BAC Information

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BAC

Clone NameB6Ng01-194D20
Chromosome7 (Build37)
Map Location 19,242,917 - 19,317,539
singlet/doubletdoublet
Overlap geneEG434540, BC050099
Upstream geneLOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21
Downstream geneLOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194D20.bB6Ng01-194D20.g
ACCGA016989GA016990
length1,1771,125
definitionB6Ng01-194D20.b B6Ng01-194D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,316,351 - 19,317,539)(19,242,917 - 19,244,053)
sequence
gaattcactgaggtaaaaccaggacaattcagacacaaatatttggtggt
atttatagatactttttcaagatagactgagactttcccaactaaacata
aactgtacagatgataacgaagaaactactgaaagaaattcttccaagat
tccgtttttctaagtttacagggtcagacattgcacttatatttgtgtcc
ttagatagaaattagctcattatttggggattgattggaaacttcattgt
gcttacagactctggagttcaagacaagtacacaagaatgaacagaaccc
taaagagactttaactaagttgacactagagactgacagtaactgagtga
cttctccccttcatcctttatagagtacagaactccccatattagatagg
actcaccttttaaagttatgtttggttttcctattggcagaagttatttc
agaaactcatgattgctaactcttacacgatcttgtagatgtccaatagg
tacataagtgtgttttccttgaattttcagctttccataaaagaggttca
cctccagactccaccaactttagcccggagattgagttctagtcaagaga
cactgttgagtgtcatcagagcttcacagaaaggatccctgtgctactga
gttgcagggtggattcactgcacatctgtttccagttgaagaagaccatg
ggcagcaggaggagaattcagcttcaagactccctcctgtctcccactga
tgggcccccacccatgccctggggacaccacaaagactgttactgttact
gttttcatgaagcttcaggaagtcaggtgatagagacttcaggtcccaag
agaaaggggggatgagatgccaaagcttttaagaagagactccattttag
agaacctaaactaagtttgaactcaggtaaactaacagctggtatatagc
atggtctctaaattgcccccaacaaaacctgagcctagttcctgtctcta
ggctaatctccacaacacaaggtctccaggtcattcccccaacatgtata
cacccccaggatacaactgacccctgcctacaccacattggggggtgtgg
gagcagagtaagtttctgaaattgaacttctcaaccagtcaattagttaa
gtccaacatctctcaattagatgcttg
gaattcttcagaatacttgagagactcgtggcaaagttctggagttagac
ctaactgtccacttgttttcaattcttggacaagatgtccccttaagcag
ctgatgaccaagattaacatcagcttctccctgattcacagacacctggg
aaggttccagggttggaacactgtatacgtgcctggagacagagaacttg
tgcttcccatctatcacctctggactgtgtgatgctcatgtggccactgt
gttccctgggtcgcagtttcccagcaacagcacaatgaagcgacaaaata
ttacagtctcaacaaatagccttaaatatgaacaagagcctgacactggg
gcaggatggctgtccacatcagcagggtctgctaccatttgctccaagga
gaggattctttagagttactccctgagaacttgaatcatcaagggggacc
tatgtcctctatccctctcctggagaccgtgaccatcctgtgaaatctca
tgagccatcagaacagttacctgatggcttgggcacctgtgcagctgtgt
gctcaattctgagtcaaagaagaagatgaccagtgaccctgcagcattat
gagttggctgtgctgtgtgttggctgagcacagttcttgctggtcttcct
gggtcagctctgtcctttgtctggaagattccccatcaacaatcctgtct
tgtactatgggagatgacaggagggaggagactttcagattccctagaga
gaggggtcttctcagacagaagaagcagagcagggtctagggagggagat
caaggttagtggggacaggaatggaaagcagactcctaggcaaggtctcc
tagctcaaggaaacagtggtcctaatgttgagtgtacaacatgatatcgc
cccctgtagttctctgcgagactgtagtctcatgcctagggctacagcag
ggggttcaacaccacaaatatgacctgccctgatcccttctgcacaggtg
ggactcaggaccatcattcttgctcactggctctgcagactcatttcact
agtgtaagtgagactaagccaggcttcaggttctcctgtcagtcaggact
aaggttattgaaggtgcaatccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19316351_19317539
seq2: B6Ng01-194D20.b_49_1225 (reverse)

