BAC Information

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BAC

Clone NameB6Ng01-193F12
Chromosome7 (Build37)
Map Location 3,315,997 - 3,316,855
singlet/doubletsinglet
Overlap genePrkcc
Upstream geneLOC100041028, LOC627003, EG664817, Speer9-ps1, AU018091, LOC100041503, Nlrp12, GA_x5J8B7W3939-136239-135295, LOC384710, Myadm
Downstream geneCacng7, LOC672553, Cacng8, Cacng6, LOC100041095, 9930022N03Rik, LOC100041109, Oscar, Ndufa3, Tfpt, Prpf31, Cnot3, Leng1, Tmc4, Leng4, Tsen34, Rps9, Lilrb3, Pira1, LOC100041137, LOC100041146, Pira2, LOC675749, LOC100038908, LOC100038909, Pira11, Pira3, LOC100041186, LOC664841, Lair1, Ttyh1, Leng8, Leng9, Cdc42ep5, LOC384521, EG232801, Ncr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193F12.bB6Ng01-193F12.g
ACCGA016342GA016343
length1,244862
definitionB6Ng01-193F12.b B6Ng01-193F12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatatctggtactataaacacagtcaaacatccgtggctggctgg
gtgctgttacctttaattttaggattcaggaggcagaggtaggtaggact
ctgaatctgaggctagcctggtctataggaagctccaggccagccagggc
tacataatgaaaccctgtcttgaaactaaataaaaaagataaaacatgac
ttctcatccactttcctctttcagtgctgggatgttgtctggcttgagcc
tgtgcagcaggtcttatgtatgctgtcaaggtctctgaaagtccttatgt
gtgtcagggtttttttccccctctgtctggaagacactgtgttagagtta
tccagcacctctggcttttgcagtcttccctccccttcttccaaataggt
tcctgagccttgaaggagggatttcatgaagacatcccgtttaggcctga
gtgttccaagatctttcacatcagtccctcacagctacaaacctttcatc
ctgcagtggttaccggcctgtaagacatactggtgcagccatgacataaa
gcttatgggagtagccaaccactttttaaaaactatatttaaggcccact
ccatgagatggggcccatatctgacactgttagcctgtcattgcagaagg
cctgggcttggtttccagcaccaacattaggaggttcacagtggcctgta
attcccgcttcatgggatctgacagctcttctggcctctgtacacacaca
tacacacacacacacacacacacacacacacacctttttaagttaataaa
gaaatgggtgtgatcatttctatcaatttcccccatcatccatctatcaa
ttttcccccatcatccattcccttgggtacaaatcttctgtctggttggt
tttgagtttgtgttctggaactctctatgtagagcaggctggcctcaaac
tcacagaggttctgtgtgcttctgccttcccgagtgctgagattaaaagc
gtggaccaccattgcccagcaaacttgaacctaaatctttgccttgttga
ccttgagcaccaatagaagggtgtgtctaatggacctttcataaggccat
ccttaaggtcggaaagacttcctagtcacttttttttatatttagtcaag
atgcagaaaggaagcacaattctgtcagcttcggctaattgtaatgcctt
tggccaaggtatgccgtctgatccatcgtcatgagatgtaggta
gaattctgctgataatatgtgagcttgcagtaagagtgcttccctaagaa
agggactgctgggtacaggtgtgaatgaagcaagacaatgagtgaagatc
cccagaggagggccttgcagcagagggtgggatgtgtgtgagcctctgag
gtaggagccaggcaggagctgggagcagcaaagacagtaaagttggatca
agggcagtgtgggaagggaaggaggcggcttcagagaggatgccttgtta
tctctcaagcggatgatggtttttcagccaagcaataaggaagaattctg
ggccgagctgtgttgtatatgattgtgagattaccccaggctggcctcaa
actcactatgtagctgaggctgacctgaaacttctgatcttcctgcctcc
ttctccctagtgctggggtcacagaatgtgtcacgttaccagtgtggact
aactgcttagttgatgactaccaatgattttatatgattgtgtgtggtat
tgtccacagctgtttccatgatcagtaagcaaccattagtattacaagtg
cagaccgattatgtgacagactctgggctgggttctggttgggtagaaca
gtagtgaaatgcacaagaatccttgatagccttggtggtacagacctgta
gtcccagcaccgaggaggctgaagcggaaggattggtatgagttcaaggc
tagtgttggctacataacgagttactgagctacaaaatgagtttcatgcc
aggagtgacagtgtgaggcgctctctctcaaaatggatgaaaagaaagaa
aagagagaaagaaaggaaggaaggaagggaaggaaggaaggaaggaacgt
aaggaatgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_3315997_3316855
seq2: B6Ng01-193F12.g_67_928

