BAC Information

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BAC

Clone NameB6Ng01-190N23
Chromosome7 (Build37)
Map Location 72,602,597 - 72,760,837
singlet/doubletdoublet
Overlap geneGm1693, EG665234
Upstream geneApba2, 5730507A09Rik, Ndnl2, Tjp1
Downstream geneTarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190N23.bB6Ng01-190N23.g
ACCGA014520GA014521
length6761,140
definitionB6Ng01-190N23.b B6Ng01-190N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,760,162 - 72,760,837)(72,602,597 - 72,603,746)
sequence
gaattcctattgccgcaagagaatcactaagttcctaagagccttgagga
gcactgaggtgtgctctagtctcatagctaattcagccgacaagctagat
aagtacaaggggccaattcaagttcacctactccagtgcctccagtgtaa
taaccagtcccactagaaaggacatcagctgaacagctctcctaggtgaa
gagatacccaaaaagggtagaggtgggatgtgttagggaaaatttggata
tcaggattgatgaaggcaatgatgtaggtagtggttcaattagctagaag
acagcaatgggtgttaactacacgttaatgcttgaagcattgaggcacct
ggcaatatgtaggcaggaaactaaatagtaattctaggaaaagaggaagt
tgagacattaaagaaataaggaaactaaaaccagtctaagaaggggttga
aaccgaggaatttagtgttggagtgctattgattattggaaagggagagt
atttcaaagctttcttagaggaggtgtaacctggttaaggagatgggtaa
aggcaagggggagagcatgcttgactgaattgacacttttatctagagtc
tcactagatgtattgatcttaaatgtttgtgagacctgtatgttgtctta
gagagttggaggtgtgtgtgtgtgtg
gaattcttgagaagatgaccatagaatgggaagtggctaacgtttactgg
ggccactataacaccatgccatggactggaggccttaaacagcaaacatg
gatgtctctcaggtctagaggccggaaatctaaggtcaaggccggaagtc
caaggtcaaggctctggcaggtgggtgcctgaggagttcctgtttctggt
gctgacagtagccttcttggaaggccttgaaatggcttgtcatttcttgg
agaggaccagggggctctgggtggtcttctgtttctctaacccctttaga
agcagtccacctggccgggcggtggtggcgctcacctttaatcccagcac
tgggaggcagaggcaggcagatttctgagttcgaggccagcctggtctac
aaagtgagttccaggacagccagggctatacagagaaaccctgtctcaaa
aaacaaaacaacaaaacaaaacaacaaaaaaagaagcagtccacctcatg
agccaacttcccatcaaagaacacactgcccatcacactggaggtgagga
tttcaacatagtgtgaatgaacatagacagttgttggaattaagtattag
gtcatccatatagagttagacacaatctttgcacagaacttatcacaggg
tatcgtgacagctgttctagagacgacagaactgcttgacatcttcattt
tggtggtgcttagacatgcgcatgtcaaacctctgagatccgtatgccca
aagaggagtgaaatctgcggctggtgacctaaagaatagatttcaacagc
agctgaatgtaatttcatatggttaagtgcttccacctagacagcctacg
ggagaacaggaagcagagatgagcggagactgacagtaataagacagtgt
cataaaccaaaaccatttcatcaaaggcctgagaaacagtctcttcccac
agtttcagcaaaggaggtgacagtgagtgagtggggctacatctccgagc
tgaggaagccagcagcttatgtaaactcattgcatgaagtagcaggaagg
caagggtggagaatgtgagattcttaaagacctggtagttcacagcatag
tcctctagtatagcaagtccgaaggcgttaaacagagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_72760162_72760837
seq2: B6Ng01-190N23.b_47_722 (reverse)

seq1  CACACACACACACACCTCCAACTCTCTAAGACAACATACAGGTCTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCTCCAACTCTCTAAGACAACATACAGGTCTCACAA  50

seq1  ACATTTAAGATCAATACATCTAGTGAGACTCTAGATAAAAGTGTCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAAGATCAATACATCTAGTGAGACTCTAGATAAAAGTGTCAATTC  100

