BAC Information

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BAC

Clone NameB6Ng01-188E03
Chromosome7 (Build37)
Map Location 30,138,294 - 30,139,331
singlet/doubletsinglet
Overlap geneSipa1l3
Upstream genePlekhg2, Zfp36, Ixl, Paf1, Samd4b, 1700085B13Rik, Gmfg, Lrfn1, LOC624672, 1700028B04Rik, EG330496, Il28, Sycn, 1190020J12Rik, Pak4, C330005M16Rik, Fbxo27, Fbxo17, Mrps12, Sars2, EG624918, Nfkbib, Sirt2, 5830482F20Rik, Hnrpl, Ech1, Lgals4, Lgals7, Capn12, Actn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4
Downstream geneLOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188E03.bB6Ng01-188E03.g
ACCGA012602GA012603
length1,045918
definitionB6Ng01-188E03.b B6Ng01-188E03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataactcgcgtgcatgtgtgtgtgtgtgtgtacaatgttcaatc
ctgtcagtcagaaaaatggaaattaagctgatggtgtggtcatacatgcc
tgtaatcacagcactcacgaggcatggacaaggaggattagaaatattag
gctatcctcagctacatagtgtgaggctagcctgggctacatcacatcac
atcgcatcacaacataacataacatacatctttctaaataaataaatgaa
tgaatacgtgagttcagtgggattgaattaaaagaaagagacaaagaaaa
tgacacagtgacagcactctaagtccaccccaggagcccagatagaaagg
cttaaggacatacggccatagagtgcttctatgtcactggtgggtgtgga
aatggttcagcactttggggtatagtttggtgcagtttcttataaagtca
aatacacaatctagctgttttacactaggaagacactcacagagagacac
tcctaagcagcctcaaactggtccccgtagcatccctcaagtaccagagt
ggggtgtactcagacaacggaagagtagatgcagaaatcccacgctacat
ccagtcgtgtggctgcctgcactagcatgacaccaagtcccagaatccag
aagcacataaacaaagtagacatggcgtggctttatagtctacacggccc
aaacgcagctgagaagggaggtcacctgtgccttctcagggagaagccct
tgggaagcggcagggggtgttggggcttacctggttttgggcgctccatg
gtgctctcctggctggtcaggccacctgatgaggagtcaccgctggacat
cccatcgtgcataaagtgagggtcaaacgacagcagagggtgtggggcag
ctgcgtacctgcagagcagagagtgaacaaagtcccggagggacagcacc
gcgtgagcccattgcccgcttgccagtggctttttaaccatccaggagac
ctcctgctggtggatggggaggcaaggagctgcctggccaaggct
gaattcaccccacaaaccatacaaacatggatctcagttaagcaagaata
gtttattgaatgcacaacccaagacttattgatcgcagccaccaaaaaaa
aaacccaaaaacctgggagcataattgtggtaccagtctgttcttatcgc
aggcttttttataggaaaagccaagttcagaagttcagaaggcaaggctg
actagacaaagaattatcaactagcttttaggctgattggtcctgcatga
ggaaaggagtggtggatgggtggtgaacaggggagtctcggagcactggg
gtgactgagcctgagaattacaaccacagagctatgcccttttaggagaa
gttgtcagtgtcatctgtgcgtaattccctgagaacctgaactgaatttc
atcttctgagcaaaatggagactgaatacaaaatggctgcagttatgttc
aaaggagctggcctccacagtagctgagggagggagcctatagcccgttt
cccacaatcccttaactgctactttccagttaggatccaccagaggggga
gactctggtgagaaattagaaaagcaggaagaagaagacgtagtctgcct
ggttctgacagtagagaccagtctggccaccccatcagcaccaggaatgg
gtataatgggtttcaggagtcccggtaggtccagctctgcctccggcaat
tctacaccaacagtgggtgggcactagcatgaagctgctgatccaccaag
cttgcctcctggggtccacaaggctcacacctccagttttgtttctctta
ccctactccctctccttccctccctccctccctctccttttccctctctc
cctctccctcctctccctcctctctctcactcctctctctctctctctct
ctctctcaccccttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30138294_30139331
seq2: B6Ng01-188E03.b_45_1089

seq1  GAATTCATAACTCGCGTGCATGTGTGTGTGTGTGTGTACAATGTTCAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTCGCGTGCATGTGTGTGTGTGTGTGTACAATGTTCAATC  50

