BAC Information

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BAC

Clone NameB6Ng01-196F20
Chromosome7 (Build37)
Map Location 77,508,073 - 77,634,339
singlet/doubletdoublet
Overlap geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838
Upstream geneEG665410
Downstream geneLOC665486, LOC100041957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196F20.bB6Ng01-196F20.g
ACCGA018527GA018528
length1,0201,137
definitionB6Ng01-196F20.b B6Ng01-196F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,508,073 - 77,509,089)(77,633,207 - 77,634,339)
sequence
gaattccataattgtatgagaaatttgtttttaatagggaatactttgaa
ccaagacaaaactaaatccataagtcaaacaggtttaccaacaattaaat
tatttttttaacataaaatttgctgagctacaagagggaaaagaagacac
cacaaagagtaaaacaacaactttaggaagcatccttggtagtgcagaaa
tttggcagtgtaaattttactttagtaaaatgaactgaacatacagttga
catgagaaaaccacgctttcggggcagtttcttttgcacatagagacaga
gtgtgagacaaggagggcagaaagatatgggcaggcagacgctgactttt
tggcaaagagaaaaaaaaatcctatttaagcttcaccctgaaatctttct
cagccttccctttctccacagaactcacatattgcactacagcggcaggt
gctgtgattatttgaatgttttaagaaataacaagctatagcaggtacta
gcctatcataaacctggtgtgtaataaggtggtcatagagtaaagctagg
ctgagcacttctggctgattagagacaccatataactttctcctacagag
aataagaaagatagaaaataagtcatttcagagaattgtgggtctttaaa
aaaaacttctctgatttaaggaattatttgatactgcaaatgtcagatta
gaggcaagctcagcatatagtgagactgaggctgacacaggaaatttaat
aggtagccccatctcgacttaatagatgagcataattgattatggagaaa
tgttaatcttgcctctccagtgcagccatttccatgtcaagattactttt
ttacacatacacacacacacacacacacacacacacacacacacgaagag
gtgatttttgaggagaagcttcgtgtgtgtgttcctcatttttccaagct
aaagaaattatagacttcaaatatatatatatatgtatatatatatataa
tatatatatatatatgtata
gaattcatttatgtttcagatatactttatccacacaaattcaagacaat
tttacataatacttttagtgcaaatgaattttgcctctaccccattacat
gaggtcagacaagaaagttctgttggtagtgccatgatgatgctccaaag
ggttttttgcaaaatgcctgcaacattttggatatttaattatccagtta
aagatatacttaaacggcaatggtccacacaggtactcattcatctagga
ctggggaattctaagatgtagtgtttttctatctaaacccagcacagtct
gggaaacacagtggattttcagtcattatcttgctccccctacctcaaag
gctttactatctgataacattcagtttgctctgtgtgtgtttatttatca
gttcctttggtctagaataaaatccctatgagggtccagagaaatcttgg
cattatatgattgtagggctaaggtgtaagtactaagtaactattgaaaa
tcaagtgaatttttgtattagttgattgagtcctttgtatttgtttacat
gtgtatacaaatgtgatatatacgtggggggtgcatgcgtgggtgcatgt
gtgtggaagcctgtagttgaaatagaattgctaaattgattgctctccac
cttatttattgagtcaggttctctcactgaacccagagctcactgattcc
agttggtgtagctagccagcctgttttgagtaatcccctgcctcggtctc
ccagaggctgagattacagatgactgcgacaccttccccacttttgtgta
ggtggtgaggattcaccattgagacatttccccaggtctgatgccttaaa
aaaaagtctagttttccagtttttaaatttaacaacataataagaaatgt
aaagttctgtgggaccaccacgattgatgaaaggaagcattctgtgaagg
aaaaatgccaagtgaattttaacgattgggcctatgagttgtaaagaatt
caaataactgcattccttcctcatcctgatccccactctgtaatgaaaga
atataggaccattttctaccatttaccttctgatgttggctgtagcgaga
atcactcaattgtgttaaattacaagattaggtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_77508073_77509089
seq2: B6Ng01-196F20.b_46_1065

seq1  GAATTCCATAATTGTATGAGAAATTTGTTTTTAATAGGGAATACTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATTGTATGAGAAATTTGTTTTTAATAGGGAATACTTTGAA  50

seq1  CCAAGACAAAACTAAATCCATAAGTCAAACAGGTTTACCAACAATTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACAAAACTAAATCCATAAGTCAAACAGGTTTACCAACAATTAAAT  100

seq1  TATTTTTTTAACATAAAATTTGCTGAGCTACAAGAGGGAAAAGAAGACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAACATAAAATTTGCTGAGCTACAAGAGGGAAAAGAAGACAC  150

