BAC Information

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BAC

Clone NameB6Ng01-190G10
Chromosome7 (Build37)
Map Location 11,651,447 - 11,652,624
singlet/doubletsinglet
Overlap geneZscan4-ps1
Upstream geneEG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397
Downstream geneLOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190G10.bB6Ng01-190G10.g
ACCGA014164GA014165
length1,1721,188
definitionB6Ng01-190G10.b B6Ng01-190G10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgtagataaacctgacctcaaactcagaaatcctctttct
tcagcctcccaaattctgggattaaaggcacgtgccaccactgcccagct
aaattaaatcttttgaccacaccttgcaagttaagaattatactgcatat
actctttgagttttattttaggtttaaaatttcatactaagtacactgct
cccctaatatccagccatgttcctgagagcaggccttgtgcttctttgag
acactacatccaaaaaaaagatcaggtaaagttaagacaatctgaaaaca
tgggctagccagttcaaggaaggctcatcctcctgcaatgtgttgaccag
ttaaagaaactatggttggcagatctcacaggaacacaactttgtgtgtc
tctagggacaatgagtcggcatttgaaaacacattatctatagtgacttt
agaagtcagaatttgtgagtgccaggaaagatcattagacttaaggccta
gaggaatgagctagtcaataatccagtgtccctgtgctagcaggttgagg
ttaggtgtctgcaatccacgtgctcgtgcataagaagaacatgtcttccc
ttacaggtccatgtttcaatgcaaggacaagaagccctcttttctgaaaa
catgccattaaaagaagtcatcaagcttttgaaacaacagcaatctgcaa
caaggccaacaccagataatgagcagatgccagtagacaccacacaagat
agattattggccacaggttagttggtaacctagataaaagagtcatgttt
tgacggggtccattttgggtacattttcatagattgtcttctttccaaag
gacaagaaaacagtgaaaatgaatgcaacacctcttgtaatgctactgaa
ggaaatgttggtgaaagatgtggtggaaatgaaatggactcccttcttat
tatccagaaagaacagcaccctgagcatgaagaggggaatgttgtttgtc
gattccctcatggtgccagaagagcaagtcaaggcaactctagtcatcat
gtagacttccgagtgcctctgactctgcggaatgtccccatgaggacaca
aagatttatccagagaaacatcttcttgaagacaagaacattgcttaaac
acttccaggatgcagctactca
gaattcctgatctttccaaaacttttatcatgaatgggtgttgggtcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcatccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcatttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttccttttttttctagg
gcttttagatgtgttgtcaagctgctagtatgtgctgtcttcccgtttct
tcttggaggcactcagcgctatgagtttccctcttagaaatgctttcatt
gtgtccatagtttgggtacgttgtggctttcatttcattaaacctcttag
aagtcttatttctttctatttcttctgacagtatcattggagaaagatgt
tattcagttcacactgaatgtgctccaattaatagtctgtaatgtagatc
agcttagccatggatgggccctggacatagcgtatcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_11651447_11652624
seq2: B6Ng01-190G10.b_43_1214 (reverse)

seq1  TGAGTAGCTGCATTCCTGGAAGTGTTATAGCAATTGTTCTTGTCCTCA--  48
      |||||||||||| |||||||||||||  ||||| |||||||||| |||  
seq2  TGAGTAGCTGCA-TCCTGGAAGTGTTTAAGCAA-TGTTCTTGTCTTCAAG  48

seq1  GAGATGTTTTCTCTGGATAAATCCTTTGGTTGTTCCTCCATGGGGACA-T  97
       ||||| ||||||||||||||| |||||  || |||| |||||||||| |
seq2  AAGATG-TTTCTCTGGATAAAT-CTTTG--TG-TCCT-CATGGGGACATT  92

seq1  CCGCAGGAGTCAGA-GCACTCCGGAAGTCTACATGATGACTAGAGTTGCC  146
      ||||| |||||||| ||||| |||||||||||||||||||||||||||||
seq2  CCGCA-GAGTCAGAGGCACT-CGGAAGTCTACATGATGACTAGAGTTGCC  140

seq1  TTGACTTGCTCTTCTGGCACCATGAGGGAATCGACAAACAACATTCCCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTGCTCTTCTGGCACCATGAGGGAATCGACAAACAACATTCCCCT  190

