BAC Information

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BAC

Clone NameB6Ng01-189J05
Chromosome7 (Build37)
Map Location 126,590,868 - 126,724,699
singlet/doubletdoublet
Overlap geneGp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2
Upstream geneLOC100042845, E030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871
Downstream geneAcsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189J05.bB6Ng01-189J05.g
ACCGA013563GA013564
length1,167947
definitionB6Ng01-189J05.b B6Ng01-189J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,590,868 - 126,592,012)(126,723,764 - 126,724,699)
sequence
gaattcacagtcatgccctaacacacctgagtttgaatctcatctctatc
ctgtcttatataattgggggaaatgtcttcatctgtctattataaccaaa
cagttcatgtctggttttctttagtcaataattcatacattcctttactc
acttatgcacacaagcatgtaaaaaggctaaaggttaacaccagctgtct
ttctctattgctgcccaccttactttttgatacatgttctctcagtaatc
ctagagcttgtccttttggttaggttggtgatacagtgagtcccccaaat
cctcctgtctctgcactcccaggacttgggttacagaacatgccacaatc
ctcgttttcacatgtcttctgggtactcaaactccggtccctgtgcttgc
atagcagatatcttaccacagagctctgcatacctggttttaaatattaa
aatgaaccatagtagcagcaacatgtagacatgtcaaaaacactcaagga
acatctgccattcaaaacagcatctagtaggggtgaatgcatggacacca
gaatcacagctcagatgggaaacatcacaaatctgatcttcttagctctg
tgtggggctatgagttaggggcctctctgagtcctggtttctttatctgc
atagtgaggcttcacttggtcattggaagagctcaattaggtaaagatgt
gagagctttaatgcagtgtctggcagagaggggactgaaaaggccacagg
ctcacatacatgcctcatctgaaagcctaaggtccagaagtcttcagaat
ttgggagtttctcagatttggaaatatctacagtctttataagtttactg
atttataatatgagaatcttgcagcccaaatattccaaaatctgaaactt
ttgagcttcatctttggccctcaaaaactttaagactttggaacattttt
tttaatttgaaatctctgaaatcaatgatgcttaacctataatatcataa
tcattcataatagaatggttgtggccaggaaacgctgattcttgcctttc
taaagaagacaacaaattacctcataaataggctttttgaaggatattcc
aaagtctggcacagtaattcttccttaccctgtccttctctttataagtc
accttaccatccatctt
gaattccaaatgtcacacaactgcagaaagtatctgcaactagcaaaacc
ttgcctctactacagtatgaggcaaatcacagtcagcttctgagatgaaa
atgaaagcatataaataaatgatatttctatgtcttctaaggagaccaaa
attccagaattctcactacattaagcctctatctcttgactactctttgc
ctctttttcataacccttttcatcacctaccatggcttctattgcttgat
ttcccccccccgcccccccaccctgctagaatgtaatccctgtgaagtta
ggaacatgatcattttgttccccttgtagatgttcaataagtatttccca
actaaaagagttatatgctgcttcacaatcatccgggtatcaaacagaaa
ctcaagtctagcaggtgcgatcagcccatggttccctgggagcagatacc
gtttctgtctggccatagatttctcggatttccagtcctgtcttggcttt
ccagttctccagagtctctgggagaagggtctctcctccactgaagcagc
tatgcagatgtggaaatttgtaactaaagaagagagtttacttaccttta
gattcattggaactggagtctacccagacttggggctgagtcctgggtgc
tatgatggtgttcctggttttatataggctaagtacatccagcttaataa
gtacagggatgggtctagagactcctaccagtcccctacaggtccatcac
ctggaaagatcctgttgtagcaacatccggtaaatgatggggggcaccca
ccagggtattgatggggatagctagtaaagcacctgtgaagagaaagcca
tttgttaacaactgcttctgagacacagattgcgaaactctaccatgttc
accaccaacttctcgggtttgagcgaatcctgactaaaaatcctagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_126590868_126592012
seq2: B6Ng01-189J05.b_47_1213

seq1  GAATTCACAGTCATGCCCTAACACACCTGAGTTTGAATCTCATCTCTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCATGCCCTAACACACCTGAGTTTGAATCTCATCTCTATC  50

seq1  CTGTCTTATATAATTGGGGGAAATGTCTTCATCTGTCTATTATAACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTATATAATTGGGGGAAATGTCTTCATCTGTCTATTATAACCAAA  100

seq1  CAGTTCATGTCTGGTTTTCTTTAGTCAATAATTCATACATTCCTTTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCATGTCTGGTTTTCTTTAGTCAATAATTCATACATTCCTTTACTC  150

seq1  ACTTATGCACACAAGCATGTAAAAAGGCTAAAGGTTAACACCAGCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCACACAAGCATGTAAAAAGGCTAAAGGTTAACACCAGCTGTCT  200