seq1  CACAAAGAGTAAAACAACAACTTTAGGAAGCATCCTTGGTAGTGCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAGTAAAACAACAACTTTAGGAAGCATCCTTGGTAGTGCAGAAA  200

seq1  TTTGGCAGTGTAAATTTTACTTTAGTAAAATGAACTGAACATACAGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAGTGTAAATTTTACTTTAGTAAAATGAACTGAACATACAGTTGA  250

seq1  CATGAGAAAACCACGCTTTCGGGGCAGTTTCTTTTGCACATAGAGACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAAACCACGCTTTCGGGGCAGTTTCTTTTGCACATAGAGACAGA  300

seq1  GTGTGAGACAAGGAGGGCAGAAAGATATGGGCAGGCAGACGCTGACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGACAAGGAGGGCAGAAAGATATGGGCAGGCAGACGCTGACTTTT  350

seq1  TGGCAAAGAGAAAAAAAAATCCTATTTAAGCTTCACCCTGAAATCTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGAGAAAAAAAAATCCTATTTAAGCTTCACCCTGAAATCTTTCT  400

seq1  CAGCCTTCCCTTTCTCCACAGAACTCACATATTGCACTACAGCGGCAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCCCTTTCTCCACAGAACTCACATATTGCACTACAGCGGCAGGT  450

seq1  GCTGTGATTATTTGAATGTTTTAAGAAATAACAAGCTATAGCAGGTACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGATTATTTGAATGTTTTAAGAAATAACAAGCTATAGCAGGTACTA  500

seq1  GCCTATCATAAACCTGGTGTGTAATAAGGTGGTCATAGAGTAAAGCTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCATAAACCTGGTGTGTAATAAGGTGGTCATAGAGTAAAGCTAGG  550

seq1  CTGAGCACTTCTGGCTGATTAGAGACACCATATAACTTTCTCCTACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACTTCTGGCTGATTAGAGACACCATATAACTTTCTCCTACAGAG  600

seq1  AATAAGAAAGATAGAAAATAAGTCATTTCAGAGAATTGTGGGTCTTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAAGATAGAAAATAAGTCATTTCAGAGAATTGTGGGTCTTTAAA  650

seq1  AAAAACTTCTCTGATTTAAGGAATTATTTGATACTGCAAATGTCAGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTTCTCTGATTTAAGGAATTATTTGATACTGCAAATGTCAGATTA  700

seq1  GAGGCAAGCTCAGCATATAGTGAGACTGAGGCTGACACAGGAAATTTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCTCAGCATATAGTGAGACTGAGGCTGACACAGGAAATTTAAT  750

seq1  AGGTAGCCCCATCTCGACTTAATAGATGAGCATAATTGATTATGGAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCCCATCTCGACTTAATAGATGAGCATAATTGATTATGGAGAAA  800

seq1  TGTTAATCTTGCCTCTCCAGTGCAGCCATTTCCATGTCAAGATTAC-TTT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTTAATCTTGCCTCTCCAGTGCAGCCATTTCCATGTCAAGATTACTTTT  850

seq1  TTACACATACACACACACACACACACACACACACACACACACACGAAGAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATACACACACACACACACACACACACACACACACACACGAAGAG  900

seq1  GTGATTTTTGAGGAGAAGCTTCGTGTGTGTGTTCCTCATTTTT-CAAGCT  948
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTGATTTTTGAGGAGAAGCTTCGTGTGTGTGTTCCTCATTTTTCCAAGCT  950

seq1  AAAGAAATTATAGACTTCAAATATATATATATATGTATATATATATAT-A  997
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGAAATTATAGACTTCAAATATATATATATATGTATATATATATATAA  1000

seq1  TATATATATATATATGTATA  1017
      ||||||||||||||||||||
seq2  TATATATATATATATGTATA  1020

seq1: chr7_77633207_77634339
seq2: B6Ng01-196F20.g_66_1202 (reverse)

seq1  GCAGACACTAATCTTGT-ATTTAACAC-ATTGAGTGATACTCGCTACAGC  48
      |||||| |||||||||| ||||||||| |||||||||| |||||||||||
seq2  GCAGAC-CTAATCTTGTAATTTAACACAATTGAGTGATTCTCGCTACAGC  49

seq1  CAACATTCCAGA--GTAAATGGTAG-AAATG--TCTATATTTCTTTCATT  93
      ||||||  ||||  ||||||||||| |||||   ||||| ||||||||||
seq2  CAACAT--CAGAAGGTAAATGGTAGAAAATGGTCCTATA-TTCTTTCATT  96

