BAC Information

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BAC

Clone NameB6Ng01-196E06
Chromosome7 (Build37)7 (Build37)
Map Location 10,475,169 - 10,476,2219,885,340 - 9,886,140
singlet/doubletsingletsinglet
Overlap geneLOC665625
Upstream geneLOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik
Downstream geneLOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1, EG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196E06.bB6Ng01-196E06.g
ACCGA018451GA018452
length994814
definitionB6Ng01-196E06.b B6Ng01-196E06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,475,169 - 10,476,221)(9,885,340 - 9,886,140)
sequence
gattccaggtcagccaggactatacaatgaaaccctgtctcaaaaaaaaa
aaaaaaatcaaaacaaaacaaaatcccaaaacaaaaaccaaagaaaacaa
aacaaaggcatcaatattttaagagccaaacgataatcagtttatatgtt
cttatagatatgttagtttatagtattatattcagactattgtcatgctt
attgaaaattgttaacctaattttacatcatgaatagagctataaaatac
taatttttataactttcttatttaaacatgaatcttaatgtattcatttg
ctgacaattaatatagaagtttgtaacaaaactcaagatcaccattcttt
agagcaccactctactataatgtgaccttgaagggaaaaagtccaatagg
gaagtaaaactcaagcataaagcaccacttaagacgacctgataaaaaag
ttgctatgcttcaggtagagaaagctcagaataagagctcagaatgtctg
gagaaagaatgatgtcaaaagataattccccattcctacattgcctgtag
taggtcatgcaatgatgttttaaatgtgagaaataaagaaagagttagga
tatccaacttgaaattagccctgataataaactaggtttggttttgtcta
tagcctccttaaaaagtataccagttgaatgttaggaatataattgcaat
ttttttcaaagcgctactatacatcaggcaataggtaaaaatataaattt
ctctctatataaacttgtattactactgttctccacataaatgtaaagta
tactgcataatgatgctatatgtcatgcagtgtgcgacatgacacaatat
gagggtatatactctcattatgtcagtatgctcctaaatgttataagagc
acaatcaataatattctgttgaatgatgaagtgacaaatcagtagaaaga
tgacatcagatcagcagtttgagattagctaaatttagcagcaa
gaattcttgactgaggaataccaaatggatgaaaagcacataaaagaatg
ttcaacatccttaatcaccagggaaatgcaaatcaaaacaaccgtgagat
tcaacctcacaccagtcagaatggctaagatcaaaaattcaggtgctagc
agatgctggcaaggatgtggtaaaagaggaacactcctccattgctgatg
ggattgcgagctggtacaaccactctggaaatcagtctggtagttcctca
gaaaattggcagaaatagtactaccggaggatccatcaatccctcccctg
tgcatatatccagaagacattccaacttgtaatatggacacatgctccac
tgtgttcatagcagccttatttataatagccagaaaattgaaaggaacct
ggatgaccctcaatagaggaatggatacagaaaatttattctaataactg
attctccccctaaaataacatttattctaaattccaatcttggaatttta
ataatatttacttattctcttttacatttaaagtatatgccccctgttat
ttttctagtccccttgtaagtgtaggaccccggtggagaacagagaatgg
ccaaaggtcaacaggagcgtatgaattggaatagggaaatccagggtttg
aaacctgggttagattaatgaagaggacaattgatgacttgttacattaa
aagaatccagctaaaggaagttacttagaacttcattctggattctagac
acctccatttctaaaattcacatgactggaatatctaaatttggggataa
tttttgaatacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_10475169_10476221
seq2: B6Ng01-196E06.b_46_1038

seq1  ATTCCAGGTCAGCCAGGACTATATAAAGAAACCCTGTCTC---AAAAAAA  47
      ||||||||||||||||||||||| || |||||||||||||   |||||||
seq2  ATTCCAGGTCAGCCAGGACTATACAATGAAACCCTGTCTCAAAAAAAAAA  50

seq1  AAAAAATCAAAACAAAACAAAAACCCAAAACAAAAACCAAAGAAAACAAA  97
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAATCAAAACAAAACAAAATCCCAAAACAAAAACCAAAGAAAACAAA  100

seq1  ACAAAGGCATCAATATTTTAAGAGCCAAACGATAATCAGTTTATATGTTC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCATCAATATTTTAAGAGCCAAACGATAATCAGTTTATATGTTC  150

