BAC Information

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BAC

Clone NameB6Ng01-196O18
Chromosome7 (Build37)
Map Location 24,731,300 - 24,787,679
singlet/doubletdoublet
Overlap geneLOC100043121, V1rd16, LOC384575, V1rd20
Upstream geneLOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17
Downstream geneV1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196O18.bB6Ng01-196O18.g
ACCGA018930GA018931
length1,1781,162
definitionB6Ng01-196O18.b B6Ng01-196O18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,731,300 - 24,732,484)(24,786,522 - 24,787,679)
sequence
gaattctcaactgaggaataccgaagagctgaaaaaatgctcaacatcct
taatcatcagggaaatacaaatcaaaaccaccctgagattctacctcaca
ccagtcagaatggctaggatcaaaaattcaggtgacagcagatgctggtg
aggatgtggagaaagatggacactcctccattgttggtgggatttcagac
tgttacaaccactctggaaatcagtttagtggtttctcagaaaattacac
agtactactggaaaatccagcaattcctctcttgggcatatacccagaag
atgttccaactcgtaataaggacacatgctccactatgttcatagcagcc
ttatttttttttcttattaatacagtatttatttgtcttctctctgtcaa
accctgagccaagcactttccccagacttcttggggagttacaggaaaag
gaacatacagggcagacgagacacgaaagaaccatgggaggtggaagtgg
agacagctgcttcacatggcgaagaggatgagaaaggccaccattaggca
aaagagccccatggcctctgagagggcaaagcccagaatcgcgtaggaga
agagttgttgcttcagagaagggttcctggcatagccaatgatgagactc
ccaaaaacagtcccaatccctgccccagagccagccaccccaactgtcgc
agccccagctccaatgaacttggcagctgtgtcgatgtcccttgaaatgg
cgctggtttggaaactgcggctagggataagtgaagtcagaggccgccgg
accgccaagctgctgaggctctcatctgttggcatctgtggtcgcttcaa
ctccactgcagacagcggacgactcagcagctgagaggtgctcctgagag
aggtgctcctgatcagggagcgggtagagacgaacttggagcaggcgtac
atttttcaggggtgaggggccgaggcaggagggctgctcccagggcagag
gagacagagagccatagcagcccttattgataatagccaggagctgcaaa
gattctagatgtccctcaaagagatggaatacagaaaatggtggtacatt
acaccatggagtactactcagcttataaaacatgattcatggaattccta
ggcatgttacagtctggagattcatcct
gaattcaatataatttggagggagaggaggctgcaaatggaatgaatttt
aatcaataaaataacttaatcaattaaaaaagaaaagaaaggaaaaatgc
accataaaaataatgaatacaatttcctcatgttatagcaacatgttaaa
aacaatgtgtatattaataggatgtatgattacatataataatccataag
gttttgtaactgaattcagatgtagaatgttaagttgttggcttttgagg
accttttgtactactcagccacacaacaaaatatgaaatatttctgataa
agccacctgtgttctcatcacacagatgaacatatgtttacctatttatc
ctccatgtcaaaaaatccacttgctaacaagtttcattcattcatatttt
cccaatcttaatttttgttctataaagccagattccagagttttacctgc
attatctccagcttcttgcctaaattattaacacaatcactattataccc
tttgcaagctgatgctcagtctccgctttgctcatttatatgtttactat
aggaacatgagggcctccatccaccagataaaatttaacatctcacgtac
ataaatgacattgaatgcagttttctgctaagagtaaatctagaaaacag
acatttctttgagataaaagaaaatattaagcaatttgagtaaaatttca
gtcttcaaaaaattaatcagtcatgttggctttaggagacaatgtacaca
gaagaagggaaaagagcattttaagaagtccatggttgcaagaatcccac
cttctgagacacaggatgaagatgatcatctgatggccacatcaggaaca
cagctcctatagaatcatatattgtagtgccttttacagcaaagaagttc
tgtgtgactctttgcctgaaaaagaatggaaagtacattcagaatggttt
tttaatctctatccaatgctgtaaagggtaacccgacatgtctaggttta
tagtctcataaaatagtagggtacctgcacatgacatcccttcagagagt
ttaataatttgttctctgtgctgtagcatatttgttctgcgtgggtgtcc
tttggaacaactcttgatggacgaaggtcatttattcctagagcaagtct
cattttactttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24731300_24732484
seq2: B6Ng01-196O18.b_46_1223

