BAC Information

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BAC

Clone NameB6Ng01-194K23
Chromosome7 (Build37)9 (Build37)
Map Location 5,454,785 - 5,455,21378,950,996 - 78,951,953
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTnnt1, Tnni3, 6030429G01Rik, Syt5, Ptprh, LOC669557, Tmem86b, Saps1, EG628211, 1500019G21Rik, Brsk1, BC022651, Suv420h2, Cox6b2, 4930401F20Rik, Il11, 4930572D21Rik, 2210411K11Rik, Rpl28, Ube2s, D430041B17Rik, Isoc2b, Isoc2a, LOC384524, Zfp628, Nat14, A430110N23Rik, LOC665049, Gm1079, Gm1078, Zfp579, Fiz1, Zfp524, 6430526N21Rik, 4632433K11Rik, Zfp784, Zfp580, Ccdc106, U2af2, Epn1, Rfpl4, Rasl2-9, EG665126, V1rd5, V1rd3, EG665150, Nlrp2, EG272350, V1rd4, EG665163, V1rd10, EG630071, EG665255
Downstream geneEG636697, EG636705, LOC636731, LOC673215, V1rd2, LOC100041627, LOC100041637, V1rd1, LOC100041647, V1rd11, LOC100041666, V1rd6, EG384525, EG269859, Nlrp4c, Zfp787, Zfp444, Galp, Zfp371, EG627821, Zfp667, Zfp583, LOC100042467, LOC100042459, Zfp78, Zfp28, LOC100042450, Olfr1344, GA_x5J8B7W3DQU-679632-679375, Olfr1336, Olfr1346, Olfr5, Olfr1347, Olfr1348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194K23.bB6Ng01-194K23.g
ACCGA017312GA017313
length985973
definitionB6Ng01-194K23.b B6Ng01-194K23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,454,785 - 5,455,213)(78,950,996 - 78,951,953)
sequence
gaattctttgtttagctctgtgccccattttttaatggggttatttggtt
ttctggagtccatcttctcttgagttctttatatattatattggatatta
gtcccctatctgatttaggattggtaaagatcctttcccaatctgttggt
ggcctttttgtcttattgacggtgtcttttgccttaaagtagcttaaaaa
ttttatgaggtcccatttgtcaattctttttttttcctgcattaatttat
taatttatttcctgacaattaattcaactgtaatcacagcatcactcatg
gctcatgtatacatcagcaacttccaggtgttctttcaacacatatgcac
attcctggccccaccatctacctatacacgtgagcacttatgtcaaatgt
ctcagtttctaagcttggaatatttatttatctagttgtgccatttcttt
ttttttaattaggtattttcctcgtttacattttcaatgctatcccaaag
gttccccatacccaccccccaaccccctacccacccactccccctttttg
gccctggcgttcccctgtactggggcatataaagtttgcaagtccaatgg
gcctctctttgcagtgatggccgactaggccatcttttgatacatatgca
gctaaagacaagagctcccgggtactggttagttcatattgttgttccgc
ctgtagggttgcagttccctttagctccttgggtaatttctctagctcct
ccattaggggccgtgtgacccatccaatagctgactgtgatcatccactt
ctgtgtttgctaggccccggcatagtctcacaagagagagctatatctgg
gtccttttcagcgaaatcttgctagtgtatgcaatggtgtcagcatttgg
gaagctgattatgggatggatccctgcatatggcaatcactagatggtcc
atcctttcgtcacagctacaattttgtctctgtaa
gaattcatattatctttccccacgatgtagcaaaggtagaaatcaaaatg
aaaaatctggaaccataaaaccacagtaaaagaaacaagttactttctta
ctgttcctgattgaatcaaggcgttgagaaaaatgagctatctccccaac
tctctttttattttgagacccaggccagcaatttgaacttgctaggtagc
ccaattgtatcttgaagttctgttcttccacatcagccactgacatatct
gggattgcaggcttgtgacatgagaccctaaaaacattttagtttttaac
aacaacaacaacaacaacaacaacaacaacaacaacaacaaccaaggaag
aaattgagatgtcagaggccattcatcagtggcaattctaatctttccac
agagtgttcaaaaaaatgaatgtttcgatctgctcatctgttttaggcaa
ttgcaaaagagatttcacacctttgaatttctcttcaggagacaagttct
taacaacttgttctttgcatcttttgccacctgaataggccaaggagttt
ctgtattgtcacattcaccttcccctttcctgtggggttcttccctcagt
ctacctgtttcttatagttttattggttgtagaaaaaagatcctggaccc
atccattaaatgtttgccttgtccataactgtaaaagaggagtcatgtga
tatttactactcagtacaatataggtcccttccttcagctctggagcagt
gttctttattcatatttctactacagatggaatacttaggcttatgggat
ggtacagtgtttatctgccacaccctatgttttccttctgtttcccagcc
aggtctttaaccaagtcaccatgtgttcacagagaactgtctttctcacg
ttcctggcattttcctagcccgtgtctattcctcatcttcagagctactc
tgcatgttgagtatttgtatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_5454785_5455213
seq2: B6Ng01-194K23.b_374_890