seq1  TTAAAGATATGTTAGTTTATAGTATTATATTCAGACTATTGTCATGCTTA  197
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGATATGTTAGTTTATAGTATTATATTCAGACTATTGTCATGCTTA  200

seq1  TTGAAAATTGTTAACCTAATTTTACATCATGAATAGAGCTATAAAATACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTGTTAACCTAATTTTACATCATGAATAGAGCTATAAAATACT  250

seq1  AATTTTTATAACTTTCTTATTTAAACATGAATCTTAATGTATTCATTTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATAACTTTCTTATTTAAACATGAATCTTAATGTATTCATTTGC  300

seq1  TGACAATTAATATAGAAGTTTGTAACAAAACTCAAGATCACCATTCTTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTAATATAGAAGTTTGTAACAAAACTCAAGATCACCATTCTTTA  350

seq1  GAGCACCACTCTACTATAATGTGAACTTGAAGGGAAAAAGTCCAATAGGG  397
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GAGCACCACTCTACTATAATGTGACCTTGAAGGGAAAAAGTCCAATAGGG  400

seq1  AAGTAAAACTCAAGCATAAAGCACCACTTAAGACGACCTGATAAAAACGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGTAAAACTCAAGCATAAAGCACCACTTAAGACGACCTGATAAAAAAGT  450

seq1  TGCGATGCTTCAGGTAGAGAAAGCTCAGAATAAGAGCTCAGAATGTCTGG  497
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGCTTCAGGTAGAGAAAGCTCAGAATAAGAGCTCAGAATGTCTGG  500

seq1  AGAAAGAATGATGTCAAAAGATAATTCCCCATTCCTACATTGCCTGTAGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATGATGTCAAAAGATAATTCCCCATTCCTACATTGCCTGTAGT  550

seq1  AGGTCATGCAATGATGTTTTAAATGTGAGAAATAAAGAAAGAGTTAGGAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATGCAATGATGTTTTAAATGTGAGAAATAAAGAAAGAGTTAGGAT  600

seq1  ATCCAACTTGAAAATTAGCCCTGATAATAAAACTAGGTTTGGTTTTGTCT  647
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  ATCCAACTTG-AAATTAGCCCTGATAAT-AAACTAGGTTTGGTTTTGTCT  648

seq1  ATAGCCTCCTTAAAAAGTATACCAGTTGAATGTTAGGAATATAATTGCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTCCTTAAAAAGTATACCAGTTGAATGTTAGGAATATAATTGCAA  698

seq1  TTTTTTTTCAAAGCGCTACTATACATCAGGCAATAGGTAAAAATAATAAA  747
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  -TTTTTTTCAAAGCGCTACTATACATCAGGCAATAGGTAAAAAT-ATAAA  746

seq1  TTTCTCTATATATAAACTTGTTATTTACTTACTGTTTCTCCACATAAAAT  797
      ||||||| |||||||||||||   |||| ||||| |||||||||| ||||
seq2  TTTCTCTCTATATAAACTTGT--ATTAC-TACTG-TTCTCCACAT-AAAT  791

seq1  GTTAAAGTATACTGCAATAAATGATGCTTATATGTCCATGCAGTGTGCGA  847
      | ||||||||||||||   |||||||| ||||||| ||||||||||||||
seq2  G-TAAAGTATACTGCA--TAATGATGC-TATATGT-CATGCAGTGTGCGA  836

seq1  CATGGACAC-ATATGAGGGGTATATAACTCTCATTTATGGTCAAGTAGTG  896
      ||| ||||| |||||| |||||||| ||||||| |||| ||| |||| ||
seq2  CAT-GACACAATATGA-GGGTATAT-ACTCTCA-TTAT-GTC-AGTA-TG  879

seq1  CTTCCTAAATATGTTATAAGAAGCACAACTCCAAAAATAATTATTTTCTG  946
      | ||||||  |||||||||| ||||||| ||       ||| || |||||
seq2  C-TCCTAA--ATGTTATAAG-AGCACAA-TC-------AATAATATTCTG  917

seq1  TGTGAATGATAGGAAGTTGACAAAAATCCAAAGTAGGAAAAAGAATGAGC  996
      | ||||||||  |||| ||||  |||||   |||||   |||| ||||  
seq2  T-TGAATGAT--GAAG-TGAC--AAATC---AGTAG---AAAG-ATGA--  952

