BAC Information

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BAC

Clone NameB6Ng01-194N12
Chromosome7 (Build37)
Map Location 148,177,015 - 148,314,247
singlet/doubletdoublet
Overlap geneLOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5
Upstream geneAdam8, Tubgcp2, Zfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1
Downstream genePtdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194N12.bB6Ng01-194N12.g
ACCGA017426GA017427
length995572
definitionB6Ng01-194N12.b B6Ng01-194N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,177,015 - 148,178,000)(148,313,680 - 148,314,247)
sequence
gaattccagggtggccctggatgaggatccgggttccctgaactcagtgg
atgatgaaatgggagttggacatcctcccctttcctctgcccacccacct
cccacagccttgctcgggtttattcctggttctgtgggtcgtgttcctgg
gcttaggggcagctgtgtgtgaaggcagatagtcaacaggaaggaggctc
agggctcgggcatcccctgccggtggttggcgacgttgggacacgtcctt
ttctagatccctcgctgaacactgttcagtgtcatcctcgcctcccctcc
aaatttgctggagttttctggaggccccagtattggtgcaaggattccag
tcctgtgttctaaggataaaatgtgtgagttccggaagtctattctagtg
cactgagtagggccacactgggcgtgtcttagagagactgaggccctaaa
ggcagtgaagacaggatcccagcgggaaagctgttgtcttacagtaggct
cccccagaataagtcctcgggagaaatcaaagcctgttccatttgcacca
gccagttgaaattaagttttgctaattattaaaaaaatattacacagaac
aaaagtaattggttgggctggaaagatggcttcgttaagagcaccgactg
ctcttccagaggttctgagttcaattcccagcaaccatatgatggctcag
aaccatctgtaatgggatctgatgccctcttctggtgtgtctgaagagag
caatggtgtactcatataaataaaattaataaatcttaaaaaaaaaaaag
gaattggtttcccacattatataatcacttttgctccacaaactaattta
caaatcttggggtttcccattttattttcacaaaatggctgaaaggcgac
ttggagagtgagccatcaatttaaaactcctcccctcagggttgtgctgg
ggatagtttgaaaccaatagttgtcgtacaggacacattaccccc
gaattccaggacagccagggctatacagaaaaaccctgtcttgaaaaaac
caaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaatctgcttgccagt
gtcaactgagtgctaggattaaaaacgtgtgcccctcctccgctccatcc
ctacttctcacttccttttaaagttcttttcttggcagagagaagaacct
agactctttaactcttggttaaattgtcagacagaggccagctaggctac
ctaagaccctgtttgaaaaaccaagaacaaacaagcaagcaagcagacag
aaatcaccagttactgcaaagggagatagagccaatagtccctttagtgt
actagtctattttgaggataagaaaccaaggccaccactgctggaggtat
ttgaactcattctcagtggttcatgtttctcccaagttttttaaattatc
gttttactaaggctcacaaataatttttttggttttttgagagtgttttt
ctgtgcagccctggctatcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148177015_148178000
seq2: B6Ng01-194N12.b_49_1042

seq1  GAATTCCAGGGTGGCCCTGGATGAGGATCCGGGTTCCCTGAACTCAGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTGGCCCTGGATGAGGATCCGGGTTCCCTGAACTCAGTGG  50

seq1  ATGATGAAATGGGAGTTGGACATCCTCCCCTTTCCTCTGCCCACCCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAATGGGAGTTGGACATCCTCCCCTTTCCTCTGCCCACCCACCT  100

seq1  CCCACAGCCTTGCTCGGGTTTATTCCTGGTTCTGTGGGTCGTGTTCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCTTGCTCGGGTTTATTCCTGGTTCTGTGGGTCGTGTTCCTGG  150

seq1  GCTTAGGGGCAGCTGTGTGTGAAGGCAGATAGTCAACAGGAAGGAGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGGGCAGCTGTGTGTGAAGGCAGATAGTCAACAGGAAGGAGGCTC  200

seq1  AGGGCTCGGGCATCCCCTGCCGGTGGTTGGCGACGTTGGGACACGTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCGGGCATCCCCTGCCGGTGGTTGGCGACGTTGGGACACGTCCTT  250

seq1  TTCTAGATCCCTCGCTGAACACTGTTCAGTGTCATCCTCGCCTCCCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATCCCTCGCTGAACACTGTTCAGTGTCATCCTCGCCTCCCCTCC  300

seq1  AAATTTGCTGGAGTTTTCTGGAGGCCCCAGTATTGGTGCAAGGATTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCTGGAGTTTTCTGGAGGCCCCAGTATTGGTGCAAGGATTCCAG  350

seq1  TCCTGTGTTCTAAGGATAAAATGTGTGAGTTCCGGAAGTCTATTCTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTCTAAGGATAAAATGTGTGAGTTCCGGAAGTCTATTCTAGTG  400

seq1  CACTGAGTAGGGCCACACTGGGCGTGTCTTAGAGAGACTGAGGCCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGTAGGGCCACACTGGGCGTGTCTTAGAGAGACTGAGGCCCTAAA  450