seq1  GAATTCTCAACTGAGGAATACCGAAGAGCTGAAAAAATGCTCAACATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAATACCGAAGAGCTGAAAAAATGCTCAACATCCT  50

seq1  TAATCATCAGGGAAATACAAATCAAAACCACCCTGAGATTCTACCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCAGGGAAATACAAATCAAAACCACCCTGAGATTCTACCTCACA  100

seq1  CCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGCAGATGCTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGCAGATGCTGGTG  150

seq1  AGGATGTGGAGAAAGATGGACACTCCTCCATTGTTGGTGGGATTTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTGGAGAAAGATGGACACTCCTCCATTGTTGGTGGGATTTCAGAC  200

seq1  TGTTACAACCACTCTGGAAATCAGTTTAGTGGTTTCTCAGAAAATTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAACCACTCTGGAAATCAGTTTAGTGGTTTCTCAGAAAATTACAC  250

seq1  AGTACTACTGGAAAATCCAGCAATTCCTCTCTTGGGCATATACCCAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTACTGGAAAATCCAGCAATTCCTCTCTTGGGCATATACCCAGAAG  300

seq1  ATGTTCCAACTCGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAACTCGTAATAAGGACACATGCTCCACTATGTTCATAGCAGCC  350

seq1  TTATTTTTTTTTCTTATTAATACAGTATTTATTTGTCTTCTCTCTGTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTTTCTTATTAATACAGTATTTATTTGTCTTCTCTCTGTCAA  400

seq1  ACCCTGAGCCAAGCACTTTCCCCAGACTTCTTGGGGAGTTACAGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGCCAAGCACTTTCCCCAGACTTCTTGGGGAGTTACAGGAAAAG  450

seq1  GAACATACAGGGCAGACGAGACACGAAAGAACCATGGGAGGTGGAAGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATACAGGGCAGACGAGACACGAAAGAACCATGGGAGGTGGAAGTGG  500

seq1  AGACAGCTGCTTCACATGGCGAAGAGGATGAGAAAGGCCACCATTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTGCTTCACATGGCGAAGAGGATGAGAAAGGCCACCATTAGGCA  550

seq1  AAAGAGCCCCATGGCCTCTGAGAGGGCAAAGCCCAGAATCGCGTAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCCCATGGCCTCTGAGAGGGCAAAGCCCAGAATCGCGTAGGAGA  600

seq1  AGAGTTGTTGCTTCAGAGAAGGGTTCCTGGCATAGCCAATGATGAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGTTGCTTCAGAGAAGGGTTCCTGGCATAGCCAATGATGAGACTC  650

seq1  CCAAAAACAGTCCCAATCCCTGCCCCAGAGCCAGCCACCCCAACTGTCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACAGTCCCAATCCCTGCCCCAGAGCCAGCCACCCCAACTGTCGC  700

seq1  AGCCCCAGCTCCAATGAACTTGGCAGCTGTGTCGATGTCCCTTGAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGCTCCAATGAACTTGGCAGCTGTGTCGATGTCCCTTGAAATGG  750

seq1  CGCTGGTTTGGAAACTGCGGCTAGGGATAAGTGAAGTCAGAGGCCGCCGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGTTTGGAAACTGCGGCTAGGGATAAGTGAAGTCAGAGGCCGCCGG  800

