BAC Information

Click to search

BAC

Clone NameB6Ng01-189A07
Chromosome7 (Build37)
Map Location 84,376,875 - 84,528,058
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC434200, EG244071
Downstream geneA330068G13Rik, Ntrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189A07.bB6Ng01-189A07.g
ACCGA013153GA013154
length1,222635
definitionB6Ng01-189A07.b B6Ng01-189A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,376,875 - 84,378,082)(84,527,424 - 84,528,058)
sequence
gaattcccaagtaattgaaatggcttcactccatgatatgtctctcaggg
cactcttggaaattaaatgttacttctcaacagttatttgcttacttcat
cctcattttattaaataatcataaaaaccttttcaaatttaaatatgcat
gctctgttatctcagcgatctggcaagatggagaggctgggtgaaacaca
gccaagtccagggtctttttgctttttgagaaattttcaatgtgcactca
agtatatcccaaatcatgagcatctcctagactgctgtctcacacacaag
agggtctaaccttatttgcaccagagcagcagaaattgcatctgattaga
atttgctcaaggctttttctgggttggaaacccctcacacagttaataga
aagggagtgaattgatcttccatttgctccagaagagtttggcaaaagat
tcattcttattgaggaaacagagagatgggtgcccactattatgtaggtg
agctttattaggttcaatttgtaacaaagccctgctcctcgttgtaggga
cgcttcctttcacatgactggttacacatccgcaaaattcaaaatggaaa
acatattctcatttgaagttaaatcgtgagacatgaaatgacttatgcag
gttcagttcccaggtgaaccacagcagtgtacagtggcagagtgggtaaa
tggtggatgtggacaaaaccaaagcaatcttttgttttccacctctcaca
agataacattggacttttaagtcccccccacgctaaaatcaatagtacat
gcttttgtgaatacaaaagttagttttagtgtgcactcataaagtataat
aaatggtaatattcaatatcctaatacgacaatacaaatctattattgta
ttaatgttgctagtaggtgggttgaagcaatgtggaactgtgttatagct
tgcaagctgtgctattcggaaaatattaagtttcattctgtttttgttgt
tcactgtacctgataatttttttcatcaaggcagaaaagaacaggttgga
cattcacacacacacacacacagatacgcacacgcacactcacactcact
accatgggcattgtgggtgtagccttataaaaaaaaagagttttgcattt
tgtgcatcctggtctcacactttctctccctctgaattcagctgaagatt
cagggccaaggaaacacatctt

gaattcatttgaaatatcaagttttaaaagcggttctccatgcaataaca
ggtaactgctaaatcacccagcagattcataatttaaaatattatgattt
tgcttcataatgtatactcaatcttttcattaagttatgcctattggtag
tctccatttcaacccaatttcattgatcattccttaactttctggaacat
tttattcattttaatccttccctgcttattcaactacctgtacatctgta
ttttctaaattattattattaactgtgtatcttttactgccttgcaaaat
ctaagatccaaactgactgctgagcatcagtataaaataattttagaatg
ttcaaacagtgatgttttgggccaaaaggaaataactttcactctctttg
acagagaacatccaaactcaatgtaagcatggatttcattcaatcagaaa
agaaaggagacttaatgaaacacaacattttcatgcatgttcctcagcct
ttgctttcttcaaacatactaaaaaacaaggaagcccttatgtccttgga
actgaagacctaaggtataagttttggccattagaattttcttactatgt
atgtatgtatgtatgtatgtatgtatgtatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_84376875_84378082
seq2: B6Ng01-189A07.b_45_1266

seq1  GAATTCCCAAGTAATTGAAATGGCTTCACTCCATGATATGTCTCTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGTAATTGAAATGGCTTCACTCCATGATATGTCTCTCAGGG  50

seq1  CACTCTTGGAAATTAAATGTTACTTCTCAACAGTTATTTGCTTACTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGAAATTAAATGTTACTTCTCAACAGTTATTTGCTTACTTCAT  100

seq1  CCTCATTTTATTAAATAATCATAAAAACCTTTTCAAATTTAAATATGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTATTAAATAATCATAAAAACCTTTTCAAATTTAAATATGCAT  150

