BAC Information

Click to search

BAC

Clone NameB6Ng01-197O16
Chromosome7 (Build37)
Map Location 9,109,962 - 9,267,152
singlet/doubletdoublet
Overlap geneEG628145, EG545909, LOC100042039, LOC100042781
Upstream geneLOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110
Downstream geneLOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197O16.bB6Ng01-197O16.g
ACCGA019654GA019655
length1,0801,111
definitionB6Ng01-197O16.b B6Ng01-197O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,109,962 - 9,111,044)(9,266,052 - 9,267,152)
sequence
gaattcaatgctaacagggtctacagacagagttccatggacagccaggg
agggctacatggagagatcctgcctcaaacaacaacaaaaacaacacaac
ttcaaacaaaaatacaatgacagtcagaagacataacactctagcacgtt
ggttctcaacatgtggatcatgatcttttaggggatatgtaagaccatca
ggaaacacagatatttacactaagattcatgacagtagtgaaactacagt
tatgaggtagaaatgataatttatggctggggatcaccataactagagga
actgtgataaagggtcctaggattagaaagagtgagcaccactgctcttg
cacatggttgcctaaagtggaaatccagcatgagtgatatgataaggtgg
aaagcagctacataaatttaatcatctgaatcgacatggtaggtgaaaaa
aagtgacttttccaaattgtactctgacttgcataagtgtagggacatac
acacgcacaccccttttttaggtgagtaagaactcatgaatttattgtct
tcattacaaaatcagcatagaactagatcactgtgcattggtgtttgcta
catctctgtctgcatctgtctctttgtctctctctgtctctcagtcactc
tggttggtttgttttttgtttgctttttgagacagggtttctctgtgtag
ctctggctgtcctgaaactcactctgtagtccaggctggccttgaacttt
atcatctgcctgacatgtgtgccactgccacatggctgcaaacaaaatct
ttataagagtaaaattaataaataaataggactgtaagactggatcacta
tcagggacatcagccctctgcctgggcttaggacccacacaccagggtgc
tgcaacaaccaggtaagctaagaattctctgctaccacatccagcatcaa
caggccagcagacagggatgttcagagggcacatgatagggcgtttgtac
ccaagccttagaccagtatatgtgtgtgcagactttagtctgtatcagct
tccagggaaatcctttttctctctccttct
gaattcattccctatgacactttgagcctctgacttctactgggaaaaga
tgtataataggtactggagaatttactagctcaaacttgttgacacagaa
acaacacagaattgaacaggtaggctgtatgtatatatacatacttatat
gtgtgagttcatgtgaaggtagatattgcattattgtatttaagtgattc
ctgtcataagtcataggaagaaggtggaatatgagaggaaatataatgtt
tatgtttgaatagtagaaaatattaatgaaataagccctaagatgtttcc
tcatctggcaatcattaatcaaaagttctggttattgttcatgatgtgca
ctcattttagcactgaaggaaaaatatctctgtagatactttgtactaaa
agttccttcaccttgattccttcttcatatggaaagctgaatactttaat
ccttgcctcacctccatttgtatgagaatcaaagatgaaatcagtgctga
gaaacagaatgagcaaaatcacagaggaatcctctggaaagggaggtaac
ccagatggtttgtgataagcaattatactccattctaaaattgtaatccc
caacatggtaacaacatgaacagtgattgcaattgcacttaatttccaag
tcatttcagagaatgttgatgtgcttccttggttttcagaattcttatct
acaacaatgcatttgtggacaaatattatttgataagttgcctaagagcc
taagaagttaaattagatataaatagaatatgtttgttctaccagagaat
ctgagtttcagatctcagtacccatgacagatatctcacaagtaaatatt
aaattttaatgacagtagtattatttgctcatatgtgcacgtgttttatg
tgtttatccacctccaacacacttaagcaaataatgcaataaaatatttt
atggaatttttgtatttaattttgaatgtacatattaaatttttttacgt
ctaatacaatttgtaactttttaaatttgtttcaagttacagtataatgt
ttaaaatgtatgacttcaaagacaacttagttgattgctgttttacctcc
atgcatcatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9109962_9111044
seq2: B6Ng01-197O16.b_44_1123

seq1  GAATTCAATGCTAACAGGGTCTACAGACAGAGTTCCATGGACAGCCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCTAACAGGGTCTACAGACAGAGTTCCATGGACAGCCAGGG  50

seq1  AGGGCTACATGGAGAGATCCTGCCTCAAACAACAACAAAAACAACACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACATGGAGAGATCCTGCCTCAAACAACAACAAAAACAACACAAC  100

seq1  TTCAAACAAAAATACAATGACAGTCAGAAGACATAACACTCTAGCACGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAAAAATACAATGACAGTCAGAAGACATAACACTCTAGCACGTT  150

seq1  GGTTCTCAACATGTGGATCATGATCTTTTAGGGGATATGTAAGACCATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAACATGTGGATCATGATCTTTTAGGGGATATGTAAGACCATCA  200