seq1  AGTCAAGCATGCTCTCCCCCTTGCCTTTACCCATCTCCTTAACCAGGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCATGCTCTCCCCCTTGCCTTTACCCATCTCCTTAACCAGGTTA  150

seq1  CACCTCCTCTAAGAAAGCTTTGAAATACTCTCCCTTTCCAATAATCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCTCTAAGAAAGCTTTGAAATACTCTCCCTTTCCAATAATCAATA  200

seq1  GCACTCCAACACTAAATTCCTCGGTTTCAACCCCTTCTTAGACTGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCCAACACTAAATTCCTCGGTTTCAACCCCTTCTTAGACTGGTTTT  250

seq1  AGTTTCCTTATTTCTTTAATGTCTCAACTTCCTCTTTTCCTAGAATTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTATTTCTTTAATGTCTCAACTTCCTCTTTTCCTAGAATTACT  300

seq1  ATTTAGTTTCCTGCCTACATATTGCCAGGTGCCTCAATGCTTCAAGCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTCCTGCCTACATATTGCCAGGTGCCTCAATGCTTCAAGCATT  350

seq1  AACGTGTAGTTAACACCCATTGCTGTCTTCTAGCTAATTGAACCACTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGTAGTTAACACCCATTGCTGTCTTCTAGCTAATTGAACCACTACC  400

seq1  TACATCATTGCCTTCATCAATCCTGATATCCAAATTTTCCCTAACACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCATTGCCTTCATCAATCCTGATATCCAAATTTTCCCTAACACATC  450

seq1  CCACCTCTACCCTTTTTGGGTATCTCTTCACCTAGGAGAGCTGTTCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTACCCTTTTTGGGTATCTCTTCACCTAGGAGAGCTGTTCAGCT  500

seq1  GATGTCCTTTCTAGTGGGACTGGTTATTACACTGGAGGCACTGGAGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCCTTTCTAGTGGGACTGGTTATTACACTGGAGGCACTGGAGTAGG  550

seq1  TGAACTTGAATTGGCCCCTTGTACTTATCTAGCTTGTCGGCTGAATTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGAATTGGCCCCTTGTACTTATCTAGCTTGTCGGCTGAATTAGC  600

seq1  TATGAGACTAGAGCACACCTCAGTGCTCCTCAAGGCTCTTAGGAACTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACTAGAGCACACCTCAGTGCTCCTCAAGGCTCTTAGGAACTTAG  650

seq1  TGATTCTCTTGCGGCAATAGGAATTC  676
      ||||||||||||||||||||||||||
seq2  TGATTCTCTTGCGGCAATAGGAATTC  676

seq1: chr7_72602597_72603746
seq2: B6Ng01-190N23.g_65_1204

seq1  GAATTCTTGAGAAGATGACCATAGAATGGGAAGTGGCTAACGTTTACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGAAGATGACCATAGAATGGGAAGTGGCTAACGTTTACTGG  50

seq1  GGCCACTATAACACCATGCCATGGACTGGAGGCCTTAAACAGCAAACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTATAACACCATGCCATGGACTGGAGGCCTTAAACAGCAAACATG  100

seq1  GATGTCTCTCAGGTCTAGAGGCCGGAAATCTAAGGTCAAGGCCGGAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTCTCAGGTCTAGAGGCCGGAAATCTAAGGTCAAGGCCGGAAGTC  150

seq1  CAAGGTCAAGGCTCTGGCAGGTGGGTGCCTGAGGAGTTCCTGTTTCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCAAGGCTCTGGCAGGTGGGTGCCTGAGGAGTTCCTGTTTCTGGT  200

seq1  GCTGACAGTAGCCTTCTTGGAAGGCCTTGAAATGGCTTGTCATTTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGTAGCCTTCTTGGAAGGCCTTGAAATGGCTTGTCATTTCTTGG  250