seq1  ACCGCCAAGCTGCTGAGGCTCTCATCTGTTGGCATCTGTGGTCGCTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCAAGCTGCTGAGGCTCTCATCTGTTGGCATCTGTGGTCGCTTCAA  850

seq1  CTCCACTGCAGACAGCGGACGACTCAGCAGCTGAGAGGTGCTCCTGAGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTGCAGACAGCGGACGACTCAGCAGCTGAGAGGTGCTCCTGAGAG  900

seq1  AGGTGCTCCTGATCAGGGAGCGGGTAGAGACGAACTTGGAGCAGGCGTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCCTGATCAGGGAGCGGGTAGAGACGAACTTGGAGCAGGCGTAC  950

seq1  A-TTTTCAGGGGTGAGGGGCCGAGGCAGGAGGGCTGCTCCCAGGGCAGAG  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAGGGGTGAGGGGCCGAGGCAGGAGGGCTGCTCCCAGGGCAGAG  1000

seq1  AAGACAGAGAGCCATAGCAG-CCTTATTGATAATAGCCAGAAGCTGCAAA  1048
       ||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GAGACAGAGAGCCATAGCAGCCCTTATTGATAATAGCCAGGAGCTGCAAA  1050

seq1  GAATCCAGATGTCCCTCAAAAGAGGAATGG-ATACAGAAAAT-GTGGTAC  1096
      || || ||||||||||| ||||||  |||| ||||||||||| |||||||
seq2  GATTCTAGATGTCCCTC-AAAGAG--ATGGAATACAGAAAATGGTGGTAC  1097

seq1  ATTTACACAATGGAGTACTACTCAGCTATTAAAAACAATGAATTCATGAA  1146
      | |||||| |||||||||||||||||  ||| |||  ||| ||||||| |
seq2  A-TTACACCATGGAGTACTACTCAGC--TTATAAAACATG-ATTCATGGA  1143

seq1  ATTCTTAGGCAAATGGTTACA-TCTGGAGGATATCATCCT  1185
      |||| ||||||    |||||| |||||| ||| |||||||
seq2  ATTCCTAGGCA---TGTTACAGTCTGGA-GAT-TCATCCT  1178

seq1: chr7_24786522_24787679
seq2: B6Ng01-196O18.g_63_1224 (reverse)

seq1  GAAAGTAAAAATGGAGACTTGCTCTGGGGATAAATGACTTTCCTTCATC-  49
      ||||||||||   |||||||||||| || ||||||||| ||| | |||| 
seq2  GAAAGTAAAA--TGAGACTTGCTCTAGGAATAAATGACCTTCGTCCATCA  48

seq1  AGAGTTGTCCCAAA-GACA-CCACGCAG-ACAAATATGCTAACAGCACAG  96
      |||||||| ||||| |||| |||||||| ||||||||||| |||||||||
seq2  AGAGTTGTTCCAAAGGACACCCACGCAGAACAAATATGCT-ACAGCACAG  97

seq1  AGAACAAAATAATAAACTCTCTGAA-GGATGTCATGTGCAGGTACCCTAC  145
      |||||||| || ||||||||||||| ||||||||||||||||||||||||
seq2  AGAACAAATTATTAAACTCTCTGAAGGGATGTCATGTGCAGGTACCCTAC  147

seq1  TATTTTATGAGACTATAAACCTAGACATTGTCGGGTTA-CCTTTACAGCA  194
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  TATTTTATGAGACTATAAACCTAGACA-TGTCGGGTTACCCTTTACAGCA  196

seq1  TTGGATAGAGATT-AAAAACCATTCTGAATGTAC-TTCCATTCTTTTTCA  242
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  TTGGATAGAGATTAAAAAACCATTCTGAATGTACTTTCCATTCTTTTTCA  246

seq1  GGCAAAGAGTCACACAGAACTTCTTTGCTGTAAAAGGCACTACAATATAT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGAGTCACACAGAACTTCTTTGCTGTAAAAGGCACTACAATATAT  296

