BAC Information

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BAC

Clone NameB6Ng01-192D16
Chromosome7 (Build37)
Map Location 104,677,012 - 104,845,803
singlet/doubletdoublet
Overlap geneInts4, 1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14
Downstream geneAqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192D16.bB6Ng01-192D16.g
ACCGA015520GA015521
length1,1301,103
definitionB6Ng01-192D16.b B6Ng01-192D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,844,682 - 104,845,803)(104,677,012 - 104,678,116)
sequence
gaattccttccaggacctgcacatccaggagtcgggttcggctggttgtg
actccgccctgcgtgggcctgaagatggtccttccccccagcccccacaa
acacacacacttgaagcagaacatcccagctcattaaccaaacgtcgtaa
cccgtcacaatctgagctacatattccacgcagggaaatcgtctagttga
cacgaccattccgaaagctaggcccacggaaaaactaaccgaggctctgc
agactcaaaactcaacgtgaccacgcgccaggcttgcaggagacaggccg
gttcgcacaggtcgttagggagaaacgcgggctaggggacagaaccagcc
gagctcgggaggggacaatcccaccctgcccgcacaatagcgccggccgg
ctggtcggcgccccccaaccttacctctccgcgatgtaaagcgtgccggt
gccgagccccttcccgttcagcacagcctcggtgtctggctgctgcagcc
ggagcccgtcggccgacccaggcggcgggaagcttttgaggaagctcatt
gccggggaaagcatcgctccacgcgaaccgagagaggcgagtaccgcaat
cgcggctcgcacggagctgccccggaagcagtagtcgtagcccggaagaa
caactttctcagcgagggccttagcatgcggttgaccatagagacgggat
gttctaggcaactcagaggtccgcagcgagccggctggcttttgtcacgt
ggcatcggttcccctttcccgctcctctaaggatgcttagaataatcgag
tgttttctatgtgggttctctttgaaggtcataggagcaaaccccgagag
aggatgtataaaggaataccaagcctttcccaacaaaaagcgggaaggga
cccaggccccaggagtccctcgccgaaggaggactcacagaaataaaatc
caccacgcatctgggagatcccaagtctccggctgggtgcacgagtctac
cctgcttccgcctcgtcaggcctgtttctctttggggttcacaacagcca
ttaaccagactctagtcccacgtcgcggaagaagatcgagccgccccatc
cccacgagtccatgcccaccgagcacgaaa
gaattcaatagagtagaatattcagtagaatagaatagatcgatcatcag
gcaggattatgaatatgatcatgattataagtaatcttggcactagagag
gcaagacatgagaatcctaagtttgaggccagcctgggctacatactaca
taagaataccctttctgaagaaaagagcaggaaaacaaaagaaaaagaag
ccgctccccgagaacactgttccacgcagaagtgaatgaagctgggtcac
agacaagaatgcatagtcgtcagaggggtcggtagtaaaatctgtgcctg
ttagtgatagtgactgtagggaaattgagaaaaaggagaatgtgggagag
ctgcctgacttgtagttgggtgagtgacagggtgcatgacagtacactgg
acacaggtgcagagtctccactgtgaatagacagcttagggtgctcaggt
tagtgcggtggcctgtgagcaggccccagggctgacctgctgctgactcc
tgtttccagacagtcatctgtctgagcgccagctgcctgtctccgtctcc
cttaggtgaggcttgacttgctaaaagcagtaagagtgatggcgaggaag
cctgcgcgtggtacatttttaaagcaaagcagaaacacacatttcaatgc
tgtattggttttctcagttctgtgatggctgcatctgtctcttctttcat
ttgtctgagtaggccttgcaggaaaagctgtggaatgtggctgccccctt
gtatctaaagcagagtgatttggcctcagcagcagcaaaacaggtgagag
actcctcagacagatcagaggtcttcctacggcctgtctcctggcttctg
agattccaggctcttagttagaactatgcctgtgtgactgcaagcaccgg
gccttggagtcagggacttgggccgtctccacctgacgacgtgataaatt
gaacaagctatttgagtcttctgagtttcctcctctaataaaatgtgcag
tgaacagcatgatttcctagatcttttgtgtctataatattcccaggttg
tggacagtgtggtgcttgatcataagtgctacctggtgtaaggcctaaca
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104844682_104845803
seq2: B6Ng01-192D16.b_41_1170 (reverse)

