BAC Information

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BAC

Clone NameB6Ng01-198I06
Chromosome7 (Build37)
Map Location 125,457,096 - 125,598,080
singlet/doubletdoublet
Overlap geneSyt17, LOC100042845
Upstream geneXylt1, LOC669758, Rps15a, Arl6ip1, 2610207I05Rik, LOC100043339
Downstream geneE030018N11Rik, Coq7, Tmc7, B230311B06Rik, Tmc5, Mir16, 6330503K22Rik, 9030624J02Rik, 2310008H09Rik, Iqck, Gprc5b, Gpr139, LOC100042871, Gp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198I06.bB6Ng01-198I06.g
ACCGA020092GA020093
length1,100991
definitionB6Ng01-198I06.b B6Ng01-198I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,457,096 - 125,458,170)(125,597,091 - 125,598,080)
sequence
gaattcacaagccaaagcattcaacccccttttggagtcaggtgtggggg
tgcacaactttcatcccagcactcgggaggcagaagaaggtggatctctg
agttcaaggccagcctggtctacagagagttctaggacagcccgggctat
gcagagaaaccctgtctgataaaaaccaaatagctgtgattttcttacga
tactgtaactgcccacttaatatttccaccaatgtagtttaaaaacacct
tgattttaagaccttctcggttctgttagtataaaaatctttataatatg
ttttccttagggcttgcagagacggctcagtgattaagagcaccggttac
tcttccagaggaccaggctcaattcctagcctccacaaggtggctcacag
tgctctgttaactccagtcccaggggatctgatgccctcttcaggccctc
ataggcatcaggcagagatttgtggtgacctaaactgtatttccaagcca
tagtcacatgtacttggctacagaataaactacctcttattcctttggat
gctagaggtgtgttgtttgtgttcatagaaggctaggttatttgcgtgtg
tgctgggagctccgacttcgccgtctgttttctcgtggagcccagagcct
cgtacatgcatagcgctccaccatcctgctgcaatccgagcaagcccgag
tctttgtaaaagccagcagtgctttgtctccatctgcttttcatttccag
gcatgttctagcagcatcctttgtggcttggcgcccgtgttttagagtgt
gatttcagcacagggctctctctaagtcaggaccacttttgcccaatcag
gattcaggtcatattgcaggcttgggctcttccctggaccaggcagggag
ccccagggttctagttagccctgctgccacttctcttcaagggcttatta
agctggggagacagaagcctaaatgtctcccaaaagatccctgtaataat
taggttagcacttgtcttgcaaggtgcccgtgacctcaaatgctcaatcc
cgccacacctcatttgcctctgaagtggaacagaaaccatgttgtcatga

gaattctgatgggtatgcagcatagcttgaggtctggggaccctgtttca
gactatccgtttaattagctttgagctttcttactgcccaggcattctgg
gtagaaacacagcccaggaagggatacagggaacaggtgaaggacatgtt
ttatatgccatagaattaaaagggacttgggcaacaggtttcatcagtga
gaatggccagaatcgatagtaactaaaccagaagctgtgtggcccgatgg
gtggcaacagctgtttctgccatccgggcacttttcaatgataacaggta
gtctacggccagagactgcactcccacccctaattcccttctgaagactg
ttattatgtggatgcttctgccccacagggcttggtgctctaaggaaatg
gctggctcatcttaagagctggagatggcagaggcaccaccagaggaact
ggataccagttcccagagaccctgcattaggagggatagaattccagaaa
catctctacttctctctggcctagacgggccatgcctacctcggggtggg
accagtgcttctgtctccagtatatttttcttagaaagccagcctctcct
gccaccgtcctcatcagacagtggcttgtgatgccacacatgtttggctg
cctgcccagtcttattctagcaagtgtgctgggtcctctgactcagtaag
ggaccaaaacaggaccattacatgtgacagaaagtgtctcttcattggga
ccacaaacataaaaatgtacacgaaggacttttttttcccccctttttgc
ctcaggaagcaaatctatcctaggagagaaaaatactctgaaagaagctg
caagtgtgatagaggcagggattccatggctgctaggttacccctgatgc
cagctgtctctggaaggatttgccattgatttcccagctaaagagcccat
gcattctctctctctctctctctctctctctctctctcgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_125457096_125458170
seq2: B6Ng01-198I06.b_47_1146

seq1  GAATTCACAAGCCAAAGCATTCAACCCCCTTTTGGAGTCAGGTGTGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGCCAAAGCATTCAACCCCCTTTTGGAGTCAGGTGTGGGGG  50

seq1  TGCACAACTTTCATCCCAGCACTCGGGAGGCAGAAGAAGGTGGATCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAACTTTCATCCCAGCACTCGGGAGGCAGAAGAAGGTGGATCTCTG  100