seq1  GATTCTATAGGAGCTGTGTTCCTGATGTGGCCATCAGATGATCATCTTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATAGGAGCTGTGTTCCTGATGTGGCCATCAGATGATCATCTTCA  346

seq1  TCCTGTGTCTCAGAAGGTGGGATTCTTGCAACCATGGACTTCTTAAAATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTCTCAGAAGGTGGGATTCTTGCAACCATGGACTTCTTAAAATG  396

seq1  CTCTTTTCCCTTCTTCTGTGTACATTGTCTCCTAAAGCCAACATGACTGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCCTTCTTCTGTGTACATTGTCTCCTAAAGCCAACATGACTGA  446

seq1  TTAATTTTTTGAAGACTGAAATTTTACTCAAATTGCTTAATATTTTCTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTGAAGACTGAAATTTTACTCAAATTGCTTAATATTTTCTTT  496

seq1  TATCTCAAAGAAATGTCTGTTTTCTAGATTTACTCTTAGCAGAAAACTGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAAGAAATGTCTGTTTTCTAGATTTACTCTTAGCAGAAAACTGC  546

seq1  ATTCAATGTCATTTATGTACGTGAGATGTTAAATTTTATCTGGTGGATGG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGTCATTTATGTACGTGAGATGTTAAATTTTATCTGGTGGATGG  596

seq1  AGGCCCTCATGTTCCTATAGTAAACATATAAATGAGCAAAGCGGAGACTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCATGTTCCTATAGTAAACATATAAATGAGCAAAGCGGAGACTG  646

seq1  AGCATCAGCTTGCAAAGGGTATAATAGTGATTGTGTTAATAATTTAGGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGCTTGCAAAGGGTATAATAGTGATTGTGTTAATAATTTAGGCA  696

seq1  AGAAGCTGGAGATAATGCAGGTAAAACTCTGGAATCTGGCTTTATAGAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGGAGATAATGCAGGTAAAACTCTGGAATCTGGCTTTATAGAAC  746

seq1  AAAAATTAAGATTGGGAAAATATGAATGAATGAAACTTGTTAGCAAGTGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAAGATTGGGAAAATATGAATGAATGAAACTTGTTAGCAAGTGG  796

seq1  ATTTTTTGACATGGAGGATAAATAGGTAAACATATGTTCATCTGTGTGAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGACATGGAGGATAAATAGGTAAACATATGTTCATCTGTGTGAT  846

seq1  GAGAACACAGGTGGCTTTATCAGAAATATTTCATATTTTGTTGTGTGGCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACAGGTGGCTTTATCAGAAATATTTCATATTTTGTTGTGTGGCT  896

seq1  GAGTAGTACAAAAGGTCCTCAAAAGCCAACAACTTAACATTCTACATCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTACAAAAGGTCCTCAAAAGCCAACAACTTAACATTCTACATCTG  946

seq1  AATTCAGTTACAAAACCTTATGGATTATTATATGTAATCATACATCCTAT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTTACAAAACCTTATGGATTATTATATGTAATCATACATCCTAT  996

seq1  TAATATACACATTGTTTTTAACATGTTGCTATAACATGAGGAAATTGTAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACACATTGTTTTTAACATGTTGCTATAACATGAGGAAATTGTAT  1046

seq1  TCATTATTTTTATGGTGCATTTTTCCTTTCTTTTCTTTTTTAATTGATTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTTTATGGTGCATTTTTCCTTTCTTTTCTTTTTTAATTGATTA  1096

seq1  AGTTATTTTATTGATTAAAATTCATTCCATTTGCAGCCTCCTCTCCCTCC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTATTGATTAAAATTCATTCCATTTGCAGCCTCCTCTCCCTCC  1146

seq1  AAATTATATTGAATTC  1158
      ||||||||||||||||
seq2  AAATTATATTGAATTC  1162