seq1  CTGTCAGTCAGAAAAATGGAAATTAAGCTGATGGTGTGGTCATACATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGTCAGAAAAATGGAAATTAAGCTGATGGTGTGGTCATACATGCC  100

seq1  TGTAATCACAGCACTCACGAGGCATGGACAAGGAGGATTAGAAATATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCACAGCACTCACGAGGCATGGACAAGGAGGATTAGAAATATTAG  150

seq1  GCTATCCTCAGCTACATAGTGTGAGGCTAGCCTGGGCTACATCACATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCCTCAGCTACATAGTGTGAGGCTAGCCTGGGCTACATCACATCAC  200

seq1  ATCGCATCACAACATAACATAACATACATCTTTCTAAATAAATAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCATCACAACATAACATAACATACATCTTTCTAAATAAATAAATGAA  250

seq1  TGAATACGTGAGTTCAGTGGGATTGAATTAAAAGAAAGAGACAAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACGTGAGTTCAGTGGGATTGAATTAAAAGAAAGAGACAAAGAAAA  300

seq1  TGACACAGTGACAGCACTCTAAGTCCACCCCAGGAGCCCAGATAGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAGTGACAGCACTCTAAGTCCACCCCAGGAGCCCAGATAGAAAGG  350

seq1  CTTAAGGACATACGGCCATAGAGTGCTTCTATGTCACTGGTGGGTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGACATACGGCCATAGAGTGCTTCTATGTCACTGGTGGGTGTGGA  400

seq1  AATGGTTCAGCACTTTGGGGTATAGTTTGGTGCAGTTTCTTATAAAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTCAGCACTTTGGGGTATAGTTTGGTGCAGTTTCTTATAAAGTCA  450

seq1  AATACACAATCTAGCTGTTTTACACTAGGAAGACACTCACAGAGAGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACAATCTAGCTGTTTTACACTAGGAAGACACTCACAGAGAGACAC  500

seq1  TCCTAAGCAGCCTCAAACTGGTCCCCGTAGCATCCCTCAAGTACCAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCAGCCTCAAACTGGTCCCCGTAGCATCCCTCAAGTACCAGAGT  550

seq1  GGGGTGTACTCAGACAACGGAAGAGTAGATGCAGAAATCCCACGCTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTACTCAGACAACGGAAGAGTAGATGCAGAAATCCCACGCTACAT  600

seq1  CCAGTCGTGTGGCTGCCTGCACTAGCATGACACCAAGTCCCAGAATCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCGTGTGGCTGCCTGCACTAGCATGACACCAAGTCCCAGAATCCAG  650

seq1  AAGCACATAAACAAAGTAGACATGGCGTGGCTTTATAGTCTACACGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATAAACAAAGTAGACATGGCGTGGCTTTATAGTCTACACGGCCC  700

seq1  AAACGCAGCTGAGAAGGGAGGTCACCTGTGCCTTCTCAGGGAGAAGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGCTGAGAAGGGAGGTCACCTGTGCCTTCTCAGGGAGAAGCCCT  750

seq1  TGGGAAGCGGCAGGGGGTGTTGGGGCTTACCTGGTTTTGGGCGCTCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCGGCAGGGGGTGTTGGGGCTTACCTGGTTTTGGGCGCTCCATG  800

seq1  GTGCTCTCCTGGCTGGTCAGGCCACCTGATGAGGAGTCACCGCTGGACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTCCTGGCTGGTCAGGCCACCTGATGAGGAGTCACCGCTGGACAT  850

seq1  CCCATCGTGCATAAAGTGAGGGTCAAACGACAGCAGAGGGTGTGGGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGTGCATAAAGTGAGGGTCAAACGACAGCAGAGGGTGTGGGGCAG  900

seq1  CTGCGTACCTGCAGAGCAGAGAGTGAACAAAGTCCCGGAGGGACAGCACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTACCTGCAGAGCAGAGAGTGAACAAAGTCCCGGAGGGACAGCACC  950

seq1  GCGTGAGCCCATTGCCCGCTTGCCAGTGGCTTTTTAA-CATCCAGGAGAC  999
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCGTGAGCCCATTGCCCGCTTGCCAGTGGCTTTTTAACCATCCAGGAGAC  1000

seq1  --TCTGCT-GTGGAT-GGGAGGCAAGGAGCTG-CTGG-CAAGGCT  1038
         ||||| |||||| |||||||||||||||| |||| |||||||
seq2  CTCCTGCTGGTGGATGGGGAGGCAAGGAGCTGCCTGGCCAAGGCT  1045