seq1  AATCCAGGGATATCAGCAGTTTTTGAGGAATATTAGCTCTAATATTTTAG  1046
       |||     | ||||||||  ||||||    |||||||     | |||||
seq2  CATC-----AGATCAGCAG--TTTGAG----ATTAGCT----AAATTTAG  987

seq1  CAAGCAA  1053
      | |||||
seq2  C-AGCAA  993

seq1: chr7_9885340_9886140
seq2: B6Ng01-196E06.g_64_877

seq1  GAATTCTTGACTGAGGAATACCAAATGGATGAAAAGCACATAAAAGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGACTGAGGAATACCAAATGGATGAAAAGCACATAAAAGAATG  50

seq1  TTCAACATCCTTAATCACCAGGGAAATGCAAATCAAAACAACCGTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCACCAGGGAAATGCAAATCAAAACAACCGTGAGAT  100

seq1  TCAACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGCTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGCTAGC  150

seq1  AGATGCTGGCAAGGATGTGGTAAAAGAGGAACACTCCTCCATTGCTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCAAGGATGTGGTAAAAGAGGAACACTCCTCCATTGCTGATG  200

seq1  GGATTGCGAGCTGGTACAACCACTCTGGAAATCAGTCTGGTAGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCGAGCTGGTACAACCACTCTGGAAATCAGTCTGGTAGTTCCTCA  250

seq1  GAAAATTGGCAGAAATAGTACTACCGGAGGATCCATCAATCCCTCCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGCAGAAATAGTACTACCGGAGGATCCATCAATCCCTCCCCTG  300

seq1  TGCATATATCCAGAAGACATTCCAACTTGTAATATGGACACATGCTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATATCCAGAAGACATTCCAACTTGTAATATGGACACATGCTCCAC  350

seq1  TGTGTTCATAGCAGCCTTATTTATAATAGCCAGAAAATTGAAA-GAACCT  399
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGTGTTCATAGCAGCCTTATTTATAATAGCCAGAAAATTGAAAGGAACCT  400

seq1  GGATGACCCTCAATAGAGGAATGGATACAGAAAATTTATTCTAATAACTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACCCTCAATAGAGGAATGGATACAGAAAATTTATTCTAATAACTG  450

seq1  A-TCT-CCTCTAAAATAACATTTATTCTAAATTCCAATCTT-GAATTTTA  496
      | ||| || |||||||||||||||||||||||||||||||| ||||||||
seq2  ATTCTCCCCCTAAAATAACATTTATTCTAAATTCCAATCTTGGAATTTTA  500

seq1  ATAATATTTACTTATTCTCTTTTACATTT-AAGTATATG-CCCCTGTATA  544
      ||||||||||||||||||||||||||||| ||||||||| |||||||   
seq2  ATAATATTTACTTATTCTCTTTTACATTTAAAGTATATGCCCCCTGTTAT  550

seq1  TTTTCTAGTCACCTTGTAAGTGTAGGA-TCCAGTGGAGAACAGAGAATGG  593
      |||||||||| ||||||||||||||||  || ||||||||||||||||||
seq2  TTTTCTAGTCCCCTTGTAAGTGTAGGACCCCGGTGGAGAACAGAGAATGG  600

seq1  -CAAAGGTCAACAGGAGCGTATGAGTTGG-ATAGGTAAAT-CAAGGTTTG  640
       ||||||||||||||||||||||| |||| ||||| |||| || ||||||
seq2  CCAAAGGTCAACAGGAGCGTATGAATTGGAATAGGGAAATCCAGGGTTTG  650

seq1  AAACCTGTGTTAGATTAATGAAGAGGACAAATGATGACTTGTTACATTAA  690
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  AAACCTGGGTTAGATTAATGAAGAGGACAATTGATGACTTGTTACATTAA  700

seq1  AAGAATCCAGCT-AAGGAAGTTACTTAAGACTTCATTCATGA-TCTAGAC  738
      |||||||||||| ||||||||||||||  |||||||||  || |||||||
seq2  AAGAATCCAGCTAAAGGAAGTTACTTAGAACTTCATTCTGGATTCTAGAC  750

seq1  ACCTCCATTTCTAAAATTCACATGACTTG-ATATCTAAATTTTGGGGATA  787
      ||||||||||||||||||||||||||| | ||||||||| ||||||||||
seq2  ACCTCCATTTCTAAAATTCACATGACTGGAATATCTAAA-TTTGGGGATA  799

seq1  ATTTTTG-ATACATG  801
      ||||||| |||||||
seq2  ATTTTTGAATACATG  814