BAC Information

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BAC

Clone NameB6Ng01-197F23
Chromosome7 (Build37)8 (Build37)
Map Location 126,823,896 - 126,824,85452,017,057 - 52,017,088
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1
Downstream geneBC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1, Dnahc3, Tmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197F23.bB6Ng01-197F23.g
ACCGA019253GA019254
length971210
definitionB6Ng01-197F23.b B6Ng01-197F23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,823,896 - 126,824,854)(52,017,057 - 52,017,088)
sequence
gaattcatttcagagaacattcccctgcagagaaacttgagcaacttaat
tgcgagacctcctgagaacacaaaggctttgcttgccaagaaaacctggc
ccaagagactccaactaataaaatatcagactttctatcttccaatctag
caaacatactgaagttgatggatgtgcctggctgcatgtgctgaccccat
ctgctcttccctccaacttcatcctacggtgcagtggacccagcttagag
gcactgctatacctggagacatgaatgtcttcactaaggcttcatggctc
tgttccccctgaagtataagggatgcaactctgagcccaggcaagcactc
aaccctgacctgccgctccaatctgccacacagtctatattgcacagccg
gaatttgaaacaggttttctgactccaaaaaaatctataatcatagctgc
tgaactgtatgtaggatcaaggttgctaaggttacaatgaccactttgaa
gtgttaggttttgtctcattttggttggttttttttttttttttcctttt
taatcaggacccaacaggacaacactatgttctgccactgacccaggact
ccactgtatagtggtttgtttgtttgtttttaaatactgcctctatagga
aagtactcttagatcctattataaaaaaacgtctaaaaactgaatggacc
tagaacatttggtaaaattccctttcataattactgcctgtaagtactcc
acacgacgtggtggatttctctcccaggctatacagaaagctttaactaa
tgagttgtttacctggagctgtgaggtgcacagcagggctagaagacagt
tccgagctgtcctctcgcagcagccagaggcgttctcttagtcattaggc
cactatctcatggactctgtggcagataagaatttcattgtggaaaccag
aagaaagggcagaagtttggg
taaccagtacccccagagcttcgtgggactaaaccaccaaccaaagaata
tacatggtaggattcatggctccagttgcatatgtagcagaggatggcct
agttggtcatcaatgggaggagaggcccttagtcctgtgaaggctctctg
ccccagtggaggggaaagccaggaccaggaagtgggagtgggtgggttgg
tgagcagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_126823896_126824854
seq2: B6Ng01-197F23.b_45_1015

seq1  GAATTCATTTCAGAGAACATTCCCCTGCAGAGAAACTTGAGCAACTTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCAGAGAACATTCCCCTGCAGAGAAACTTGAGCAACTTAAT  50

seq1  TGCGAGACCTCCTGAGAACACAAAGGCTTTGCTTGCCAAGAAAACCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGACCTCCTGAGAACACAAAGGCTTTGCTTGCCAAGAAAACCTGGC  100

seq1  CCAAGAGACTCCAACTAATAAAATATCAGACTTTCTATCTTCCAATCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGACTCCAACTAATAAAATATCAGACTTTCTATCTTCCAATCTAG  150

seq1  CAAACATACTGAAGTTGATGGATGTGCCTGGCTGCATGTGCTGACCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACTGAAGTTGATGGATGTGCCTGGCTGCATGTGCTGACCCCAT  200

seq1  CTGCTCTTCCCTCCAACTTCATCCTACGGTGCAGTGGACCCAGCTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTTCCCTCCAACTTCATCCTACGGTGCAGTGGACCCAGCTTAGAG  250

seq1  GCACTGCTATACCTGGAGACATGAATGTCTTCACTAAGGCTTCATGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGCTATACCTGGAGACATGAATGTCTTCACTAAGGCTTCATGGCTC  300

seq1  TGTTCCCCCTGAAGTATAAGGGATGCAACTCTGAGCCCAGGCAAGCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCCCTGAAGTATAAGGGATGCAACTCTGAGCCCAGGCAAGCACTC  350

seq1  AACCCTGACCTGCCGCTCCAATCTGCCACACAGTCTATATTGCACAGCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGACCTGCCGCTCCAATCTGCCACACAGTCTATATTGCACAGCCG  400

seq1  GAATTTGAAACAGGTTTTCTGACTCCAAAAAAATCTATAATCATAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAAACAGGTTTTCTGACTCCAAAAAAATCTATAATCATAGCTGC  450

seq1  TGAACTGTATGTAGGATCAAGGTTGCTAAGGTTACAATGACCACTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTATGTAGGATCAAGGTTGCTAAGGTTACAATGACCACTTTGAA  500

seq1  GTGTTAGGTTTTGTCTCATTTTGGTTGGTTTTTTTTTTTTTTTTCCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGGTTTTGTCTCATTTTGGTTGGTTTTTTTTTTTTTTTTCCTTTT  550

seq1  TAATCAGGACCCAACAGGACAACACTATGTTCTGCCACTGACCCAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGACCCAACAGGACAACACTATGTTCTGCCACTGACCCAGGACT  600

seq1  CCACTGTATAGTGGTTTGTTTGTTTGTTTTTAAATACTGCCTCTATAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTATAGTGGTTTGTTTGTTTGTTTTTAAATACTGCCTCTATAGGA  650

seq1  AAGTACTCTTAGATCCTATTATAAAAAAACGTCTAAAAACTGAATGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTTAGATCCTATTATAAAAAAACGTCTAAAAACTGAATGGACC  700

seq1  TAGAACATTTGGTAAAATTCCCTTTCATAATTACTGCCTGTAAGTACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACATTTGGTAAAATTCCCTTTCATAATTACTGCCTGTAAGTACTCC  750

seq1  ACACGACGTGGTGGATTTCTCTCCCAGGCTATACAGAAAGCTTTAACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGACGTGGTGGATTTCTCTCCCAGGCTATACAGAAAGCTTTAACTAA  800

seq1  TGAGTTG-TTACCTGGAGCTGTGAGGTGCACAGCAGGGCTAG-AGACAGT  848
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGTTGTTTACCTGGAGCTGTGAGGTGCACAGCAGGGCTAGAAGACAGT  850

seq1  TCCGAGCTGT-CTCTCGCAGCAGCCAGAGGCGTTCTCTTAGTCATTAGG-  896
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  TCCGAGCTGTCCTCTCGCAGCAGCCAGAGGCGTTCTCTTAGTCATTAGGC  900

seq1  CACTATC-CATGGACTCTGT-GCAGATAAGAA-TTCA-TGTGG-AACCAG  941
      ||||||| |||||||||||| ||||||||||| |||| ||||| ||||||
seq2  CACTATCTCATGGACTCTGTGGCAGATAAGAATTTCATTGTGGAAACCAG  950

seq1  AAGAA--GGCAG-AGTTTGGG  959
      |||||  ||||| ||||||||
seq2  AAGAAAGGGCAGAAGTTTGGG  971

seq1: chr8_52017057_52017088
seq2: B6Ng01-197F23.g_248_279 (reverse)

seq1  CCCCTGCTCACCAACCCACCAACTCCCACTTC  32
      |||||||||||||||||||| |||||||||||
seq2  CCCCTGCTCACCAACCCACCCACTCCCACTTC  32