seq1  GGCAGTGAAGACAGGATCCCAGCGGGAAAGCTGTTGTCTTACAGTAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAAGACAGGATCCCAGCGGGAAAGCTGTTGTCTTACAGTAGGCT  500

seq1  CCCCCAGAATAAGTCCTCGGGAGAAATCAAAGCCTGTTCCATTTGCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGAATAAGTCCTCGGGAGAAATCAAAGCCTGTTCCATTTGCACCA  550

seq1  GCCAGTTGAAATTAAGTTTTGCTAATTATTAAAAAAATATTACACAGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTGAAATTAAGTTTTGCTAATTATTAAAAAAATATTACACAGAAC  600

seq1  AAAAGTAATTGGTTGGGCTGGAAAGATGGCTTCGTTAAGAGCACCGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAATTGGTTGGGCTGGAAAGATGGCTTCGTTAAGAGCACCGACTG  650

seq1  CTCTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACCATATGATGGCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACCATATGATGGCTCAG  700

seq1  AACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGAGAG  750

seq1  CAATGGTGTACTCATATAAATAAAATTAATAAATCTT-AAAAAAAAAAAG  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAATGGTGTACTCATATAAATAAAATTAATAAATCTTAAAAAAAAAAAAG  800

seq1  GAATTGGTTTCCAACATTATATAATCAC-TTTGCTCCACAAACTAATTTA  848
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  GAATTGGTTTCCCACATTATATAATCACTTTTGCTCCACAAACTAATTTA  850

seq1  C-AATCTTGGGGTTTCCCATTT--ATTTCACCAAATGGCTGAAAGGCGAC  895
      | ||||||||||||||||||||   |||||| ||||||||||||||||||
seq2  CAAATCTTGGGGTTTCCCATTTTATTTTCACAAAATGGCTGAAAGGCGAC  900

seq1  -TGGAGAGTGAGCCATCAA-TTAAAACTCCT-CCCTCAGGGTTGTGCTGG  942
       |||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TTGGAGAGTGAGCCATCAATTTAAAACTCCTCCCCTCAGGGTTGTGCTGG  950

seq1  GGATAGTTTGAAACCAATAATTGTCGTACAGGACACATAACCCC  986
      ||||||||||||||||||| |||||||||||||||||| |||||
seq2  GGATAGTTTGAAACCAATAGTTGTCGTACAGGACACATTACCCC  994

seq1: chr7_148313680_148314247
seq2: B6Ng01-194N12.g_66_637 (reverse)

seq1  CAGGACAGCCAGGGCTGCACAGAAAAACACTCTCAAAAAACCAAAAAAAT  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGCCAGGGCTGCACAGAAAAACACTCTCAAAAAACCAAAAAAAT  50

seq1  TATTTGTGAGCCTTAGTAAAACGATAATTTAAAAAACTTGGGAGAAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGAGCCTTAGTAAAACGATAATTTAAAAAACTTGGGAGAAACAT  100

seq1  GAACCACTGAGAATGAGTTCAAATACCTCCAGCAGTGGTGGCCTTGGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTGAGAATGAGTTCAAATACCTCCAGCAGTGGTGGCCTTGGTTT  150

seq1  CTTATCCTCAAAATAGACTAGTACACTAAAGGGACTATTGGCTCTATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCTCAAAATAGACTAGTACACTAAAGGGACTATTGGCTCTATCTC  200

seq1  CCTTTGCAGTAACTGGTGATTTCTGTCTGCTTGCTTGCTTGTTTGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAGTAACTGGTGATTTCTGTCTGCTTGCTTGCTTGTTTGTTCTT  250

seq1  GGTTTTTCAAACAGGGTCTTAGGTAGCCTAGCTGGCCTCTGTCTGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCAAACAGGGTCTTAGGTAGCCTAGCTGGCCTCTGTCTGACAAT  300

seq1  TTAACCAAGAGTTAAAGAGTCTAGGTTCTTCTCTCTGCCAAGAAAAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAGAGTTAAAGAGTCTAGGTTCTTCTCTCTGCCAAGAAAAGAAC  350

seq1  TTTAAAAGGAAGTGAGAAGTAGGGATGGAGCGGAGGAGGGGCACACGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGAAGTGAGAAGTAGGGATGGAGCGGAGGAGGGGCACACGTTT  400

seq1  TTAATCCTAGCACTCAGTTGACACTGGCAAGCAGA----TTTCTTTCTTT  446
      |||||||||||||||||||||||||||||||||||    |||||||||||
seq2  TTAATCCTAGCACTCAGTTGACACTGGCAAGCAGATTTCTTTCTTTCTTT  450

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  500

seq1  TTCTTTCTTTCTTTCTTTTTTGGTTTTTTCAAGACAGGGTTTTTCTGTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTTTTGGTTTTTTCAAGACAGGGTTTTTCTGTAT  550

seq1  AGCCCTGGCTGTCCTGGAATTC  568
      ||||||||||||||||||||||
seq2  AGCCCTGGCTGTCCTGGAATTC  572