BAC Information

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BAC

Clone NameB6Ng01-197K23
Chromosome7 (Build37)
Map Location 128,574,861 - 128,708,204
singlet/doubletdoublet
Overlap geneHs3st2
Upstream geneAbca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e, Cdr2, 4933427G17Rik, EG668548, Mettl9, LOC668456, Igsf6, Otoa, LOC668556
Downstream geneUsp31, Scnn1g, Scnn1b, Cog7, Gga2, Ears2, Ubfd1, Ndufab1, Palb2, Dctn5, Plk1, Ern2, 2010110P09Rik, Prkcb1, LOC668486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197K23.bB6Ng01-197K23.g
ACCGA019484GA019485
length9851,075
definitionB6Ng01-197K23.b B6Ng01-197K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,574,861 - 128,575,526)(128,707,133 - 128,708,204)
sequence
gaattccatgtttggctactaccatggcatgcttactattctgtcttcca
ggtccctacaacttattcttcccactcaactacctccagctcaatatctt
gccaaacttccacacagctcctgcctctagttagtcaccattttcttatt
tatttttccattgatcaatttatttattcactttacattctgatcactgc
catccccttctcctgcccccgccagaatccctcccccatactccctatcc
cttctcctctgagagggtaggaaccccctccccccaaagcatatcaagtc
tctgcagggctaggtgtatcctctcccacagaagctagacaaggcagtcc
agttaggggaacaggttccacagacaggcaacatctttagggacagctcc
ccacttcagttgttgggggactcatgaagagtgagctgcacatttgttgg
caggggcttaggtccagcccatacaggttctctagttggtggttcagact
ctgagatccccaagagctcaggtaagttgactctgtaggtcttcccgtgg
cactcatattccctcaggggccttctgtcctcctctcttccttaagactc
ttggaactctgtgcaatgtttggctgtgggtccctgcatctgtttcagtc
agctgctgggtagagcctctcagagtattgttatgctaggctcctgtcta
aaagcataagaaagtatcattaatagtatcagggattggtgcttgcccat
gggatgggtctcaagttgggtcagttattggttggctatttcttcagtct
ctaatccatctttgtccctgcatttcatgcagacaggacaaattttgggt
agaagattttgtgggtgggttagtgtccttatcccttcactgggcatttg
cctggctatggaggtggccacttcaggttccatatccccactagttggat
ctcagctaaagtcacccctatagactcctgggaac
gaattcagtgccacttttggtctgaattcaaatgattcaaatgccatctc
attctcttgaacagtttttcctcctgctgatgcgttctgtgttgtaacta
ctcgtgttagttgttgtctatctttctgcattggcataaggtccagagtg
aatgttagatgcctgttttgttctcatgtggttctcttaccctagaacac
tacctggtggttactacgctctgtctctctcactgtttgtctttctctgc
ctgtctctgtctgtcttggtctctctccttctgtttgtctcttgtctctg
tctctctgtctcactccatttgtctctgtctctgattctccctctctttc
cctccttcacccacagaaatcgtgcaatgacataacaaagaagagagccc
tctctaagagttaagaatgctggcacctgctcttggatttccagtctcca
taactgtgacaaatgcatgtttgctgttcaagccacctgctcagtgatgt
tctgtgatgttctgtgaaagtatcctgaactgatagagacagttatgagc
caagctcaggagccaagcagttcggaggccagctggacagtgtcaagtgg
agacttctggaattacgaaaagccagaattgtcataagcagtgggaagta
atggcagaatgggcaaggactggcagtgcccatgttccctgtgtaagccg
tttaatgtcttcggagatgcctatagttctatcccactccgaggggctct
tactttaagatgtggtaccagccaagaagcagtgaggaagaagaaattag
gaagagtgagccgtaaggaagtctatcctggggctcttctttactgcttt
ctgaatctgttttccactgcaaaatcagacccttccatccagcaccctct
ggcaaccctttgcattcctttctctcttttctcacgccccgtagaacctg
gaggttactctcttacaccaccaggtggccaccatgcttcggggagtcaa
aaccctagaggtaattattcactggagcacaactctggggtagtagcaag
ttgtactacatttattctcatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_128574861_128575526
seq2: B6Ng01-197K23.b_42_707