seq1  GAATTCTGCTGATAATATGTGAGCTTGCAGTAAGAGTGCTTCCCTAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGATAATATGTGAGCTTGCAGTAAGAGTGCTTCCCTAAGAA  50

seq1  AGGGACTGCTGGGTACAGGTGTGAATGAAGCAAGACAATGAGTGAAGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCTGGGTACAGGTGTGAATGAAGCAAGACAATGAGTGAAGATC  100

seq1  CCCAGAGGAGGGCCTTGCAGCAGAGGGTGGGATGTGTGTGAGCCTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGAGGGCCTTGCAGCAGAGGGTGGGATGTGTGTGAGCCTCTGAG  150

seq1  GTAGGAGCCAGGCAGGAGCTGGGAGCAGCAAAGACAGTAAAGTTGGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGCCAGGCAGGAGCTGGGAGCAGCAAAGACAGTAAAGTTGGATCA  200

seq1  AGGGCAGTGTGGGAAGGGAAGGAGGCGGCTTCAGAGAGGATGCCTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGTGTGGGAAGGGAAGGAGGCGGCTTCAGAGAGGATGCCTTGTTA  250

seq1  TCTCTCAAGCGGATGATGGTTTTTCAGCCAAGCAATAAGGAAGAATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAGCGGATGATGGTTTTTCAGCCAAGCAATAAGGAAGAATTCTG  300

seq1  GGCCGAGCTGTGTTGTATATGATTGTGAGATTACCCCAGGCTGGCCTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGCTGTGTTGTATATGATTGTGAGATTACCCCAGGCTGGCCTCAA  350

seq1  ACTCACTATGTAGCTGAGGCTGACCTGAAACTTCTGATCTTCCTGCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTATGTAGCTGAGGCTGACCTGAAACTTCTGATCTTCCTGCCTCC  400

seq1  TTCTCCCTAGTGCTGGGGTCACAGAATGTGTCACGTTACCAGTGTGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTAGTGCTGGGGTCACAGAATGTGTCACGTTACCAGTGTGGACT  450

seq1  AACTGCTTAGTTGATGACTACCAATGATTTTATATGATTGTGTGTGGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTAGTTGATGACTACCAATGATTTTATATGATTGTGTGTGGTAT  500

seq1  TGTCCACAGCTGTTTCCATGATCAGTAAGCAACCATTAGTATTACAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAGCTGTTTCCATGATCAGTAAGCAACCATTAGTATTACAAGTG  550

seq1  CAGACCGATTATGTGACAGACTCTGGGCTGGGTTCTGGTTGGGTAGAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCGATTATGTGACAGACTCTGGGCTGGGTTCTGGTTGGGTAGAACA  600

seq1  GTAGTGAAATGCACAAGAATCCTTGATAGCCTTGGTGGTACAGACCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAAATGCACAAGAATCCTTGATAGCCTTGGTGGTACAGACCTGTA  650

seq1  GTCCCAGCACCGAGGAGGCTGAAGCGGAAGGATTGGTATGAGTTCAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCACCGAGGAGGCTGAAGCGGAAGGATTGGTATGAGTTCAAGGC  700

seq1  TAGTGTTGGCTACATAACGAGTTACTGAGCTACAAAATGAGTTTCATGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGGCTACATAACGAGTTACTGAGCTACAAAATGAGTTTCATGCC  750

seq1  AGGAGTGACAGTGTGAGGCGCTCTCTCTCAAAATGGATGAAAAGAAAG-A  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGAGTGACAGTGTGAGGCGCTCTCTCTCAAAATGGATGAAAAGAAAGAA  800

seq1  AAGAGAGAAAGAAAGGAAGGAAGGAA-GGAAGGAAGGAAGGAAGGAA-GG  847
      |||||||||||||||||||||||||| |||||||||||||||||||| | 
seq2  AAGAGAGAAAGAAAGGAAGGAAGGAAGGGAAGGAAGGAAGGAAGGAACGT  850

seq1  AAGGAAGGAAGA  859
      |||||| |||||
seq2  AAGGAATGAAGA  862