seq1  TTTCGTGCTCG--TGGCAT-GACTCGTGGGGATGGGGC-GCTCGATC-TC  45
      |||||||||||   ||||| |||||||||||||||||| |||||||| ||
seq2  TTTCGTGCTCGGTGGGCATGGACTCGTGGGGATGGGGCGGCTCGATCTTC  50

seq1  TCCGGCGACGTGGGGACTAAGAGGTCTGGTAAATGGCTG-TGTGAA-CCC  93
      | | ||||||| |||||| ||| ||||||| |||||||| |||||| |||
seq2  TTCCGCGACGT-GGGACT-AGA-GTCTGGTTAATGGCTGTTGTGAACCCC  97

seq1  AAGGAG-AACAGGCCTGACGAGGCGGAAGCAGGGTAGACTCGTGCACCCA  142
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAACAGGCCTGACGAGGCGGAAGCAGGGTAGACTCGTGCACCCA  147

seq1  GCCGGGAGACTTGGGATCT-CCAGATGCGT-GTGGATTTTATTTCTGTGA  190
      ||| ||||||||||||||| |||||||||| |||||||||||||||||||
seq2  GCC-GGAGACTTGGGATCTCCCAGATGCGTGGTGGATTTTATTTCTGTGA  196

seq1  GTCCTCCTTCGGCGAGGGACTCCTGGGGCCTGGGTCCCTTCCCGCTTTTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTTCGGCGAGGGACTCCTGGGGCCTGGGTCCCTTCCCGCTTTTT  246

seq1  GTTGGGAAAGGCTTGGTATTCC-TTATACATCCTCTCTCGGGGTTTGCTC  289
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTGGGAAAGGCTTGGTATTCCTTTATACATCCTCTCTCGGGGTTTGCTC  296

seq1  CTATGACCTTCAAAGAGAA-CCACATAGAAAACACTCGATTATTCTAAGC  338
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTATGACCTTCAAAGAGAACCCACATAGAAAACACTCGATTATTCTAAGC  346

seq1  ATCCTTAGAGGAGCGGGAAAGGGGAACCGATGCCACGTGACAAAAGCCAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGAGGAGCGGGAAAGGGGAACCGATGCCACGTGACAAAAGCCAG  396

seq1  CCGGCTCGCTGCGGACCTCTGAGTTGCCTAGAACATCCCGTCTCTATGGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCGCTGCGGACCTCTGAGTTGCCTAGAACATCCCGTCTCTATGGT  446

seq1  CAACCGCATGCTAAGGCCCTCGCTGAGAAAGTTGTTCTTCCGGGCTACGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCGCATGCTAAGGCCCTCGCTGAGAAAGTTGTTCTTCCGGGCTACGA  496

seq1  CTACTGCTTCCGGGGCAGCTCCGTGCGAGCCGCGATTGCGGTACTCGCCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTTCCGGGGCAGCTCCGTGCGAGCCGCGATTGCGGTACTCGCCT  546

seq1  CTCTCGGTTCGCGTGGAGCGATGCTTTCCCCGGCAATGAGCTTCCTCAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGTTCGCGTGGAGCGATGCTTTCCCCGGCAATGAGCTTCCTCAAA  596

seq1  AGCTTCCCGCCGCCTGGGTCGGCCGACGGGCTCCGGCTGCAGCAGCCAGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCGCCGCCTGGGTCGGCCGACGGGCTCCGGCTGCAGCAGCCAGA  646