seq1  GGAAACACAGATATTTACACTAAGATTCATGACAGTAGTGAAACTACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGATATTTACACTAAGATTCATGACAGTAGTGAAACTACAGT  250

seq1  TATGAGGTAGAAATGATAATTTATGGCTGGGGATCACCATAACTAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTAGAAATGATAATTTATGGCTGGGGATCACCATAACTAGAGGA  300

seq1  ACTGTGATAAAGGGTCCTAGGATTAGAAAGAGTGAGCACCACTGCTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATAAAGGGTCCTAGGATTAGAAAGAGTGAGCACCACTGCTCTTG  350

seq1  CACATGGTTGCCTAAAGTGGAAATCCAGCATGAGTGATATGATAAGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTGCCTAAAGTGGAAATCCAGCATGAGTGATATGATAAGGTGG  400

seq1  AAAGCAGCTACATAAATTTAATCATCTGAATCGACATGGTAGGTGAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTACATAAATTTAATCATCTGAATCGACATGGTAGGTGAAAAA  450

seq1  AAGTGACTTTTCCAAATTGTACTCTGACTTGCATAAGTGTAGGGACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTTTTCCAAATTGTACTCTGACTTGCATAAGTGTAGGGACATAC  500

seq1  ACACGCACACCCCTTTTTTAGGTGAGTAAGAACTCATGAATTTATTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACACCCCTTTTTTAGGTGAGTAAGAACTCATGAATTTATTGTCT  550

seq1  TCATTACAAAATCAGCATAGAACTAGATCACTGTGCATTGGTGTTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAAAATCAGCATAGAACTAGATCACTGTGCATTGGTGTTTGCTA  600

seq1  CATCTCTGTCTGCATCTGTCTCTTTGTCTCTCTCTGTCTCTCAGTCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGTCTGCATCTGTCTCTTTGTCTCTCTCTGTCTCTCAGTCACTC  650

seq1  TGGTTGGTTTGTTTTTTGTTTGCTTTTTGAGACAGGGTTTCTCTGTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTTGTTTTTTGTTTGCTTTTTGAGACAGGGTTTCTCTGTGTAG  700

seq1  CTCTGGCTGTCCTGAAACTCACTCTGTAGTCCAGGCTGGCCTTGAACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGTCCTGAAACTCACTCTGTAGTCCAGGCTGGCCTTGAACTTT  750

seq1  ATCATCTGCCTGACATGTGTGCCACTGCCACATGGCTGCAAACAAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGCCTGACATGTGTGCCACTGCCACATGGCTGCAAACAAAATCT  800

seq1  TTATAAGAGTAAAATTAATAAATAAATAGGACTGTAAGACTGGATCACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGAGTAAAATTAATAAATAAATAGGACTGTAAGACTGGATCACTA  850

seq1  TCAGGGACATCAGCCCTCTGCCTGGGCTTAGGACCCACACACCAGGGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACATCAGCCCTCTGCCTGGGCTTAGGACCCACACACCAGGGTGC  900

seq1  TGCAACAACCAGGTAAGCTAAGAATTCTCTGCTACCACATCCAGCATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACAACCAGGTAAGCTAAGAATTCTCTGCTACCACATCCAGCATCAA  950

seq1  CAGGCCAGCAGACAGGGATGTCCAGAGGGGCACATGAATAGGGGCGTTTG  1000
      ||||||||||||||||||||| |||| ||||||||| ||| |||||||||
seq2  CAGGCCAGCAGACAGGGATGTTCAGA-GGGCACATG-ATA-GGGCGTTTG  997

seq1  TACCCAAGGCTTAGACCAGTTATATTGTGGTGGTGCAGACTTTAGTCCTG  1050
      |||||||| |||||||||| |||| ||||   |||||||||||||| |||
seq2  TACCCAAGCCTTAGACCAG-TATA-TGTG--TGTGCAGACTTTAGT-CTG  1042

seq1  TATCAGCTCCAGGGGAAATCCTTT-----TCTCCTTCT  1083
      |||||||| |  ||||||||||||     |||||||||
seq2  TATCAGCTTCCAGGGAAATCCTTTTTCTCTCTCCTTCT  1080

seq1: chr7_9266052_9267152
seq2: B6Ng01-197O16.g_68_1178 (reverse)

seq1  CCATGATGCATGGA-GTAAAACCAAGCAATCTACTAAGTTGTCTTTTGAA  49
      |||||||||||||| |||||||  ||||||| ||||||||||| ||||||
seq2  CCATGATGCATGGAGGTAAAAC--AGCAATCAACTAAGTTGTC-TTTGAA  47

seq1  GTCATACATTTT-AACA-TATACTGT-ACTTGAAAACAAATTT--AAAGT  94
      |||||||||||| |||| |||||||| ||||| ||||||||||  |||||
seq2  GTCATACATTTTAAACATTATACTGTAACTTG-AAACAAATTTAAAAAGT  96

