BAC Information

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BAC

Clone NameB6Ng01-187L16
Chromosome7 (Build37)
Map Location 18,878,689 - 19,018,289
singlet/doubletdoublet
Overlap genePsg18, LOC546936, Psg28
Upstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1
Downstream geneLOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187L16.bB6Ng01-187L16.g
ACCGA012226GA012227
length1,130986
definitionB6Ng01-187L16.b B6Ng01-187L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,878,689 - 18,879,818)(19,017,292 - 19,018,289)
sequence
ggaattcccagctgctacagagactcagtatgtactgttttggatttgtc
cttcctgttttgacttctgtccaaatgcactctgttcctctcttcgatgt
atacctttccaatctgttgccattctgatctctccctctctcatttatga
tattactctttccttgttttctttttcctactataataagacactctgct
tggcttcttagactctcacatcatcagcctctcaaggattgatgctctgc
tggtcaagatgttggcaggagacccagcctccccacccccatcccccgcg
cacacaaagaatgccctgggaaaacagtgtggggagcaaagagtcagcat
gaaggaactacttattgcctacctaggggtcttcaagaggaaaactcaga
gattaggcaaaccatcagacccacaatcaggtccctgtcctgggatggtc
cctctctgtgccttagagcttgtagaactggctttctcttctatgaaaca
agaagctacgttccaatgtgtagagagaacctcttataagtatcacatgt
caataaaaaaagcctatggccaatgagttgaggcatttgttacacataca
tcttacatcacgtgatttgttgcattatgcatttgttacacatttacagc
tagaactaaagcatcacaaatatgtcttgttggagaattttccccaagtt
tgcttcaaaaaattgcaaaggagggaaaacttccttactgtgaaaactct
agttatggcctgccaggctgtagccctgagcctctgactaggattgaaca
ttgatcaatgaggaatgtctgttagatttctgaggtgcttaaaaagaaag
aatggcagaacataagtgtccaaccttacatagacagttgggactgtgtt
tattcgcacacacaacaagggaatataactctaaaagatggttggaaatg
attgcacatccattttgtttcctctcctttctgagtttcctttgccagcc
tgcaaggagactagggaagcaattgtgttaacatgaagctattcaggccc
ttaactacatgacagagactatataatggaacttccatacaggcaactca
tgatagctaacaagagatagtataccagcc
gaattccaggactccagtacccaagaactagacaggaagtcgtgttttct
tttgtgcagctgtcactccacactcagacaattgtttccctgagctatga
ccttgcctaggagactactttccattcctgtccctactaacctggatctc
tctctctctctctctctctctctctctctctctctctctctcgaaaatac
tctgtttcttgtgtttatggatacccctctctctggttatcctgaaattt
ccctccctcctggcatctaccaaggggaatacagaacccttgctgcagaa
attaaccagacaaaggacataggtgacacagggagactagagagcagttg
ggctcagccaacacacagtccaaccaacccataatgctaaaaggttgcct
ggaaacagtccataggttaggagcccacagtcctttccaggacacacagg
tcacttcttccccataacaaagaacattaaattccccacccaactgctct
cagtactctgtttcaattcaggaacttgactggtgacattaatgataaat
agcttatcttcatccccagtcatcacagagctggtcccttccaaccatca
cagacatctttgtctccttcctgctgcaaaaacccaccttaccagagctc
tgagtacacaagacagactaagaactcagctgggtctgtgtgtcacaggg
acatgtaggaaagatggaagctccctctttgatgctgacagactcatgtc
caggagtcagcagatgtcagcccatggatgagtcattgttctctgagggc
atgtcgatgctatcatccttgttgctcaaggtctttttggaggacatcat
aacagagaaattgtgagaaagatgaggggcagcactgaagtgagtgactg
agcacttccatggactcagaccccatccgcacacagcccataggattttg
gagtgctctgctgaagacactcatctcaaaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_18878689_18879818
seq2: B6Ng01-187L16.b_49_1177

seq1  GAATTCCCAGCTGCTACAGAGACTCAGTATGTACTGTTTTGGATTTGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCTGCTACAGAGACTCAGTATGTACTGTTTTGGATTTGTCC  50

seq1  TTCCTGTTTTGACTTCTGTCCAAATGCACTCTGTTCCTCTCTTCGATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTGACTTCTGTCCAAATGCACTCTGTTCCTCTCTTCGATGTA  100

seq1  TACCTTTCCAATCTGTTGCCATTCTGATCTCTCCCTCTCTCATTTATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCAATCTGTTGCCATTCTGATCTCTCCCTCTCTCATTTATGAT  150

seq1  ATTACTCTTTCCTTGTTTTCTTTTTCCTACTATAATAAGACACTCTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCTTTCCTTGTTTTCTTTTTCCTACTATAATAAGACACTCTGCTT  200