seq1  GAATTCCATGTTTGGCTACTACCATGGCATGCTTACTATTCTGTCTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTGGCTACTACCATGGCATGCTTACTATTCTGTCTTCCA  50

seq1  GGTCCCTACAACTTATTCTTCCCACTCAACTACCTCCAGCTCAATATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTACAACTTATTCTTCCCACTCAACTACCTCCAGCTCAATATCTT  100

seq1  GCCAAACTTCCACACAGCTCCTGCCTCTAGTTAGTCACCATTTTCTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAACTTCCACACAGCTCCTGCCTCTAGTTAGTCACCATTTTCTTATT  150

seq1  TATTTTTCCATTGATCAATTTATTTATTCACTTTACATTCTGATCACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCATTGATCAATTTATTTATTCACTTTACATTCTGATCACTGC  200

seq1  CATCCCCTTCTCCTGCCCCCGCCAGAATCCCTCCCCCATACTCCCTATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTTCTCCTGCCCCCGCCAGAATCCCTCCCCCATACTCCCTATCC  250

seq1  CTTCTCCTCTGAGAGGGTAGGAACCCCCTCCCCCCAAAGCATATCAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTCTGAGAGGGTAGGAACCCCCTCCCCCCAAAGCATATCAAGTC  300

seq1  TCTGCAGGGCTAGGTGTATCCTCTCCCACAGAAGCTAGACAAGGCAGTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGGGCTAGGTGTATCCTCTCCCACAGAAGCTAGACAAGGCAGTCC  350

seq1  AGTTAGGGGAACAGGTTCCACAGACAGGCAACATCTTTAGGGACAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGGGAACAGGTTCCACAGACAGGCAACATCTTTAGGGACAGCTCC  400

seq1  CCACTTCAGTTGTTGGGGGACTCATGAAGAGTGAGCTGCACATTTGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAGTTGTTGGGGGACTCATGAAGAGTGAGCTGCACATTTGTTGG  450

seq1  CAGGGGCTTAGGTCCAGCCCATACAGGTTCTCTAGTTGGTGGTTCAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCTTAGGTCCAGCCCATACAGGTTCTCTAGTTGGTGGTTCAGACT  500

seq1  CTGAGATCCCCAAGAGCTCAGGTAAGTTGACTCTGTAGGTCTTCCCGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCCCCAAGAGCTCAGGTAAGTTGACTCTGTAGGTCTTCCCGTGG  550

seq1  CACTCATATTCCCTCAGGGGCCTTCTGTCCTCCTCTCTTCCTTAAGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCATATTCCCTCAGGGGCCTTCTGTCCTCCTCTCTTCCTTAAGACTC  600

seq1  TTGGAACTCTGTGCAATGTTTGGCTGTGGGTCCCTGCATCTGTTTCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTCTGTGCAATGTTTGGCTGTGGGTCCCTGCATCTGTTTCAGTC  650

seq1  AGCTGCTGGGTAGAGC  666
      ||||||||||||||||
seq2  AGCTGCTGGGTAGAGC  666

seq1: chr7_128707133_128708204
seq2: B6Ng01-197K23.g_68_1142 (reverse)

seq1  TTAAATGAGA--TAATGTAAGTACAACCTGCTTACCTACCCAGAGTTGTG  48
      ||||||||||   ||||| |||||||| ||| |||   ||||||||||||
seq2  TTAAATGAGAATAAATGT-AGTACAACTTGC-TACTACCCCAGAGTTGTG  48

seq1  CTCCAGTGATTAATTACCTCTA-GGTTTTGACTCCCCGAAGCATGGTTGC  97
      ||||||||| |||||||||||| |||||||||||||||||||||||| ||
seq2  CTCCAGTGAATAATTACCTCTAGGGTTTTGACTCCCCGAAGCATGGTGGC  98

seq1  CACCTGGTGGTGTAAGAGAGTAA-CTCCAGGTTCTACGGGGCGTGAG-AA  145
      ||||||||||||||||||||||| ||||||||||||||||||||||| ||
seq2  CACCTGGTGGTGTAAGAGAGTAACCTCCAGGTTCTACGGGGCGTGAGAAA  148