seq1  ATACAAAATTGTATTAGACGTAAAAAAA-TTAATATGTACA-TCAAAATT  142
       ||| ||||||||||||||||||||||| |||||||||||| ||||||||
seq2  -TAC-AAATTGTATTAGACGTAAAAAAATTTAATATGTACATTCAAAATT  144

seq1  AAATACAAAAATTCCATAAAATATTTTATTGCATTATTTGCTTAAGTGTG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAAATTCCATAAAATATTTTATTGCATTATTTGCTTAAGTGTG  194

seq1  -TGGA-GTGGAT-AACACAT-ATACACGTGCACATATGAGCAAATAATAC  238
       |||| |||||| ||||||| | |||||||||||||||||||||||||||
seq2  TTGGAGGTGGATAAACACATAAAACACGTGCACATATGAGCAAATAATAC  244

seq1  TACTGTCATTAAA--TTTATATTTACTTGTGAGATATCTGTCATGGGTAC  286
      |||||||||||||  || ||||||||||||||||||||||||||||||||
seq2  TACTGTCATTAAAATTTAATATTTACTTGTGAGATATCTGTCATGGGTAC  294

seq1  TGAGATCTG-AACTCAGATTCTCTGGTAGAAC-AACATATTCTATTTATA  334
      ||||||||| |||||||||||||||||||||| |||||||||||||||||
seq2  TGAGATCTGAAACTCAGATTCTCTGGTAGAACAAACATATTCTATTTATA  344

seq1  TCTAATTTAACTTCTTAGGCTCTTAGGCAACTTATCAAATAATATTTGTC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTAACTTCTTAGGCTCTTAGGCAACTTATCAAATAATATTTGTC  394

seq1  CACAAATGCATTGTTGTAGATAAGAATTCTGAAAACCAAGGAAGCACATC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATGCATTGTTGTAGATAAGAATTCTGAAAACCAAGGAAGCACATC  444

seq1  AACATTCTCTGAAATGACTTGGAAATTAAGTGCAATTGCAATCACTGTTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTCTGAAATGACTTGGAAATTAAGTGCAATTGCAATCACTGTTC  494

seq1  ATGTTGTTACCATGTTGGGGATTACAATTTTAGAATGGAGTATAATTGCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTTACCATGTTGGGGATTACAATTTTAGAATGGAGTATAATTGCT  544

seq1  TATCACAAACCATCTGGGTTACCTCCCTTTCCAGAGGATTCCTCTGTGAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAACCATCTGGGTTACCTCCCTTTCCAGAGGATTCCTCTGTGAT  594

seq1  TTTGCTCATTCTGTTTCTCAGCACTGATTTCATCTTTGATTCTCATACAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATTCTGTTTCTCAGCACTGATTTCATCTTTGATTCTCATACAA  644

seq1  ATGGAGGTGAGGCAAGGATTAAAGTATTCAGCTTTCCATATGAAGAAGGA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGTGAGGCAAGGATTAAAGTATTCAGCTTTCCATATGAAGAAGGA  694

seq1  ATCAAGGTGAAGGAACTTTTAGTACAAAGTATCTACAGAGATATTTTTCC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTGAAGGAACTTTTAGTACAAAGTATCTACAGAGATATTTTTCC  744

seq1  TTCAGTGCTAAAATGAGTGCACATCATGAACAATAACCAGAACTTTTGAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCTAAAATGAGTGCACATCATGAACAATAACCAGAACTTTTGAT  794

seq1  TAATGATTGCCAGATGAGGAAACATCTTAGGGCTTATTTCATTAATATTT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTGCCAGATGAGGAAACATCTTAGGGCTTATTTCATTAATATTT  844

seq1  TCTACTATTCAAACATAAACATTATATTTCCTCTCATATTCCACCTTCTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATTCAAACATAAACATTATATTTCCTCTCATATTCCACCTTCTT  894

seq1  CCTATGACTTATGACAGGAATCACTTAAATACAATAATGCAATATCTACC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGACTTATGACAGGAATCACTTAAATACAATAATGCAATATCTACC  944

seq1  TTCACATGAACTCACACATATAAGTATGTATATATACATACAGCCTACCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGAACTCACACATATAAGTATGTATATATACATACAGCCTACCT  994

seq1  GTTCAATTCTGTGTTGTTTCTGTGTCAACAAGTTTGAGCTAGTAAATTCT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCTGTGTTGTTTCTGTGTCAACAAGTTTGAGCTAGTAAATTCT  1044

seq1  CCAGTACCTATTATACATCTTTTCCCAGTAGAAGTCAGAGGCTCAAAGTG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACCTATTATACATCTTTTCCCAGTAGAAGTCAGAGGCTCAAAGTG  1094

seq1  TCATAGGGAATGAATTC  1101
      |||||||||||||||||
seq2  TCATAGGGAATGAATTC  1111