seq1  AGTTCAAGGCCAGCCTGGTCTACAGAGAGTTCTAGGACAGCCCGGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGGCCAGCCTGGTCTACAGAGAGTTCTAGGACAGCCCGGGCTAT  150

seq1  GCAGAGAAACCCTGTCTGATAAAAACCAAATAGCTGTGATTTTCTTACGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAAACCCTGTCTGATAAAAACCAAATAGCTGTGATTTTCTTACGA  200

seq1  TACTGTAACTGCCCACTTAATATTTCCACCAATGTAGTTTAAAAACACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAACTGCCCACTTAATATTTCCACCAATGTAGTTTAAAAACACCT  250

seq1  TGATTTTAAGACCTTCTCGGTTCTGTTAGTATAAAAATCTTTATAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAAGACCTTCTCGGTTCTGTTAGTATAAAAATCTTTATAATATG  300

seq1  TTTTCCTTAGGGCTTGCAGAGACGGCTCAGTGATTAAGAGCACCGGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTAGGGCTTGCAGAGACGGCTCAGTGATTAAGAGCACCGGTTAC  350

seq1  TCTTCCAGAGGACCAGGCTCAATTCCTAGCCTCCACAAGGTGGCTCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGAGGACCAGGCTCAATTCCTAGCCTCCACAAGGTGGCTCACAG  400

seq1  TGCTCTGTTAACTCCAGTCCCAGGGGATCTGATGCCCTCTTCAGGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTTAACTCCAGTCCCAGGGGATCTGATGCCCTCTTCAGGCCCTC  450

seq1  ATAGGCATCAGGCAGAGATTTGTGGTGACCTAAACTGTATTTCCAAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATCAGGCAGAGATTTGTGGTGACCTAAACTGTATTTCCAAGCCA  500

seq1  TAGTCACATGTACTTGGCTACAGAATAAACTACCTCTTATTCCTTTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACATGTACTTGGCTACAGAATAAACTACCTCTTATTCCTTTGGAT  550

seq1  GCTAGAGGTGTGTTGTTTGTGTTCATAGAAGGCTAGGTTATTTGCGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGGTGTGTTGTTTGTGTTCATAGAAGGCTAGGTTATTTGCGTGTG  600

seq1  TGCTGGGAGCTCCGACTTCGCCGTCTGTTTTCTCGTGGAGCCCAGAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGAGCTCCGACTTCGCCGTCTGTTTTCTCGTGGAGCCCAGAGCCT  650

seq1  CGTACATGCATAGCGCTCCACCATCCTGCTGCAATCCGAGCAAGCCCGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACATGCATAGCGCTCCACCATCCTGCTGCAATCCGAGCAAGCCCGAG  700

seq1  TCTTTGTAAAAGCCAGCAGTGC-TTGTCTCCATCTGC-TTTCATTTCCAG  748
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TCTTTGTAAAAGCCAGCAGTGCTTTGTCTCCATCTGCTTTTCATTTCCAG  750

seq1  GCATGTTCTAGCAGCATCC-TTGTGGCTTGGCGCCCGTGTTTTAGAGTGT  797
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCATGTTCTAGCAGCATCCTTTGTGGCTTGGCGCCCGTGTTTTAGAGTGT  800

seq1  GA-TTCAGCACAGGGCTCTCTCTAAGTCAGGACCACTTT--GCCAATCAG  844
      || ||||||||||||||||||||||||||||||||||||   ||||||||
seq2  GATTTCAGCACAGGGCTCTCTCTAAGTCAGGACCACTTTTGCCCAATCAG  850

seq1  GA-TCAGGTCATATTGCAGGC-TGGGCTCT--CCTGGACCAGGCAGGGAG  890
      || |||||||||||||||||| ||||||||  ||||||||||||||||||
seq2  GATTCAGGTCATATTGCAGGCTTGGGCTCTTCCCTGGACCAGGCAGGGAG  900

seq1  CCCCAGG--TCCTGTTAG-CCTGCTGCCAC-TCTCCTC-AGGGC-TATT-  933
      |||||||  ||  ||||| ||||||||||| |||| || ||||| |||| 
seq2  CCCCAGGGTTCTAGTTAGCCCTGCTGCCACTTCTCTTCAAGGGCTTATTA  950

seq1  AGCTGGGGAGACAGAAGCC-AAATGTCTCCC-AAAGAT-CCTGGAA-AAT  979
      ||||||||||||||||||| ||||||||||| |||||| |||| || |||
seq2  AGCTGGGGAGACAGAAGCCTAAATGTCTCCCAAAAGATCCCTGTAATAAT  1000

seq1  TAGGTTAGCAC-TGTCTGGC-AGGTG-CCGTGA-CTCAGAGGCTCATCCC  1025
      ||||||||||| ||||| || ||||| |||||| |||| | |||||  ||
seq2  TAGGTTAGCACTTGTCTTGCAAGGTGCCCGTGACCTCAAATGCTCAATCC  1050