seq1  CACCGAGGCTGTGCTGAACGGGAAGGGGCTCGGCACCGGCACGCTTTACA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGGCTGTGCTGAACGGGAAGGGGCTCGGCACCGGCACGCTTTACA  696

seq1  TCGCGGAGAGGTAAGGTTGGGGGGCGCCGACCAGCCGGCCGGCGCTATTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGGAGAGGTAAGGTTGGGGGGCGCCGACCAGCCGGCCGGCGCTATTG  746

seq1  TGCGGGCAGGGTGGGATTGTCCCCTCCCGAGCTCGGCTGGTTCTGTCCCC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGCAGGGTGGGATTGTCCCCTCCCGAGCTCGGCTGGTTCTGTCCCC  796

seq1  TAGCCCGCGTTTCTCCCTAACGACCTGTGCGAACCGGCCTGTCTCCTGCA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCGCGTTTCTCCCTAACGACCTGTGCGAACCGGCCTGTCTCCTGCA  846

seq1  AGCCTGGCGCGTGGTCACGTTGAGTTTTGAGTCTGCAGAGCCTCGGTTAG  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCGCGTGGTCACGTTGAGTTTTGAGTCTGCAGAGCCTCGGTTAG  896

seq1  TTTTTCCGTGGGCCTAGCTTTCGGAATGGTCGTGTCAACTAGACGATTTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCGTGGGCCTAGCTTTCGGAATGGTCGTGTCAACTAGACGATTTC  946

seq1  CCTGCGTGGAATATGTAGCTCAGATTGTGACGGGTTACGACGTTTGGTTA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGTGGAATATGTAGCTCAGATTGTGACGGGTTACGACGTTTGGTTA  996

seq1  ATGAGCTGGGATGTTCTGCTTCAAGTGTGTGTGTTTGTGGGGGCTGGGGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTGGGATGTTCTGCTTCAAGTGTGTGTGTTTGTGGGGGCTGGGGG  1046

seq1  GAAGGACCATCTTCAGGCCCACGCAGGGCGGAGTCACAACCAGCCGAACC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGACCATCTTCAGGCCCACGCAGGGCGGAGTCACAACCAGCCGAACC  1096

seq1  CGACTCCTGGATGTGCAGGTCCTGGAAGGAATTC  1122
      ||||||||||||||||||||||||||||||||||
seq2  CGACTCCTGGATGTGCAGGTCCTGGAAGGAATTC  1130

seq1: chr7_104677012_104678116
seq2: B6Ng01-192D16.g_64_1166

seq1  GAATTCAATAGAGTAGAATATTCAGTAGAATAGAATAGATCGATCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAGTAGAATATTCAGTAGAATAGAATAGATCGATCATCAG  50

seq1  GCAGGATTATGAATATGATCATGATTATAAGTAATCTTGGCACTAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTATGAATATGATCATGATTATAAGTAATCTTGGCACTAGAGAG  100

seq1  GCAAGACATGAGAATCCTAAGTTTGAGGCCAGCCTGGGCTACATACTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACATGAGAATCCTAAGTTTGAGGCCAGCCTGGGCTACATACTACA  150

seq1  TAAGAATACCCTTTCTGAAGAAAAGAGCAGGAAAACAAAAGAAAAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATACCCTTTCTGAAGAAAAGAGCAGGAAAACAAAAGAAAAAGAAG  200

seq1  CCGCTCCCCGAGAACACTGTTCCACGCAGAAGTGAATGAAGCTGGGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCCCGAGAACACTGTTCCACGCAGAAGTGAATGAAGCTGGGTCAC  250

seq1  AGACAAGAATGCATAGTCGTCAGAGGGGTCGGTAGTAAAATCTGTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGAATGCATAGTCGTCAGAGGGGTCGGTAGTAAAATCTGTGCCTG  300