seq1  CAAGCATCTAAATGGAGAGATGTTGTGGCCTTTAACATAATTGGCTGGTT  50
      ||||||||| ||| |||||||||  ||| | ||||| |||||| ||||||
seq2  CAAGCATCT-AATTGAGAGATGT--TGGAC-TTAAC-TAATTGACTGGTT  45

seq1  TTGAGAGTC-ATATCAGAAACTTAACTTCTGCTC---CACACCCCATTGG  96
        ||   || || |||||||||||   |||||||   ||| ||||| | |
seq2  GAGAAGTTCAATTTCAGAAACTTA--CTCTGCTCCCACACCCCCCAAT-G  92

seq1  TGGTTGTTAGGCAAGGGGTCAGTTTGTATCCT-GGGGTGTATACATGTTG  145
      ||||   ||||| ||||||||| ||||||||| |||||||||||||||| 
seq2  TGGT--GTAGGC-AGGGGTCAG-TTGTATCCTGGGGGTGTATACATGTT-  137

seq1  GGGGGAATGACCTGGAGACCCTTGTGTTGTTGGAGATTAGCCTAGAGACA  195
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GGGGGAATGACCTGGAGA-CCTTGTGTTG-TGGAGATTAGCCTAGAGACA  185

seq1  GGAACTAGGCTCAGGTTTTGTTGGGGGGCAATTTAGAGACCATGCTATAT  245
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAACTAGGCTCAGGTTTTGTT-GGGGGCAATTTAGAGACCATGCTATAT  234

seq1  ACCAGCTTGTTAGTTTACCTGAGTTCAAACTTAGTTTAGGTTCTCTAAAA  295
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGC-TGTTAGTTTACCTGAGTTCAAACTTAGTTTAGGTTCTCTAAAA  283

seq1  TGGAGTCTCTTCTTAAAAGCTTTGGCATCTCATCCCCCCTTTCTCTTGGG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCTCTTCTTAAAAGCTTTGGCATCTCATCCCCCCTTTCTCTTGGG  333

seq1  ACCTGAAGTCTCTATCACCTGACTTCCTGAAGCTTCATGAAAACAGTAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGTCTCTATCACCTGACTTCCTGAAGCTTCATGAAAACAGTAAC  383

seq1  AGTAACAGTCTTTGTGGTGTCCCCAGGGCATGGGTGGGGGCCCATCAGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACAGTCTTTGTGGTGTCCCCAGGGCATGGGTGGGGGCCCATCAGTG  433

seq1  GGAGACAGGAGGGAGTCTTGAAGCTGAATTCTCCTCCTGCTGCCCATGGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGAGGGAGTCTTGAAGCTGAATTCTCCTCCTGCTGCCCATGGT  483

seq1  CTTCTTCAACTGGAAACAGATGTGCAGTGAATCCACCCTGCAACTCAGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAACTGGAAACAGATGTGCAGTGAATCCACCCTGCAACTCAGTA  533

seq1  GCACAGGGATCCTTTCTGTGAAGCTCTGATGACACTCAACAGTGTCTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGATCCTTTCTGTGAAGCTCTGATGACACTCAACAGTGTCTCTT  583

seq1  GACTAGAACTCAATCTCCGGGCTAAAGTTGGTGGAGTCTGGAGGTGAACC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAACTCAATCTCCGGGCTAAAGTTGGTGGAGTCTGGAGGTGAACC  633

seq1  TCTTTTATGGAAAGCTGAAAATTCAAGGAAAACACACTTATGTACCTATT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATGGAAAGCTGAAAATTCAAGGAAAACACACTTATGTACCTATT  683