seq1  GGCCACAGCTCATTGGCC-CTGGAGTTGGAACAAGAACAATGTTGTCATG  1074
       |||||| |||||| ||| ||| || |||||||  ||| |||||||||||
seq2  CGCCACACCTCATTTGCCTCTGAAG-TGGAACAGAAACCATGTTGTCATG  1099

seq1  A  1075
      |
seq2  A  1100

seq1: chr7_125597091_125598080
seq2: B6Ng01-198I06.g_66_1056 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCATGGGCTCC  50
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCATGGGCTCT  50

seq1  TTAGCTGGGAAATCAATGGGCAAATCC-TCCAGAGACAGCTGGCATCAGG  99
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  TTAGCTGGGAAATCAAT-GGCAAATCCTTCCAGAGACAGCTGGCATCAGG  99

seq1  GGTAACCTAGCAGCCATGGAATCCCTGCCTCTATCACACTTGCAGCTTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCTAGCAGCCATGGAATCCCTGCCTCTATCACACTTGCAGCTTCT  149

seq1  TTCAGAGTATTTTTCTCTCCTAGGATAGATTTGCTTCCTGAGGC-AAAAG  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCAGAGTATTTTTCTCTCCTAGGATAGATTTGCTTCCTGAGGCAAAAAG  199

seq1  GGGGGAAAAAAAAGTCCTTCGTGTACATTTTTATGTTTGTGGTCCCAATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAAAAAAAGTCCTTCGTGTACATTTTTATGTTTGTGGTCCCAATG  249

seq1  AAGAGACACTTTCTGTCACATGTAATGGTCCTGTTTTGGTCCCTTACTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACTTTCTGTCACATGTAATGGTCCTGTTTTGGTCCCTTACTGA  299

seq1  GTCAGAGGACCCAGCACACTTGCTAGAATAAGACTGGGCAGGCAGCCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGGACCCAGCACACTTGCTAGAATAAGACTGGGCAGGCAGCCAAA  349

seq1  CATGTGTGGCATCACAAGCCACTGTCTGATGAGGACGGTGGCAGGAGAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGGCATCACAAGCCACTGTCTGATGAGGACGGTGGCAGGAGAGG  399

seq1  CTGGCTTTCTAAGAAAAATATACTGGAGACAGAAGCACTGGTCCCACCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTCTAAGAAAAATATACTGGAGACAGAAGCACTGGTCCCACCCC  449

seq1  GAGGTAGGCATGGCCCGTCTAGGCCAGAGAGAAGTAGAGATGTTTCTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGCATGGCCCGTCTAGGCCAGAGAGAAGTAGAGATGTTTCTGGA  499

seq1  ATTCTATCCCTCCTAATGCAGGGTCTCTGGGAACTGGTATCCAGTTCCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCCCTCCTAATGCAGGGTCTCTGGGAACTGGTATCCAGTTCCTC  549

seq1  TGGTGGTGCCTCTGCCATCTCCAGCTCTTAAGATGAGCCAGCCATTTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCCTCTGCCATCTCCAGCTCTTAAGATGAGCCAGCCATTTCCT  599

seq1  TAGAGCACCAAGCCCTGTGGGGCAGAAGCATCCACATAATAACAGTCTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCACCAAGCCCTGTGGGGCAGAAGCATCCACATAATAACAGTCTTC  649

seq1  AGAAGGGAATTAGGGGTGGGAGTGCAGTCTCTGGCCGTAGACTACCTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGAATTAGGGGTGGGAGTGCAGTCTCTGGCCGTAGACTACCTGTT  699

seq1  ATCATTGAAAAGTGCCCGGATGGCAGAAACAGCTGTTGCCACCCATCGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGAAAAGTGCCCGGATGGCAGAAACAGCTGTTGCCACCCATCGGG  749

seq1  CCACACAGCTTCTGGTTTAGTTACTATCGATTCTGGCCATTCTCACTGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGCTTCTGGTTTAGTTACTATCGATTCTGGCCATTCTCACTGAT  799

seq1  GAAACCTGTTGCCCAAGTCCCTTTTAATTCTATGGCATATAAAACATGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTTGCCCAAGTCCCTTTTAATTCTATGGCATATAAAACATGTC  849

seq1  CTTCACCTGTTCCCTGTATCCCTTCCTGGGCTGTGTTTCTACCCAGAATG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGTTCCCTGTATCCCTTCCTGGGCTGTGTTTCTACCCAGAATG  899

seq1  CCTGGGCAGTAAGAAAGCTCAAAGCTAATTAAACGGATAGTCTGAAACAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCAGTAAGAAAGCTCAAAGCTAATTAAACGGATAGTCTGAAACAG  949

seq1  GGTCCCCAGACCTCAAGCTATGCTGCATACCCATCAGAATTC  990
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCCAGACCTCAAGCTATGCTGCATACCCATCAGAATTC  991