seq1  TTAGTGATAGTGACTGTAGGGAAATTGAGAAAAAGGAGAATGTGGGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATAGTGACTGTAGGGAAATTGAGAAAAAGGAGAATGTGGGAGAG  350

seq1  CTGCCTGACTTGTAGTTGGGTGAGTGACAGGGTGCATGACAGTACACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGACTTGTAGTTGGGTGAGTGACAGGGTGCATGACAGTACACTGG  400

seq1  ACACAGGTGCAGAGTCTCCACTGTGAATAGACAGCTTAGGGTGCTCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGTGCAGAGTCTCCACTGTGAATAGACAGCTTAGGGTGCTCAGGT  450

seq1  TAGTGCGGTGGCCTGTGAGCAGGCCCCAGGGCTGACCTGCTGCTGACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCGGTGGCCTGTGAGCAGGCCCCAGGGCTGACCTGCTGCTGACTCC  500

seq1  TGTTTCCAGACAGTCATCTGTCTGAGCGCCAGCTGCCTGTCTCCGTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAGACAGTCATCTGTCTGAGCGCCAGCTGCCTGTCTCCGTCTCC  550

seq1  CTTAGGTGAGGCTTGACTTGCTAAAAGCAGTAAGAGTGATGGCGAGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTGAGGCTTGACTTGCTAAAAGCAGTAAGAGTGATGGCGAGGAAG  600

seq1  CCTGCGCGTGGTACATTTTTAAAGCAAAGCAGAAACACACATTTCAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGCGTGGTACATTTTTAAAGCAAAGCAGAAACACACATTTCAATGC  650

seq1  TGTATTGGTTTTCTCAGTTCTGTGATGGCTGCATCTGTCTCTTCTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGGTTTTCTCAGTTCTGTGATGGCTGCATCTGTCTCTTCTTTCAT  700

seq1  TTGTCTGAGTAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGAGTAGGCCTTGCAGGAAAAGCTGTGGAATGTGGCTGCCCCCTT  750

seq1  GTATCTAAAGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAGGTGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAAAGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAGGTGAGAG  800

seq1  ACTCCTCAGACAGATCAGAGGTCTTCCTACGGCCTGTCTCCTGGCTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCAGACAGATCAGAGGTCTTCCTACGGCCTGTCTCCTGGCTTCTG  850

seq1  AGATTCCAGGCTCTTAGTTAGAACTATGCCTGTGTGACTGCAAGCACCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGGCTCTTAGTTAGAACTATGCCTGTGTGACTGCAAGCACCGG  900

seq1  GCCTTGGAGTCAGGGGACTTGGGCCGTCTCCACCTGACGACGTGATAAAT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGAGTCA-GGGACTTGGGCCGTCTCCACCTGACGACGTGATAAAT  949

seq1  TGAACAAGCTATTTGAGTCTCTTGGAGTTTCCTCCTCT-ATAAAATGTGG  999
      |||||||||||||||||||| |  |||||||||||||| ||||||||| |
seq2  TGAACAAGCTATTTGAGTCT-TCTGAGTTTCCTCCTCTAATAAAATGT-G  997

seq1  CAGTTGAACAGCATGATTTCCTAGATTCCTTTGTGTTCTAT-ATATTTCC  1048
      ||| ||||||||||||||||||||| || |||||| ||||| ||||| ||
seq2  CAG-TGAACAGCATGATTTCCTAGA-TCTTTTGTG-TCTATAATATTCCC  1044

seq1  AGTTTGTGGGCCAGTGTGGTGGCTGGTCAT-AGTGCTTACT-GTGT-AGG  1095
      || |||| || ||||||||||  || |||| ||||||  || |||| |||
seq2  AGGTTGT-GGACAGTGTGGTGCTTGATCATAAGTGCTACCTGGTGTAAGG  1093

seq1  CCTAACACTG  1105
      ||||||||||
seq2  CCTAACACTG  1103