seq1  GGACATCTACAAGATCGTGTAAGAGTTAGCAATCATGAGTTTCTGAAATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCTACAAGATCGTGTAAGAGTTAGCAATCATGAGTTTCTGAAATA  733

seq1  ACTTCTGCCAATAGGAAAACCAAACATAACTTTAAAAGGTGAGTCCTATC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCCAATAGGAAAACCAAACATAACTTTAAAAGGTGAGTCCTATC  783

seq1  TAATATGGGGAGTTCTGTACTCTATAAAGGATGAAGGGGAGAAGTCACTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGGGGAGTTCTGTACTCTATAAAGGATGAAGGGGAGAAGTCACTC  833

seq1  AGTTACTGTCAGTCTCTAGTGTCAACTTAGTTAAAGTCTCTTTAGGGTTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGTCAGTCTCTAGTGTCAACTTAGTTAAAGTCTCTTTAGGGTTC  883

seq1  TGTTCATTCTTGTGTACTTGTCTTGAACTCCAGAGTCTGTAAGCACAATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTCTTGTGTACTTGTCTTGAACTCCAGAGTCTGTAAGCACAATG  933

seq1  AAGTTTCCAATCAATCCCCAAATAATGAGCTAATTTCTATCTAAGGACAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCAATCAATCCCCAAATAATGAGCTAATTTCTATCTAAGGACAC  983

seq1  AAATATAAGTGCAATGTCTGACCCTGTAAACTTAGAAAAACGGAATCTTG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGTGCAATGTCTGACCCTGTAAACTTAGAAAAACGGAATCTTG  1033

seq1  GAAGAATTTCTTTCAGTAGTTTCTTCGTTATCATCTGTACAGTTTATGTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATTTCTTTCAGTAGTTTCTTCGTTATCATCTGTACAGTTTATGTT  1083

seq1  TAGTTGGGAAAGTCTCAGTCTATCTTGAAAAAGTATCTATAAATACCACC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGGAAAGTCTCAGTCTATCTTGAAAAAGTATCTATAAATACCACC  1133

seq1  AAATATTTGTGTCTGAATTGTCCTGGTTTTACCTCAGTGAATTC  1189
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTGTCTGAATTGTCCTGGTTTTACCTCAGTGAATTC  1177

seq1: chr7_19242917_19244053
seq2: B6Ng01-194D20.g_64_1188

seq1  GAATTCTTCAGAATACTTGAGAGACTCGTGGCAAAGTTCTGGAGTTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAATACTTGAGAGACTCGTGGCAAAGTTCTGGAGTTAGAC  50

seq1  CTAACTGTCCACTTGTTTTCAATTCTTGGACAAGATGTCCCCTTAAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTGTCCACTTGTTTTCAATTCTTGGACAAGATGTCCCCTTAAGCAG  100

seq1  CTGATGACCAAGATTAACATCAGCTTCTCCCTGATTCACAGACACCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACCAAGATTAACATCAGCTTCTCCCTGATTCACAGACACCTGGG  150

seq1  AAGGTTCCAGGGTTGGAACACTGTATACGTGCCTGGAGACAGAGAACTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCCAGGGTTGGAACACTGTATACGTGCCTGGAGACAGAGAACTTG  200

seq1  TGCTTCCCATCTATCACCTCTGGACTGTGTGATGCTCATGTGGCCACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCCATCTATCACCTCTGGACTGTGTGATGCTCATGTGGCCACTGT  250

seq1  GTTCCCTGGGTCGCAGTTTCCCAGCAACAGCACAATGAAGCGACAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGGGTCGCAGTTTCCCAGCAACAGCACAATGAAGCGACAAAATA  300

seq1  TTACAGTCTCAACAAATAGCCTTAAATATGAACAAGAGCCTGACACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTCTCAACAAATAGCCTTAAATATGAACAAGAGCCTGACACTGGG  350

