BAC Information

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BAC

Clone NameB6Ng01-194D13
Chromosome7 (Build37)
Map Location 149,313,336 - 149,314,459
singlet/doubletsinglet
Overlap genenone
Upstream genePtdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728
Downstream geneEG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194D13.bB6Ng01-194D13.g
ACCGA016975GA016976
length1,1351,190
definitionB6Ng01-194D13.b B6Ng01-194D13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcaggcagaagaaatatcaagacaactaccctgagaaagcagg
ttgaaaaattaaatcagaaatacaaaaatgtatttggtcagctttacaga
attaggggcaaaaagcaaatagagtgagctagggcatagcccacaagact
cagagcctgtggacacagaacatctaggtgagctgacttgacagacatcg
gtacatctggggcgagcaggcttgctatcatctagaaagccccaaagagg
ggagaacagatgttctactgactgtgatagagtcatctcacgctaggcct
gaagcagaggcttgtagaattttaggcctgctgcttcactgacttcaggg
cattttcctggagattgccttaaatcatagagcgtcagacattgttttca
catgtcctctcttgctggcatcatgttatcagcttcctaagagagaggtg
aaaatcaaagaggctacacagacattagctgtttttggagtttttttgtt
tttgtttttgttttgttttgtttttttagatctttctctttctttcttcc
tttctttcttccttccttccttccttccttccttccttcctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttcttga
tttattcatttgttttatgtaagtacactgtagctgtcttcagacccacc
agaagagggcattgaatcccattacagatggttgtgagccaccatgtggt
tgctgaggacttgaactcaggacctctggaagagcagccagtgctcttaa
ctgctgagccatctctccagccccagatgttaggtttttaagggaagtaa
caagcaatttgaggatgaaagtgaaaaaggacagggtcacttgaattaaa
gagcacttcagggtacaatgcatagccaggtgtccagctctgtaaccaag
tcagctgtgcaggtacaccaattgagtaaatacagggggcagaggtgcaa
aaccaagtcagccttgggggtgccaggtgcatcccttggggtagtccttc
tctattagaagggagttgttgtcgtaatctccctgagcttcaattttcgt
cctaagctcaacagaagaatagaaaatctaacact
gaattctgtttgttggacaggagcagaaatttgttcctctggctcacgtt
ctacttcgttttcacactcataatcttctccgccctcgctgttagtgtcc
gaggagaggtcggcctggggcctttctaaaggcccaatttctgcagaagc
agattcggcacgggtggctgggggctgtgtctccgccgtagaagtgggcg
ggtcgtagctagcagctctcgtggagcgagtaattacgggggaagccaat
gttttagtttttaccgctcgcggagctttcttttttacgccgcccgaggc
tgaggctgggggaggggcaaggatagtctcttttaaagaattttggagtg
aagcgagctctgtggaaaggcgggcgtactgttgctggagctctaaaact
tcttgtaatcctgctacctgagacgcgagcttgtctttagcatcaatgag
agtagggaccggcagcgcctggggccacggctcgggagcgcagattggtg
gcaggtaggacgaggcattgcagggaggagctgaagcgcccggcaatcgc
tcgggcttacggggacggactatctcttcctctaaagtgtctgtgtcccc
agaaattaaagggctttcagccaaagattttttaaattctagattgatca
gtggcgggtcagcaggcaatgcgcttaccgggatatgggggtagagagca
gtctgcaggacttcgggcctgtctgcagctattggaggctttttagtagg
gagggagctctctgaagcttccagagacaggggacagaggcaatattctg
ccactgacaaaggctgctgtttctctggatcatcaactgcactttgtatt
aaatcacggattagactccaataagtaaatatatttgcaggaatagcatc
ggggtcctgctttgccaaaatttcacttaattctcttcctactcttatcc
attttcttacatgattctctgccgccatctataataaccatggacctgcc
tggttcttatgaaataaaaagtttatcaaatctttcttttacctctaact
ctcttccctgagggcacctttaggcttttaaagctgctcttagaaagcct
agtccattctatggaatgaatcacttaccaggatctctcggtgactcgtg
agcagtccttcacctctatcgtggggtcccctgcagaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149313336_149314459
seq2: B6Ng01-194D13.b_49_1183

seq1  GAATTCATCAGGCAGAAGAAATATCAAGACAACTACCCTGAGAAAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGGCAGAAGAAATATCAAGACAACTACCCTGAGAAAGCAGG  50

seq1  TTGAAAAATTAAATCAGAAATACAAAAATGTATTTGGTCAGCTTTACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAATTAAATCAGAAATACAAAAATGTATTTGGTCAGCTTTACAGA  100

