACAACACAGACTTCCCCATTCTGCTTTT  350

seq1  GTTTCACCAAGGAAATGACAAAGCTGTGTTGTCTGGAACACTGGATTAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACCAAGGAAATGACAAAGCTGTGTTGTCTGGAACACTGGATTAAA  400

seq1  GTTCTATCTAAGGCACTTAACTCCTGTGAGAGGGACTGTGCAGGGAACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCTAAGGCACTTAACTCCTGTGAGAGGGACTGTGCAGGGAACAG  450

seq1  GTCCTTTCTCAGCTGTGCTTAGAACTGGAGGGCAAGGATGGCAGACTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCTCAGCTGTGCTTAGAACTGGAGGGCAAGGATGGCAGACTCAG  500

seq1  GAAACTTTCCAATTACATTCCTAAATCCGGAGGACTCCAGAGTAGCACAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTCCAATTACATTCCTAAATCCGGAGGACTCCAGAGTAGCACAC  550

seq1  AGTGCCTATTGCAATAACCCATAAATTCCGGCAGAGGGCACTCCTCCCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTATTGCAATAACCCATAAATTCCGGCAGAGGGCACTCCTCCCTA  600

seq1  ATAATCTAAATAGCCAGCAGCTTTGATTGGAAAGCCACAGTGTATCTTTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTAAATAGCCAGCAGCTTTGATTGGAAAGCCACAGTGTATCTTTA  650

seq1  TAACTTTTCCCCTTGACCTCGGTATTCCAGCCCTTCTGTAAAGATAAAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTTCCCCTTGACCTCGGTATTCCAGCCCTTCTGTAAAGATAAAGT  700

seq1  ACTATGATTATGATTAGAGAAAATTCACACTTAGACTTATAGAGGCAGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATTATGATTAGAGAAAATTCACACTTAGACTTATAGAGGCAGAT  750

seq1  TTTACATGTTTTCTCTCACTTGTGAATCCTAGATTTTATATAGATGCATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATGTTTTCTCTCACTTGTGAATCCTAGATTTTATATAGATGCATA  800

seq1  AACATACACACTCACAGACATCTAGACATACACACACACACTCTTTACAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACACACTCACAGACATCTAGACATACACACACACACTCTTTACAT  850

seq1  ATATAAACATGAAAGTAGAAATATCAAATAATATTTTACATACATGTAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAACATGAAAGTAGAAATATCAAATAATATTTTACATACATGTAAG  900

seq1  AAATTAGAAGTGAGATTGGGGGGAAGGAAAGACCCTAGTAAGAAGGAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAAGTGAGATTGGGGGGAAGGAAAGACCCTAGTAAGAAGGAAGA  950

seq1  AAGAGGAAGGCACCGAGGGTGAATTC  972
      ||||||||||||||||||||||||||
seq2  AAGAGGAAGGCACCGAGGGTGAATTC  976