seq1  GCAGGATGGCTGTCCACATCAGCAGGGTCTGCTACCATTTGCTCCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATGGCTGTCCACATCAGCAGGGTCTGCTACCATTTGCTCCAAGGA  400

seq1  GAGGATTCTTTAGAGTTACTCCCTGAGAACTTGAATCATCAAGGGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCTTTAGAGTTACTCCCTGAGAACTTGAATCATCAAGGGGGACC  450

seq1  TATGTCCTCTATCCCTCTCCTGGAGACCGTGACCATCCTGTGAAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCTCTATCCCTCTCCTGGAGACCGTGACCATCCTGTGAAATCTCA  500

seq1  TGAGCCATCAGAACAGTTACCTGATGGCTTGGGCACCTGTGCAGCTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCAGAACAGTTACCTGATGGCTTGGGCACCTGTGCAGCTGTGT  550

seq1  GCTCAATTCTGAGTCAAAGAAGAAGATGACCAGTGACCCTGCAGCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTCTGAGTCAAAGAAGAAGATGACCAGTGACCCTGCAGCATTAT  600

seq1  GAGTTGGCTGTGCTGTGTGTTGGCTGAGCACAGTTCTTGCTGGTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGCTGTGCTGTGTGTTGGCTGAGCACAGTTCTTGCTGGTCTTCCT  650

seq1  GGGTCAGCTCTGTCCTTTGTCTGGAAGATTCCCCATCAACAATCCTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGCTCTGTCCTTTGTCTGGAAGATTCCCCATCAACAATCCTGTCT  700

seq1  TGTACTATGGGAGATGACAGGAGGGAGGAGACTTTCAGATTCCCTAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATGGGAGATGACAGGAGGGAGGAGACTTTCAGATTCCCTAGAGA  750

seq1  GAGGGGTCTTCTCAGACAGAAGAAGCAGAGCAGGGTCTAGGGAGGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCTTCTCAGACAGAAGAAGCAGAGCAGGGTCTAGGGAGGGAGAT  800

seq1  CAAGGTTAGTGGGGACAGGAATGGAAAGCAGACTCCTAGGCAAGGTCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTAGTGGGGACAGGAATGGAAAGCAGACTCCTAGGCAAGGTCTCC  850

seq1  TAGCTCAAGGAAACAGTGGTCCTAATGTTGAGTGTACAACATGATATCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAAGGAAACAGTGGTCCTAATGTTGAGTGTACAACATGATATCGC  900

seq1  CCCCTGTAGTTCTCTGCGAGAACTGTAGTCTCATGCCTAGGGCTACAGCA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCCTGTAGTTCTCTGCGAG-ACTGTAGTCTCATGCCTAGGGCTACAGCA  949

seq1  GGGGGGTTCAACACCACAAATATGACCTGCCCTGATCCCTTCTGCACAGG  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGGGTTCAACACCACAAATATGACCTGCCCTGATCCCTTCTGCACAGG  998

seq1  TGGGACTCAGGGACCATCATTC-TGCTCACTGGGCTCTGCAGAACTCCAT  1049
      ||||||||| |||||||||||| |||||||| |||||||||| ||| |||
seq2  TGGGACTCA-GGACCATCATTCTTGCTCACT-GGCTCTGCAG-ACT-CAT  1044

seq1  TTTCCAACTAGTGTAGGGTGAGACT-AGGCAGGCTTCCAGGTTCTCCCTG  1098
      ||    |||||||||  |||||||| || ||||||| |||||||| ||||
seq2  TT---CACTAGTGTA-AGTGAGACTAAGCCAGGCTT-CAGGTTCT-CCTG  1088

seq1  TCAAGTTCAGGACTAAAGTTAATGAAGTGTGC-ATCCAGA  1137
      |||   |||||||||| |||| ||||| |||| |||||||
seq2  TCA--GTCAGGACTAAGGTTATTGAAG-GTGCAATCCAGA  1125