seq1  ATTAGGGGCAAAAAGCAAATAGAGTGAGCTAGGGCATAGCCCACAAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGCAAAAAGCAAATAGAGTGAGCTAGGGCATAGCCCACAAGACT  150

seq1  CAGAGCCTGTGGACACAGAACATCTAGGTGAGCTGACTTGACAGACATCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTGTGGACACAGAACATCTAGGTGAGCTGACTTGACAGACATCG  200

seq1  GTACATCTGGGGCGAGCAGGCTTGCTATCATCTAGAAAGCCCCAAAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTGGGGCGAGCAGGCTTGCTATCATCTAGAAAGCCCCAAAGAGG  250

seq1  GGAGAACAGATGTTCTACTGACTGTGATAGAGTCATCTCACGCTAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGATGTTCTACTGACTGTGATAGAGTCATCTCACGCTAGGCCT  300

seq1  GAAGCAGAGGCTTGTAGAATTTTAGGCCTGCTGCTTCACTGACTTCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGCTTGTAGAATTTTAGGCCTGCTGCTTCACTGACTTCAGGG  350

seq1  CATTTTCCTGGAGATTGCCTTAAATCATAGAGCGTCAGACATTGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCCTGGAGATTGCCTTAAATCATAGAGCGTCAGACATTGTTTTCA  400

seq1  CATGTCCTCTCTTGCTGGCATCATGTTATCAGCTTCCTAAGAGAGAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCTCTTGCTGGCATCATGTTATCAGCTTCCTAAGAGAGAGGTG  450

seq1  AAAATCAAAGAGGCTACACAGACATTAGCTGTTTTTGGAGTTTTTTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAGAGGCTACACAGACATTAGCTGTTTTTGGAGTTTTTTTGTT  500

seq1  TTTGTTTTTGTTTTGTTTTGTTTTTTTAGATCTTTCTCTTTCTTTCTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTGTTTTGTTTTTTTAGATCTTTCTCTTTCTTTCTTCC  550

seq1  TTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTT  600

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTGA  650

seq1  TTTATTCATTTGTTTTATGTAAGTACACTGTAGCTGTCTTCAGACCCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATTTGTTTTATGTAAGTACACTGTAGCTGTCTTCAGACCCACC  700

seq1  AGAAGAGGGCATTGAATCCCATTACAGATGGTTGTGAGCCACCATGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGCATTGAATCCCATTACAGATGGTTGTGAGCCACCATGTGGT  750

seq1  TGCTGAGGACTTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGGACTTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAA  800

seq1  CTGCTGAGCCATCTCTCCAGCCCCAGATGTTAGGTTTTTAAGGGAAGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCCATCTCTCCAGCCCCAGATGTTAGGTTTTTAAGGGAAGTAA  850

seq1  CAAGCAATTTGAGGATGAAAGTGAAAAAGGACAGGGTCACTTGAATTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAATTTGAGGATGAAAGTGAAAAAGGACAGGGTCACTTGAATTAAA  900

seq1  GAAGCACTTCAGGGTACAATGCATAGCCAGGTGTCCAGCTCTGTAACCAA  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGCACTTCAGGGTACAATGCATAGCCAGGTGTCCAGCTCTGTAACCAA  949

seq1  GTCAGCTGTGCAGGTACA-CAATTGAGTAAATACA-GGGGCAGAGGTGCA  998
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  GTCAGCTGTGCAGGTACACCAATTGAGTAAATACAGGGGGCAGAGGTGCA  999

seq1  AAACCAAGTCAGCCTT-GGGGTG-CAGGTGCATCCC-TGGGGTAGTCCCT  1045
      |||||||||||||||| |||||| |||||||||||| ||||||||||| |
seq2  AAACCAAGTCAGCCTTGGGGGTGCCAGGTGCATCCCTTGGGGTAGTCCTT  1049

seq1  CTCTATTAG-AGGGAGTTGTTGTCCGTATCTCCCTGAGCTTCAA-TTTCG  1093
      ||||||||| ||||||||||||||   ||||||||||||||||| |||||
seq2  CTCTATTAGAAGGGAGTTGTTGTCGTAATCTCCCTGAGCTTCAATTTTCG  1099

seq1  TCCTAAAGTCAACA----AAGATGAAATCT-ACACT  1124
      ||||||  ||||||    || |  |||||| |||||
seq2  TCCTAAGCTCAACAGAAGAATAGAAAATCTAACACT  1135