seq1  CTTCATGCTCAGGGTGCTGTTCTTTCTGGATAATAAGAAGGGAGTCCATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGCTCAGGGTGCTGTTCTTTCTGGATAATAAGAAGGGAGTCCATT  240

seq1  TCATTTCCACCACATCTTTCACCAACATTTCCTTCAGTAGCATTACAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCACCACATCTTTCACCAACATTTCCTTCAGTAGCATTACAAGA  290

seq1  GGTGTTGCATTCATTTTCACTGTTTTCTTGTCCTTTGGAAAGAAGACAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCATTCATTTTCACTGTTTTCTTGTCCTTTGGAAAGAAGACAAT  340

seq1  CTATGAAAATGTACCCAAAATGGACCCCGTCAAAACATGACTCTTTTATC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAATGTACCCAAAATGGACCCCGTCAAAACATGACTCTTTTATC  390

seq1  TAGGTTACCAACTAACCTGTGGCCAATAATCTATCTTGTGTGGTGTCTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTACCAACTAACCTGTGGCCAATAATCTATCTTGTGTGGTGTCTAC  440

seq1  TGGCATCTGCTCATTATCTGGTGTTGGCCTTGTTGCAGATTGCTGTTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTGCTCATTATCTGGTGTTGGCCTTGTTGCAGATTGCTGTTGTT  490

seq1  TCAAAAGCTTGATGACTTCTTTTAATGGCATGTTTTCAGAAAAGAGGGCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCTTGATGACTTCTTTTAATGGCATGTTTTCAGAAAAGAGGGCT  540

seq1  TCTTGTCCTTGCATTGAAACATGGACCTGTAAGGGAAGACATGTTCTTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCCTTGCATTGAAACATGGACCTGTAAGGGAAGACATGTTCTTCT  590

seq1  TATGCACGAGCACGTGGATTGCAGACACCTAACCTCAACCTGCTAGCACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACGAGCACGTGGATTGCAGACACCTAACCTCAACCTGCTAGCACA  640

seq1  GGGACACTGGATTATTGACTAGCTCATTCCTCTAGGCCTTAAGTCTAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTGGATTATTGACTAGCTCATTCCTCTAGGCCTTAAGTCTAATG  690

seq1  ATCTTTCCTGGCACTCACAAATTCTGACTTCTAAAGTCACTATAGATAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCTGGCACTCACAAATTCTGACTTCTAAAGTCACTATAGATAAT  740

seq1  GTGTTTTCAAATGCCGACTCATTGTCCCTAGAGACACACAAAGTTGTGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCAAATGCCGACTCATTGTCCCTAGAGACACACAAAGTTGTGTT  790

seq1  CCTGTGAGATCTGCCAACCATAGTTTCTTTAACTGGTCAACACATTGCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGATCTGCCAACCATAGTTTCTTTAACTGGTCAACACATTGCAG  840

seq1  GAGGATGAGCCTTCCTTGAACTGGCTAGCCCATGTTTTCAGATTGTCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAGCCTTCCTTGAACTGGCTAGCCCATGTTTTCAGATTGTCTTA  890

seq1  ACTTTACCTGATCTTTTTTTTGGATGTAGTGTCTCAAAGAAGCACAAGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACCTGATCTTTTTTTTGGATGTAGTGTCTCAAAGAAGCACAAGGC  940

seq1  CTGCTCTCAGGAACATGGCTGGATATTAGGGGAGCAGTGTACTTAGTATG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCAGGAACATGGCTGGATATTAGGGGAGCAGTGTACTTAGTATG  990

seq1  AAATTTTAAACCTAAAATAAAACTCAAAGAGTATATGCAGTATAATTCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAACCTAAAATAAAACTCAAAGAGTATATGCAGTATAATTCTT  1040

seq1  AACTTGCAAGGTGTGGTCAAAAGATTTAATTTAGCTGGGCAGTGGTGGCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCAAGGTGTGGTCAAAAGATTTAATTTAGCTGGGCAGTGGTGGCA  1090

seq1  CGTGCCTTTAATCCCAGAATTTGGGAGGCTGAAGAAAGAGGATTTCTGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCTTTAATCCCAGAATTTGGGAGGCTGAAGAAAGAGGATTTCTGAG  1140

seq1  TTTGAGGTCAGGTTTATCTACAGAGTGAATTC  1178
      ||||||||||||||||||||||||||||||||
seq2  TTTGAGGTCAGGTTTATCTACAGAGTGAATTC  1172