seq1  GGCTTCTTAGACTCTCACATCATCAGCCTCTCAAGGATTGATGCTCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTAGACTCTCACATCATCAGCCTCTCAAGGATTGATGCTCTGCT  250

seq1  GGTCAAGATGTTGGCAGGAGACCCAGCCTCCCCACCCCCATCCCCCGCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGATGTTGGCAGGAGACCCAGCCTCCCCACCCCCATCCCCCGCGC  300

seq1  ACACAAAGAATGCCCTGGGAAAACAGTGTGGGGAGCAAAGAGTCAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGAATGCCCTGGGAAAACAGTGTGGGGAGCAAAGAGTCAGCATG  350

seq1  AAGGAACTACTTATTGCCTACCTAGGGGTCTTCAAGAGGAAAACTCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTACTTATTGCCTACCTAGGGGTCTTCAAGAGGAAAACTCAGAG  400

seq1  ATTAGGCAAACCATCAGACCCACAATCAGGTCCCTGTCCTGGGATGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGCAAACCATCAGACCCACAATCAGGTCCCTGTCCTGGGATGGTCC  450

seq1  CTCTCTGTGCCTTAGAGCTTGTAGAACTGGCTTTCTCTTCTATGAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTGCCTTAGAGCTTGTAGAACTGGCTTTCTCTTCTATGAAACAA  500

seq1  GAAGCTACGTTCCAATGTGTAGAGAGAACCTCTTATAAGTATCACATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTACGTTCCAATGTGTAGAGAGAACCTCTTATAAGTATCACATGTC  550

seq1  AATAAAAAAAGCCTATGGCCAATGAGTTGAGGCATTTGTTACACATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAAGCCTATGGCCAATGAGTTGAGGCATTTGTTACACATACAT  600

seq1  CTTACATCACGTGATTTGTTGCATTATGCATTTGTTACACATTTACAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATCACGTGATTTGTTGCATTATGCATTTGTTACACATTTACAGCT  650

seq1  AGAACTAAAGCATCACAAATATGTCTTGTTGGAGAATTTTCCCCAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTAAAGCATCACAAATATGTCTTGTTGGAGAATTTTCCCCAAGTTT  700

seq1  GCTTCAAAAAATTGCAAAGGAGGGAAAACTTCCTTACTGTGAAAACTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAAAATTGCAAAGGAGGGAAAACTTCCTTACTGTGAAAACTCTA  750

seq1  GTTATGGCCTGCCAGGCTGTAGCCCTGAGCCTCTGACTAGGATTGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGCCTGCCAGGCTGTAGCCCTGAGCCTCTGACTAGGATTGAACAT  800

seq1  TGATCAATGAGGAATGTCTGTTAGATTTCTGAGGTGCTTAAAAAG-AAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATCAATGAGGAATGTCTGTTAGATTTCTGAGGTGCTTAAAAAGAAAGA  850

seq1  ATGGCAGAACATAGGTGTCCAACCTTACATAGACAGTTGGGACTGTGTTT  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAACATAAGTGTCCAACCTTACATAGACAGTTGGGACTGTGTTT  900

seq1  ATTCGCACACACAACAAGGGAATATAACTCTAAAAGATGGTTGGAAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCACACACAACAAGGGAATATAACTCTAAAAGATGGTTGGAAATGA  950

seq1  TTGCAACATCCATTTTGTTTCCTCT-CTTTCTGAGTTTCC-TTGCCAGCC  997
      |||| |||||||||||||||||||| |||||||||||||| |||||||||
seq2  TTGC-ACATCCATTTTGTTTCCTCTCCTTTCTGAGTTTCCTTTGCCAGCC  999

seq1  TGCAAAGGAGACTA-GGAAGCATTGTTGTTTAACATGAAGCTATTCAGGC  1046
      ||| |||||||||| ||||||| |  || |||||||||||||||||||||
seq2  TGC-AAGGAGACTAGGGAAGCAATTGTG-TTAACATGAAGCTATTCAGGC  1047

seq1  CCTTACCTACATGACAGAGACTATATAAATGGAAACTTCATACAAGGCCA  1096
      ||||| |||||||||||||||||||| |||||||  | ||||| |||| |
seq2  CCTTAACTACATGACAGAGACTATAT-AATGGAACTTCCATAC-AGGCAA  1095

seq1  CTCATGATAAACCAAC-AGAGATAGTATACCAGCC  1130
      |||||||| | | ||| ||||||||||||||||||
seq2  CTCATGAT-AGCTAACAAGAGATAGTATACCAGCC  1129

seq1: chr7_19017292_19018289
seq2: B6Ng01-187L16.g_64_1049 (reverse)