seq1  GCTCTGTTATCTCAGCGATCTGGCAAGATGGAGAGGCTGGGTGAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTTATCTCAGCGATCTGGCAAGATGGAGAGGCTGGGTGAAACACA  200

seq1  GCCAAGTCCAGGGTCTTTTTGCTTTTTGAGAAATTTTCAATGTGCACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCCAGGGTCTTTTTGCTTTTTGAGAAATTTTCAATGTGCACTCA  250

seq1  AGTATATCCCAAATCATGAGCATCTCCTAGACTGCTGTCTCACACACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATCCCAAATCATGAGCATCTCCTAGACTGCTGTCTCACACACAAG  300

seq1  AGGGTCTAACCTTATTTGCACCAGAGCAGCAGAAATTGCATCTGATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTAACCTTATTTGCACCAGAGCAGCAGAAATTGCATCTGATTAGA  350

seq1  ATTTGCTCAAGGCTTTTTCTGGGTTGGAAACCCCTCACACAGTTAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCAAGGCTTTTTCTGGGTTGGAAACCCCTCACACAGTTAATAGA  400

seq1  AAGGGAGTGAATTGATCTTCCATTTGCTCCAGAAGAGTTTGGCAAAAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGTGAATTGATCTTCCATTTGCTCCAGAAGAGTTTGGCAAAAGAT  450

seq1  TCATTCTTATTGAGGAAACAGAGAGATGGGTGCCCACTATTATGTAGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTATTGAGGAAACAGAGAGATGGGTGCCCACTATTATGTAGGTG  500

seq1  AGCTTTATTAGGTTCAATTTGTAACAAAGCCCTGCTCCTCGTTGTAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATTAGGTTCAATTTGTAACAAAGCCCTGCTCCTCGTTGTAGGGA  550

seq1  CGCTTCCTTTCACATGACTGGTTACACATCCGCAAAATTCAAAATGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCTTTCACATGACTGGTTACACATCCGCAAAATTCAAAATGGAAA  600

seq1  ACATATTCTCATTTGAAGTTAAATCGTGAGACATGAAATGACTTATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTCTCATTTGAAGTTAAATCGTGAGACATGAAATGACTTATGCAG  650

seq1  GTTCAGTTCCCAGGTGAACCACAGCAGTGTACAGTGGCAGAGTGGGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTCCCAGGTGAACCACAGCAGTGTACAGTGGCAGAGTGGGTAAA  700

seq1  TGGTGGATGTGGACAAAACCAAAGCAATCTTTTGTTTTCCACCTCTCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGATGTGGACAAAACCAAAGCAATCTTTTGTTTTCCACCTCTCACA  750

seq1  AGATAACATTGGACTTTTAAGTCCCCCCCACGCTAAAATCAATAGTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACATTGGACTTTTAAGTCCCCCCCACGCTAAAATCAATAGTACAT  800

seq1  GCTTTTGTGAATACAAAAGTTAGTTTTAGTGTGCACTCATAAAGTATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGAATACAAAAGTTAGTTTTAGTGTGCACTCATAAAGTATAAT  850

seq1  AAATGGTAATATTCAATATCCTAATACGACAATACAAATCTTATTATTGT  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAATGGTAATATTCAATATCCTAATACGACAATACAAATC-TATTATTGT  899

seq1  ATTAATGTTGCTAGTAGGTGGGTTGAAGCAATGTGGAACTGTGTTATAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTGCTAGTAGGTGGGTTGAAGCAATGTGGAACTGTGTTATAGC  949

seq1  TTGCAAGCTGTGCTATTCGGAAAATATTAAGTTTCATTCTG-TTTTGTTG  999
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGCAAGCTGTGCTATTCGGAAAATATTAAGTTTCATTCTGTTTTTGTTG  999

seq1  TTCACTGTACCTGATAA-TTTTTTCATCAAAGGCAGAAAAG-ACAGGTTG  1047
      ||||||||||||||||| |||||||||| |||||||||||| ||||||||
seq2  TTCACTGTACCTGATAATTTTTTTCATC-AAGGCAGAAAAGAACAGGTTG  1048