seq1  ACAGAGTTGGGGATCA-GATGA-GAAGGAATGCAGTTATTTGAATTCTTT  141
      |||||| ||||||||| ||||| |||||||||||||||||||||||||||
seq2  ACAGAG-TGGGGATCAGGATGAGGAAGGAATGCAGTTATTTGAATTCTTT  145

seq1  ACAACCTCATAGGCCCAATCGTTTAAAATTCACTTGGCATTTTTCCTTCA  191
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACAA-CTCATAGGCCCAATCG-TTAAAATTCACTTGGCATTTTTCCTTCA  193

seq1  CAGAATGCT--CCTTCATCAATCGTGGT-GTCCCACAGAACTTTACATTT  238
      |||||||||  | ||||||||||||||| |||||||||||||||||||||
seq2  CAGAATGCTTCCTTTCATCAATCGTGGTGGTCCCACAGAACTTTACATTT  243

seq1  CTTATTATGTTGTTAAATTTAAAAACTGGAAAACTAGACTTTTTTTTTAA  288
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTATTATGTTGTTAAATTTAAAAACTGGAAAACTAGAC-TTTTTTTTAA  292

seq1  GGCATCAGACCTGGGGAAATGTCTCAATGGTGAATCCTCACCACCTACAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGACCTGGGGAAATGTCTCAATGGTGAATCCTCACCACCTACAC  342

seq1  AAAAGTGGGGAAGGTGTCGCAGTCATCTGTAATCTCAGCCTCTGGGAGAC  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGGGAAGGTGTCGCAGTCATCTGTAATCTCAGCCTCTGGGAGAC  392

seq1  CGAGGCAGGGGATTACTCAAAACAGGCTGGCTAGCTACACCAACTGGAAT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCAGGGGATTACTCAAAACAGGCTGGCTAGCTACACCAACTGGAAT  442

seq1  CAGTGAGCTCTGGGTTCAGTGAGAGAACCTGACTCAATAAATAAGGTGGA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTCTGGGTTCAGTGAGAGAACCTGACTCAATAAATAAGGTGGA  492

seq1  GAGCAATCAATTTAGCAATTCTATTTCAACTACAGGCTTCCACACACATG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATCAATTTAGCAATTCTATTTCAACTACAGGCTTCCACACACATG  542

seq1  CACCCACGCATGCACCCCCCACGTATATATCACATTTGTATACACATGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGCATGCACCCCCCACGTATATATCACATTTGTATACACATGTA  592

seq1  AACAAATACAAAGGACTCAATCAACTAATACAAAAATTCACTTGATTTTC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATACAAAGGACTCAATCAACTAATACAAAAATTCACTTGATTTTC  642

seq1  AATAGTTACTTAGTACTTACACCTTAGCCCTACAATCATATAATGCCAAG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTACTTAGTACTTACACCTTAGCCCTACAATCATATAATGCCAAG  692

seq1  ATTTCTCTGGACCCTCATAGGGATTTTATTCTAGACCAAAGGAACTGATA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGGACCCTCATAGGGATTTTATTCTAGACCAAAGGAACTGATA  742

seq1  AATAAACACACACAGAGCAAACTGAATGTTATCAGATAGTAAAGCCTTTG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACACACACAGAGCAAACTGAATGTTATCAGATAGTAAAGCCTTTG  792

seq1  AGGTAGGGGGAGCAAGATAATGACTGAAAATCCACTGTGTTTCCCAGACT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGGGAGCAAGATAATGACTGAAAATCCACTGTGTTTCCCAGACT  842

seq1  GTGCTGGGTTTAGATAGAAAAACACTACATCTTAGAATTCCCCAGTCCTA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGTTTAGATAGAAAAACACTACATCTTAGAATTCCCCAGTCCTA  892

seq1  GATGAATGAGTACCTGTGTGGACCATTGCCGTTTAAGTATATCTTTAACT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGAGTACCTGTGTGGACCATTGCCGTTTAAGTATATCTTTAACT  942

seq1  GGATAATTAAATATCCAAAATGTTGCAGGCATTTTGCAAAAAACCCTTTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTAAATATCCAAAATGTTGCAGGCATTTTGCAAAAAACCCTTTG  992

seq1  GAGCATCATCATGGCACTACCAACAGAACTTTCTTGTCTGACCTCATGTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCATCATGGCACTACCAACAGAACTTTCTTGTCTGACCTCATGTA  1042

seq1  ATGGGGTAGAGGCAAAATTCATTTGCACTAAAAGTATTATGTAAAATTGT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTAGAGGCAAAATTCATTTGCACTAAAAGTATTATGTAAAATTGT  1092

seq1  CTTGAATTTGTGTGGATAAAGTATATCTGAAACATAAATGAATTC  1133
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATTTGTGTGGATAAAGTATATCTGAAACATAAATGAATTC  1137