seq1  TCCTCCTTCTGAGATGAGTGTTCTCTCAGGCAAGAGCACTTCCCAAAATC  50
      |||||||| ||||||||||| ||| ||||   ||||||||  ||||||||
seq2  TCCTCCTT-TGAGATGAGTG-TCT-TCAG--CAGAGCACT--CCAAAATC  43

seq1  CTATGGGCTGTGTGCGG-TGGGGTCTGAGTCCATAGAAGTGCTCAGTCAC  99
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  CTATGGGCTGTGTGCGGATGGGGTCTGAGTCCATGGAAGTGCTCAGTCAC  93

seq1  TTCCACTCTCAGTGCTGCACCTCATCTTTCTCACATTTTCTCTCTTTATG  149
      |  |||| |||||||||| |||||||||||||||| |||||||  |||||
seq2  T--CACT-TCAGTGCTGCCCCTCATCTTTCTCACAATTTCTCT-GTTATG  139

seq1  ATTCTCCTCCAAAAAGACCTTGAGCAACAAGGCTGATAAGCATCGACATG  199
      | | |||||||||||||||||||||||||||| |||| ||||||||||||
seq2  A-TGTCCTCCAAAAAGACCTTGAGCAACAAGGATGAT-AGCATCGACATG  187

seq1  CCCTCAGAGAACAATGACTCATCCATGGGCTGACATCTGCTGACTCCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGAGAACAATGACTCATCCATGGGCTGACATCTGCTGACTCCTGG  237

seq1  ACATGAGTCTGTCAGCATCAAAGAGGGAGCTTCCATCTTTCCTACATGTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTCTGTCAGCATCAAAGAGGGAGCTTCCATCTTTCCTACATGTC  287

seq1  CCTGTGACACACAGACCCAGCTGAGTTCCTAGTCTGTCTTGTGTACTCAG  349
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGTGACACACAGACCCAGCTGAGTTCTTAGTCTGTCTTGTGTACTCAG  337

seq1  AGCTCTGGTAAGGTGGGTTTTTGCAGCAGGAAGGAGACAAAGATGTCTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGTAAGGTGGGTTTTTGCAGCAGGAAGGAGACAAAGATGTCTGT  387

seq1  GATGGTTGGAAGGGACCAGCTCTGTGATGACTGGGGATGAAGATAAGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGGAAGGGACCAGCTCTGTGATGACTGGGGATGAAGATAAGCTA  437

seq1  TTTATCATTAATGTCACCAGTCAAGTTCCTGAATTGAAACAGAGTACTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTAATGTCACCAGTCAAGTTCCTGAATTGAAACAGAGTACTGA  487

seq1  GAGCAGCTGGGTGGGGAATTTAATGTTCTTTGTTATGGGGAAGAAGTGAC  549
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTGGGTGGGGAATTTAATGTTCTTTGTTATGGGGAAGAAGTGAC  537

seq1  CTGTGTGTCCTGGAAAGGACTGTGGGCTCCTAACCTATGGACTGTTTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTCCTGGAAAGGACTGTGGGCTCCTAACCTATGGACTGTTTCCA  587

seq1  GGCAACCTTCTAGCATTATGGGTTGGTTGGACTGTGTGTTGGCTGAGCCC  649
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCTTTTAGCATTATGGGTTGGTTGGACTGTGTGTTGGCTGAGCCC  637

seq1  AACTGCTCTCTAGTCTCCCTGTGTCACCTATGTCCTTTGTCTGGTTAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTCTCTAGTCTCCCTGTGTCACCTATGTCCTTTGTCTGGTTAATT  687

seq1  TCTGCAGCAAGGGTTCTGTATTCCCCTTGGTAGATGCCAGGAGGGAGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCAAGGGTTCTGTATTCCCCTTGGTAGATGCCAGGAGGGAGGGA  737

seq1  AATTTCAGGATAACCAGAGAGAGGGGTATCCATAAACACAAGAAACAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGATAACCAGAGAGAGGGGTATCCATAAACACAAGAAACAGAG  787

seq1  TATTTTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  837

seq1  AGATCCAGGTTAGTAGGGACAGGAATGGAAAGTAGTCTCCTAGGCAAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAGGTTAGTAGGGACAGGAATGGAAAGTAGTCTCCTAGGCAAGGT  887

seq1  CATAGCTCAGGGAAACAATTGTCTGAGTGTGGAGTGACAGCTGCACAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCAGGGAAACAATTGTCTGAGTGTGGAGTGACAGCTGCACAAAA  937

seq1  GAAAACACGACTTCCTGTCTAGTTCTTGGGTACTGGAGTCCTGGAATTC  998
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACGACTTCCTGTCTAGTTCTTGGGTACTGGAGTCCTGGAATTC  986