seq1  TTCTCTATTGCTGCCCACCTTACTTTTTGATACATGTTCTCTCAGTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATTGCTGCCCACCTTACTTTTTGATACATGTTCTCTCAGTAATC  250

seq1  CTAGAGCTTGTCCTTTTGGTTAGGTTGGTGATACAGTGAGTCCCCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTTGTCCTTTTGGTTAGGTTGGTGATACAGTGAGTCCCCCAAAT  300

seq1  CCTCCTGTCTCTGCACTCCCAGGACTTGGGTTACAGAACATGCCACAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGTCTCTGCACTCCCAGGACTTGGGTTACAGAACATGCCACAATC  350

seq1  CTCGTTTTCACATGTCTTCTGGGTACTCAAACTCCGGTCCCTGTGCTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTTCACATGTCTTCTGGGTACTCAAACTCCGGTCCCTGTGCTTGC  400

seq1  ATAGCAGATATCTTACCACAGAGCTCTGCATACCTGGTTTTAAATATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGATATCTTACCACAGAGCTCTGCATACCTGGTTTTAAATATTAA  450

seq1  AATGAACCATAGTAGCAGCAACATGTAGACATGTCAAAAACACTCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACCATAGTAGCAGCAACATGTAGACATGTCAAAAACACTCAAGGA  500

seq1  ACATCTGCCATTCAAAACAGCATCTAGTAGGGGTGAATGCATGGACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGCCATTCAAAACAGCATCTAGTAGGGGTGAATGCATGGACACCA  550

seq1  GAATCACAGCTCAGATGGGAAACATCACAAATCTGATCTTCTTAGCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACAGCTCAGATGGGAAACATCACAAATCTGATCTTCTTAGCTCTG  600

seq1  TGTGGGGCTATGAGTTAGGGGCCTCTCTGAGTCCTGGTTTCTTTATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCTATGAGTTAGGGGCCTCTCTGAGTCCTGGTTTCTTTATCTGC  650

seq1  ATAGTGAGGCTTCACTTGGTCATTGGAAGAGCTCAATTAGGTAAAGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGGCTTCACTTGGTCATTGGAAGAGCTCAATTAGGTAAAGATGT  700

seq1  GAGAGCTTTAATGCAGTGTCTGGCAGAGAGGGGACTGAAAAGGCCACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTTAATGCAGTGTCTGGCAGAGAGGGGACTGAAAAGGCCACAGG  750

seq1  CTCACATACATGCCTCATCTGAAAGCCTAAGGTCCAGAAGTCTTCAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATACATGCCTCATCTGAAAGCCTAAGGTCCAGAAGTCTTCAGAAT  800

seq1  TTGGGAGTTTCTCAGATTTGGAAATATCTACAGTCTTTATAAG-TTACTG  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGGGAGTTTCTCAGATTTGGAAATATCTACAGTCTTTATAAGTTTACTG  850

seq1  ATTTATAATATGAGAATC-TGCAGCCCAAATATTCCAAAATCTGAAACTT  898
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  ATTTATAATATGAGAATCTTGCAGCCCAAATATTCCAAAATCTGAAAC-T  899

seq1  TTTGAGCTTCATC-TTGGCCCTCAAAAACTTTAAGACTTTGGAACA-TTT  946
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TTTGAGCTTCATCTTTGGCCCTCAAAAACTTTAAGACTTTGGAACATTTT  949

seq1  TTTTAATTTGAAATCTCTG-AATCAATGATGCTTAACCTATAATATCATA  995
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTAATTTGAAATCTCTGAAATCAATGATGCTTAACCTATAATATCATA  999

seq1  ATCATTCATAATAG-ATTGTTGT-GCCAAGGAACGCTGAT--CTGCC-TT  1040
      |||||||||||||| || ||||| |||| | |||||||||   |||| ||
seq2  ATCATTCATAATAGAATGGTTGTGGCCAGGAAACGCTGATTCTTGCCTTT  1049

seq1  CTAAAG-AGACAAC-AATTA-CTCATAAATAGGCTTTT--GAGGATATT-  1084
      |||||| ||||||| ||||| |||||||||||||||||   |||||||| 
seq2  CTAAAGAAGACAACAAATTACCTCATAAATAGGCTTTTTGAAGGATATTC  1099

seq1  CAAAGTCT-GCGCAG-CATTCTTCTTTACC---TGCTTCTC-TTAT-AGT  1127
      |||||||| || |||  ||||||| |||||   | |||||| |||| |||
seq2  CAAAGTCTGGCACAGTAATTCTTCCTTACCCTGTCCTTCTCTTTATAAGT  1149