seq1  AGAGAGAAAGGAATGCAAAGGGTTGCCAGAGGGTGCTGGATGGAAGGGTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAGGAATGCAAAGGGTTGCCAGAGGGTGCTGGATGGAAGGGTC  198

seq1  TGATTTTGCAGTGGAAAACAGATTCAGAAAGCAGTAAAGAAGAGCCCCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGCAGTGGAAAACAGATTCAGAAAGCAGTAAAGAAGAGCCCCAG  248

seq1  GATAGACTTCCTTACGGCTCACTCTTCCTAATTTCTTCTTCCTCACTGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGACTTCCTTACGGCTCACTCTTCCTAATTTCTTCTTCCTCACTGCT  298

seq1  TCTTGGCTGGTACCACATCTTAAAGTAAGAGCCCCTCGGAGTGGGATAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTGGTACCACATCTTAAAGTAAGAGCCCCTCGGAGTGGGATAGA  348

seq1  ACTATAGGCATCTCCGAAGACATTAAACGGCTTACACAGGGAACATGGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGCATCTCCGAAGACATTAAACGGCTTACACAGGGAACATGGGC  398

seq1  ACTGCCAGTCCTTGCCCATTCTGCCATTACTTCCCACTGCTTATGACAAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGTCCTTGCCCATTCTGCCATTACTTCCCACTGCTTATGACAAT  448

seq1  TCTGGCTTTTCGTAATTCCAGAAGTCTCCACTTGACACTGTCCAGCTGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTTCGTAATTCCAGAAGTCTCCACTTGACACTGTCCAGCTGGC  498

seq1  CTCCGAACTGCTTGGCTCCTGAGCTTGGCTCATAACTGTCTCTATCAGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGAACTGCTTGGCTCCTGAGCTTGGCTCATAACTGTCTCTATCAGTT  548

seq1  CAGGATACTTTCACAGAACATCACAGAACATCACTGAGCAGGTGGCTTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACTTTCACAGAACATCACAGAACATCACTGAGCAGGTGGCTTGA  598

seq1  ACAGCAAACATGCATTTGTCACAGTTATGGAGACTGGAAATCCAAGAGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACATGCATTTGTCACAGTTATGGAGACTGGAAATCCAAGAGCA  648

seq1  GGTGCCAGCATTCTTAACTCTTAGAGAGGGCTCTCTTCTTTGTTATGTCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGCATTCTTAACTCTTAGAGAGGGCTCTCTTCTTTGTTATGTCA  698

seq1  TTGCACGATTTCTGTGGGTGAAGGAGGGAAAGAGAGGGAGAATCAGAGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACGATTTCTGTGGGTGAAGGAGGGAAAGAGAGGGAGAATCAGAGAC  748

seq1  AGAGACAAATGGAGTGAGACAGAGAGACAGAGACAAGAGACAAACAGAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAATGGAGTGAGACAGAGAGACAGAGACAAGAGACAAACAGAAG  798

seq1  GAGAGAGACCAAGACAGACAGAGACAGGCAGAGAAAGACAAACAGTGAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACCAAGACAGACAGAGACAGGCAGAGAAAGACAAACAGTGAGA  848

seq1  GAGACAGAGCGTAGTAACCACCAGGTAGTGTTCTAGGGTAAGAGAACCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGCGTAGTAACCACCAGGTAGTGTTCTAGGGTAAGAGAACCAC  898

seq1  ATGAGAACAAAACAGGCATCTAACATTCACTCTGGACCTTATGCCAATGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAACAAAACAGGCATCTAACATTCACTCTGGACCTTATGCCAATGC  948

seq1  AGAAAGATAGACAACAACTAACACGAGTAGTTACAACACAGAACGCATCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATAGACAACAACTAACACGAGTAGTTACAACACAGAACGCATCA  998

seq1  GCAGGAGGAAAAACTGTTCAAGAGAATGAGATGGCATTTGAATCATTTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGAAAAACTGTTCAAGAGAATGAGATGGCATTTGAATCATTTGA  1048

seq1  ATTCAGACCAAAAGTGGCACTGAATTC  1072
      |||||||||||||||||||||||||||
seq2  ATTCAGACCAAAAGTGGCACTGAATTC  1075