seq1  --------------------------------------------------  0
                                                        
seq2  TGTTCTTTCAACACATATGCACATTCCTGGCCCCACCATCTACCTATACA  50

seq1  -------------------TGT-TC--TTTCAACAC-----ATATTTTTT  23
                         ||| ||  |||| |  |     |||||| ||
seq2  CGTGAGCACTTATGTCAAATGTCTCAGTTTCTAAGCTTGGAATATTTATT  100

seq1  T------------CTTTTTTAATATTTTTATTAGGTATTTTCATCATTTA  61
      |            | ||| |  | |||| ||||||||||||| || ||||
seq2  TATCTAGTTGTGCCATTTCTTTTTTTTTAATTAGGTATTTTCCTCGTTTA  150

seq1  CATTTCCAAAGCTATCCCAAAAGTCCCCCATACCCTCCCGCCCACTCCCC  111
      ||||| ||| ||||||||||| || |||||||||| ||| ||||  ||||
seq2  CATTTTCAATGCTATCCCAAAGGTTCCCCATACCCACCC-CCCAACCCCC  199

seq1  TAACCACTCACTCCCACTTATTAGCCCTGGCTTTCCCCTGTCCTGGGGCA  161
      || |||| ||||||| ||| || |||||||| ||||||||| ||||||||
seq2  TACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCA  249

seq1  TATAAAATTTGCATGACCAATGGGCCTCTCTTTCCAGAGATGGCCAACTA  211
      |||||| |||||| | ||||||||||||||||| ||| ||||||| ||||
seq2  TATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCCGACTA  299

seq1  GGCCATCTTTTGATATGTATGCAGCTAGAGACGAGAGCTCCTGGGTACTG  261
      |||||||||||||||  |||||||||| |||| |||||||| ||||||||
seq2  GGCCATCTTTTGATACATATGCAGCTAAAGACAAGAGCTCCCGGGTACTG  349

seq1  GTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTC  311
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  GTTAGTTCATATTGTTGTTCCGCCTGTAGGGTTGCAGTTCCCTTTAGCTC  399

seq1  CTTGGGTACTTTCTCTAGCTCCTCCACTGGGGGCCCTGTGATCCATCCAA  361
      |||||||| ||||||||||||||||| | |||||| ||||| ||||||||
seq2  CTTGGGTAATTTCTCTAGCTCCTCCATTAGGGGCCGTGTGACCCATCCAA  449

seq1  TAGCTGACTGTGAGCATCCACTTCTGTATTTGCTAGGCCCTGGCATAGTC  411
      ||||||||||||| ||||||||||||| |||||||||||| |||||||||
seq2  TAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGTC  499

seq1  TCACAAGAGACAGCTATA  429
      |||||||||| |||||||
seq2  TCACAAGAGAGAGCTATA  517

seq1: chr9_78950996_78951953
seq2: B6Ng01-194K23.g_65_1022

seq1  GAATTCATATTATCTTTCCCCACGATGTAGCAAAGGTAGAAATCAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTATCTTTCCCCACGATGTAGCAAAGGTAGAAATCAAAATG  50