seq1  GACATTCACACACACACACACACACACACACACACACACACACACACACA  1097
      |||||||||||||||||||||||| | || ||||| ||||| ||||| ||
seq2  GACATTCACACACACACACACACAGATACGCACACGCACACTCACACTCA  1098

seq1  C--ACAAAGGCATTGTGTGT-TAG-CTTATAAAAAAAGAG---TTTGCAT  1140
      |   ||  ||||||||| || ||| |||||||||||| ||   |||||||
seq2  CTACCATGGGCATTGTGGGTGTAGCCTTATAAAAAAAAAGAGTTTTGCAT  1148

seq1  TT--TGCATTCTGGTCTCA-ACTTTC-CT-CCTCT-AGATCAGTTGAAGA  1184
      ||  ||||| ||||||||| |||||| || ||||| |  |||| ||||| 
seq2  TTTGTGCATCCTGGTCTCACACTTTCTCTCCCTCTGAATTCAGCTGAAG-  1197

seq1  ATTCTAGG-CAAGGAAACACATCTT  1208
      ||||  || ||||||||||||||||
seq2  ATTCAGGGCCAAGGAAACACATCTT  1222


seq1: chr7_84527424_84528058
seq2: B6Ng01-189A07.g_68_702 (reverse)

seq1  CATACATACATACATACATACATACATACATACATACATAGTAAGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACATACATACATACATACATACATACATACATAGTAAGAAAAT  50

seq1  TCTAATGGCCAAAACTTATACCTTAGGTCTTCAGTTCCAAGGACATAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGCCAAAACTTATACCTTAGGTCTTCAGTTCCAAGGACATAAGG  100

seq1  GCTTCCTTGTTTTTTAGTATGTTTGAAGAAAGCAAAGGCTGAGGAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTGTTTTTTAGTATGTTTGAAGAAAGCAAAGGCTGAGGAACATG  150

seq1  CATGAAAATGTTGTGTTTCATTAAGTCTCCTTTCTTTTCTGATTGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATGTTGTGTTTCATTAAGTCTCCTTTCTTTTCTGATTGAATGA  200

seq1  AATCCATGCTTACATTGAGTTTGGATGTTCTCTGTCAAAGAGAGTGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATGCTTACATTGAGTTTGGATGTTCTCTGTCAAAGAGAGTGAAAG  250

seq1  TTATTTCCTTTTGGCCCAAAACATCACTGTTTGAACATTCTAAAATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTTTGGCCCAAAACATCACTGTTTGAACATTCTAAAATTATT  300

seq1  TTATACTGATGCTCAGCAGTCAGTTTGGATCTTAGATTTTGCAAGGCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGATGCTCAGCAGTCAGTTTGGATCTTAGATTTTGCAAGGCAGT  350

seq1  AAAAGATACACAGTTAATAATAATAATTTAGAAAATACAGATGTACAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATACACAGTTAATAATAATAATTTAGAAAATACAGATGTACAGGT  400

seq1  AGTTGAATAAGCAGGGAAGGATTAAAATGAATAAAATGTTCCAGAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAATAAGCAGGGAAGGATTAAAATGAATAAAATGTTCCAGAAAGTT  450

seq1  AAGGAATGATCAATGAAATTGGGTTGAAATGGAGACTACCAATAGGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGATCAATGAAATTGGGTTGAAATGGAGACTACCAATAGGCATA  500

seq1  ACTTAATGAAAAGATTGAGTATACATTATGAAGCAAAATCATAATATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATGAAAAGATTGAGTATACATTATGAAGCAAAATCATAATATTTT  550

seq1  AAATTATGAATCTGCTGGGTGATTTAGCAGTTACCTGTTATTGCATGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGAATCTGCTGGGTGATTTAGCAGTTACCTGTTATTGCATGGAG  600

seq1  AACCGCTTTTAAAACTTGATATTTCAAATGAATTC  635
      |||||||||||||||||||||||||||||||||||
seq2  AACCGCTTTTAAAACTTGATATTTCAAATGAATTC  635


| Home | SequenceCutter | Blast | Download |