seq1  AGAGGACCAGGGGGCTCTGGGTGGTCTTCTGTTTCTCTAACCCCTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACCAGGGGGCTCTGGGTGGTCTTCTGTTTCTCTAACCCCTTTAGA  300

seq1  AGCAGTCCACCTGGCCGGGCGGTGGTGGCGCTCACCTTTAATCCCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCCACCTGGCCGGGCGGTGGTGGCGCTCACCTTTAATCCCAGCAC  350

seq1  TGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  400

seq1  AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAA  450

seq1  AAACAAAACAACAAAACAAAACAACAAAAAAAGAAGCAGTCCACCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAACAAAACAAAACAACAAAAAAAGAAGCAGTCCACCTCATG  500

seq1  AGCCAACTTCCCATCAAAGAACACACTGCCCATCACACTGGAGGTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTTCCCATCAAAGAACACACTGCCCATCACACTGGAGGTGAGGA  550

seq1  TTTCAACATAGTGTGAATGAACATAGACAGTTGTTGGAATTAAGTATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACATAGTGTGAATGAACATAGACAGTTGTTGGAATTAAGTATTAG  600

seq1  GTCATCCATATAGAGTTAGACACAATCTTTGCACAGAACTTATCACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCATATAGAGTTAGACACAATCTTTGCACAGAACTTATCACAGGG  650

seq1  TATCGTGACAGCTGTTCTAGAGACGACAGAACTGCTTGACATCTTCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTGACAGCTGTTCTAGAGACGACAGAACTGCTTGACATCTTCATTT  700

seq1  TGGTGGTGCTTAGACATGCGCATGTCAAACCTCTGAGATCCGTATGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCTTAGACATGCGCATGTCAAACCTCTGAGATCCGTATGCCCA  750

seq1  AAGAGGAGTGAAATCTGCGGCTGGTGACCTAAAGAATAGATTTCAACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTGAAATCTGCGGCTGGTGACCTAAAGAATAGATTTCAACAGC  800

seq1  AGCTGAATGTAATTTCATATGGTTAAGTGCTTCCACCTAGACAGCCTACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATGTAATTTCATATGGTTAAGTGCTTCCACCTAGACAGCCTACG  850

seq1  GGAGAACAGGAAGCAGAGATGAGCGGAGACTGACAGTAATAAGACAGTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGGAAGCAGAGATGAGCGGAGACTGACAGTAATAAGACAGTGT  900

seq1  CATAAACCAAAACCATTTCATCAAAGGCCTGAGAAAACAGTCTCTTCCCA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATAAACCAAAACCATTTCATCAAAGGCCTGAG-AAACAGTCTCTTCCCA  949

seq1  CAGTTTCAGCAAAGGAGGGTGAACAGGTGAGTGAGTGGGGCTACATCTCC  1000
      |||||||||||||||| |||| ||| ||||||||||||||||||||||||
seq2  CAGTTTCAGCAAAGGA-GGTG-ACA-GTGAGTGAGTGGGGCTACATCTCC  996

seq1  GAGCTGAGGAAGCCAGCAGC-TATGTAAACTCATTGCATGAAGGTAGCAG  1049
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  GAGCTGAGGAAGCCAGCAGCTTATGTAAACTCATTGCATGAA-GTAGCAG  1045

seq1  GAAGGGCAAAAGGTGGAGAATGTGAGATTCTAAAAGA-CTGGTAGGTCAA  1098
      |||||   || |||||||||||||||||||| ||||| ||||||| ||| 
seq2  GAAGG--CAAGGGTGGAGAATGTGAGATTCTTAAAGACCTGGTAGTTCA-  1092

seq1  CAAGCATTAGT-CTCTAGTATTAGCAAGTCCAGAAAGCATTTAAACAGAG  1147
        |||| |||| |||||||| |||||||||| ||| ||  ||||||||||
seq2  -CAGCA-TAGTCCTCTAGTA-TAGCAAGTCC-GAAGGC-GTTAAACAGAG  1137

seq1  GGG  1150
      |||
seq2  GGG  1140