seq1  CACCTACCCACCCATCTT  1145
      |||||  ||| |||||||
seq2  CACCTTACCATCCATCTT  1167

seq1: chr7_126723764_126724699
seq2: B6Ng01-189J05.g_67_1013 (reverse)

seq1  ACTAGGA-TTTTAGTCAGGA-TCACTCAAACCCGAGAAGTT-GTGGTTGA  47
      ||||||| |||||||||||| || ||||||||||||||||| |||||  |
seq2  ACTAGGATTTTTAGTCAGGATTCGCTCAAACCCGAGAAGTTGGTGGTGAA  50

seq1  CATGGT-GAGTTTCGC-ATCTGTGTCTCAG-AGCAG-TGTT-ACAGATGG  92
      |||||| ||||||||| ||||||||||||| ||||| |||| ||| ||||
seq2  CATGGTAGAGTTTCGCAATCTGTGTCTCAGAAGCAGTTGTTAACAAATGG  100

seq1  CTTTCTCTTCACAGGTGCTTT-CCAGCTAT-CCCATCAATACCCTGGTGG  140
      ||||||||||||||||||||| | |||||| |||||||||||||||||||
seq2  CTTTCTCTTCACAGGTGCTTTACTAGCTATCCCCATCAATACCCTGGTGG  150

seq1  GTG-CCCCCATCATTTACCGGATGTTGCTACAACAGGATCTTTCCAGGTG  189
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCCCATCATTTACCGGATGTTGCTACAACAGGATCTTTCCAGGTG  200

seq1  ATGGACCTGTAGGGGACTGGTAGGAGTCTCTAGACCCATCCCTGTACTTA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACCTGTAGGGGACTGGTAGGAGTCTCTAGACCCATCCCTGTACTTA  250

seq1  TTAAGCTGGATGTACTTAGCCTATATAAAACCAGGAACACCATCATAGCA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGGATGTACTTAGCCTATATAAAACCAGGAACACCATCATAGCA  300

seq1  CCCAGGACTCAGCCCCAAGTCTGGGTAGACTCCAGTTCCAATGAATCTAA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACTCAGCCCCAAGTCTGGGTAGACTCCAGTTCCAATGAATCTAA  350

seq1  AGGTAAGTAAACTCTCTTCTTTAGTTACAAATTTCCACATCTGCATAGCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGTAAACTCTCTTCTTTAGTTACAAATTTCCACATCTGCATAGCT  400

seq1  GCTTCAGTGGAGGAGAGACCCTTCTCCCAGAGACTCTGGAGAACTGGAAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTGGAGGAGAGACCCTTCTCCCAGAGACTCTGGAGAACTGGAAA  450

seq1  GCCAAGACAGGACTGGAAATCCGAGAAATCTATGGCCAGACAGAAACGGT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACAGGACTGGAAATCCGAGAAATCTATGGCCAGACAGAAACGGT  500

seq1  ATCTGCTCCCAGGGAACCATGGGCTGATCGCACCTGCTAGACTTGAGTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCCCAGGGAACCATGGGCTGATCGCACCTGCTAGACTTGAGTTT  550

seq1  CTGTTTGATACCCGGATGATTGTGAAGCAGCATATAACTCTTTTAGTTGG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGATACCCGGATGATTGTGAAGCAGCATATAACTCTTTTAGTTGG  600

seq1  GAAATACTTATTGAACATCTACAAGGGGAACAAAATGATCATGTTCCTAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTATTGAACATCTACAAGGGGAACAAAATGATCATGTTCCTAA  650

seq1  CTTCACAGGGATTACATTCTAGCAGGGTGGGGGGGCGGGGGGGGGAAATC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGGGATTACATTCTAGCAGGGTGGGGGGGCGGGGGGGGGAAATC  700

seq1  AAGCAATAGAAGCCATGGTAGGTGATGAAAAGGGTTATGAAAAAGAGGCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAGAAGCCATGGTAGGTGATGAAAAGGGTTATGAAAAAGAGGCA  750

seq1  AAGAGTAGTCAAGAGATAGAGGCTTAATGTAGTGAGAATTCTGGAATTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGTCAAGAGATAGAGGCTTAATGTAGTGAGAATTCTGGAATTTT  800

seq1  GGTCTCCTTAGAAGACATAGAAATATCATTTATTTATATGCTTTCATTTT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTTAGAAGACATAGAAATATCATTTATTTATATGCTTTCATTTT  850

seq1  CATCTCAGAAGCTGACTGTGATTTGCCTCATACTGTAGTAGAGGCAAGGT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAGAAGCTGACTGTGATTTGCCTCATACTGTAGTAGAGGCAAGGT  900

seq1  TTTGCTAGTTGCAGATACTTTCTGCAGTTGTGTGACATTTGGAATTC  936
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGTTGCAGATACTTTCTGCAGTTGTGTGACATTTGGAATTC  947