seq1  AAAAATCTGGAACCATAAAACCACAGTAAAAGAAACAAGTTACTTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGGAACCATAAAACCACAGTAAAAGAAACAAGTTACTTTCTTA  100

seq1  CTGTTCCTGATTGAATCAAGGCGTTGAGAAAAATGAGCTATCTCCCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTGATTGAATCAAGGCGTTGAGAAAAATGAGCTATCTCCCCAAC  150

seq1  TCTCTTTTTATTTTGAGACCCAGGCCAGCAATTTGAACTTGCTAGGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTATTTTGAGACCCAGGCCAGCAATTTGAACTTGCTAGGTAGC  200

seq1  CCAATTGTATCTTGAAGTTCTGTTCTTCCACATCAGCCACTGACATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGTATCTTGAAGTTCTGTTCTTCCACATCAGCCACTGACATATCT  250

seq1  GGGATTGCAGGCTTGTGACATGAGACCCTAAAAACATTTTAGTTTTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCAGGCTTGTGACATGAGACCCTAAAAACATTTTAGTTTTTAAC  300

seq1  AACAACAACAACAACAACAACAACAACAACAACAACAACAACCAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAACAACAACAACAACAACAACAACAACAACAACCAAGGAAG  350

seq1  AAATTGAGATGTCAGAGGCCATTCATCAGTGGCAATTCTAATCTTTCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGATGTCAGAGGCCATTCATCAGTGGCAATTCTAATCTTTCCAC  400

seq1  AGAGTGTTCAAAAAAATGAATGTTTCGATCTGCTCATCTGTTTTAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTCAAAAAAATGAATGTTTCGATCTGCTCATCTGTTTTAGGCAA  450

seq1  TTGCAAAAGAGATTTCACACCTTTGAATTTCTCTTCAGGAGACAAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAAGAGATTTCACACCTTTGAATTTCTCTTCAGGAGACAAGTTCT  500

seq1  TAACAACTTGTTCTTTGCATCTTTTGCCACCTGAATAGGCCAAGGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTTGTTCTTTGCATCTTTTGCCACCTGAATAGGCCAAGGAGTTT  550

seq1  CTGTATTGTCACATTCACCTTCCCCTTTCCTGTGGGGTTCTTCCCTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTGTCACATTCACCTTCCCCTTTCCTGTGGGGTTCTTCCCTCAGT  600

seq1  CTACCTGTTTCTTATAGTTTTATTGGTTGTAGAAAAAAGATCCTGGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTTTCTTATAGTTTTATTGGTTGTAGAAAAAAGATCCTGGACCC  650

seq1  ATCCATTAAATGTTTGCCTTGTCCATAACTGTAAAAGAGGAGTCATGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTAAATGTTTGCCTTGTCCATAACTGTAAAAGAGGAGTCATGTGA  700

seq1  TATTTACTACTCAGTACAATATAGGTCCCTTCCTTCAGCTCTGGAGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTACTCAGTACAATATAGGTCCCTTCCTTCAGCTCTGGAGCAGT  750

seq1  GTTCTTTATTCATATTTCTACTACAGATGGAATACTTAGGCTTATGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATTCATATTTCTACTACAGATGGAATACTTAGGCTTATGGGAT  800

seq1  GGTACAGTGTTTATCTGCCACACCCTATGTTTTCCTTCTGTTTCCCAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGTGTTTATCTGCCACACCCTATGTTTTCCTTCTGTTTCCCAGCC  850

seq1  AGGTCTTTAACCAAGTCACCATGTGTTCACAGAGAACTGTCTTTCTCACG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTAACCAAGTCACCATGTGTTCACAGAGAACTGTCTTTCTCACG  900

seq1  TTCCTGGCATTTTCCTAGCCCGTGTCTATTCCTCATCTTCAGAGCTACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCATTTTCCTAGCCCGTGTCTATTCCTCATCTTCAGAGCTACTC  950

seq1  TGCATGTT  958
      ||||||||
seq2  TGCATGTT  958