BAC Information

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BAC

Clone NameB6Ng01-198K18
Chromosome7 (Build37)
Map Location 9,953,348 - 10,074,861
singlet/doubletdoublet
Overlap geneLOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113
Upstream geneV2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4
Downstream geneLOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198K18.bB6Ng01-198K18.g
ACCGA020208GA020209
length1,1381,172
definitionB6Ng01-198K18.b B6Ng01-198K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,953,348 - 9,954,474)(10,073,662 - 10,074,861)
sequence
gaattcactctggaaagaagcatttcaggtgaagtgagtgttgcaaaacc
ttcaaggacaactgcttccttgttactcatcagcgagttcacacagagga
gacacttttacatggactaaacgtggcaagtcatacattaacagatccag
tattttgactgcacgtatatgtgaatactaagtgcataactaatgcctat
gagagaccccccaaatgcattggattcctggaacaggacatacagatggg
tatgaagcagtctgtttcctggaaatgaaaccccggtcctctaccatagc
agaatatggacttacaagctgaaccctctctaaaatccatgttttacatt
tttaagaagttactagattttgttctaaaaggctgtgtgtttcagttttc
ctcctgttgcacatcagataccagtttgtcacatcctgacattttccaag
tcgtgaggtattcactttaacaattttagtaactatgttggctcaggcat
gatggtgcaggctttaatcccagcactcaggaggcagaggcagctgtagt
cagtgagttcaaggtcgtcatggtctaggagttccagatccttgtatacc
tttaagtgaatgctgtgaattgaaccaaagttatttgcaataagagtatg
tgctgttattcagtgagccattttcctgaccctgtatctatgtttccttt
tttgtttatatacagtcttaggatgttggtttggctagcttgttttctct
ctgtatcacaagttgtcctagaactcatagacctaccatattctgggttc
tgagtgctggtattaaagacatacccctctgggagatcaaaataaaccgg
tgttttcctgccttaaccattgccctgagtagattttgggtgctaggtct
gcacccaaccacacaacaccagaggatgctggacaacacaggtgttctaa
tacacccatgatcataggatcacagctttctttgggaatttgatcatgcc
aggatttcaggatcctagaggcacttgaactcccaggcactcttacatgc
cagattttcaggatcaatggcatcacaggtgacagcttgacttcttgaag
gagctctgataagtccaggaaaaacaggatggaacaag
gaattcctggccaatgataactcacacgcagagataagaagctgtccagg
tacatccagaaacttaaagatacatcccacttgggtcctgaaagctgaaa
tgaacacatagtctcttcattacagaaataattaggaatagggctttgtt
ttttttttatgaaataaatatggtgtaggtgttacagtttttccatcaca
aaggcccaaagtgtatcttataatcaaagacatatttggtaaaagatcag
gatttctgttgatttcatccattgcaaacaccaatgccaaagcatatttg
tggtttttagttgtttttctgtaaaagaatacagtgtttattatggacag
atgattatacatgagcatttgtactcaatagaagcactacactatactgg
aagtttctgcatctgacatctaaagacgggaacaaatggcttttgttata
agattggattgacagatggacctggaaaatagaaagcactttaaaaattt
atgacagtgttggtcccataattaagagatggtattgacctcatccacag
agataatttccatttttgtttttgagtgcttgatcagaaggaaaagagat
aaccacagatattgacaaaacagtaattctgatcatgtcttcattttgaa
attattgagcaataaatgtatttgttattagagccactgagttcatgata
ttttctcgtgaaattaactgaattggttaaggaaatgaaaccatagccag
gagtggtgtcattctcctttaatcccagcacttgggatgcagaagcaggt
ggatttctgagtttgaggccagcctggtctacaaagtgagttcccggaga
gccagagctatacagagaaaccctatctcaaaaaaaaaaaaagaaagaaa
agaaaggaaatagaataaagtaagaaggaccgaaggaaggagagaaggga
aagaaaaaaaggaagaaagaagagagaaataatcatactaataatattaa
taatgaaccgtgatttataatgcataacggtctctctcttcagcaacaat
tggattctgtactatatcattaacagtagaagtcaaaattcctgaccaat
tcgttcaatctatcctcatgctgtaatttcatctttatgaaataaaatat
ttctctaagggtctatttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9953348_9954474
seq2: B6Ng01-198K18.b_46_1183

seq1  GAATTCACTCTGGAAAGAAGCATTTCAGGTGAAGTGAGTGTTGCAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGGAAAGAAGCATTTCAGGTGAAGTGAGTGTTGCAAAACC  50

seq1  TTCAAGGACAACTGCTTCCTTGTTACTCATCAGCGAGTTCACACAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGACAACTGCTTCCTTGTTACTCATCAGCGAGTTCACACAGAGGA  100

seq1  GACACTTTTACATGGACTAAACGTGGCAAGTCATACATTAACAGATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTTTACATGGACTAAACGTGGCAAGTCATACATTAACAGATCCAG  150

seq1  TATTTTGACTGCATGTATATGTGAATACTAAGTGCATAACTAATGCCTAT  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTTTGACTGCACGTATATGTGAATACTAAGTGCATAACTAATGCCTAT  200

seq1  GAGAGACCCCCCAAATGCATTGGATTCCTGGAACAGGACATACAGATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCCCCAAATGCATTGGATTCCTGGAACAGGACATACAGATGGG  250

seq1  TATGAAGCAGTCTGTTTCCTGGAAATGAAACCCCGGTCCTCTACCATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGCAGTCTGTTTCCTGGAAATGAAACCCCGGTCCTCTACCATAGC  300

seq1  AGAATATGGACTTACACGCTGAACCCTCTCTAAAATCCATGTTTTACATT  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGAATATGGACTTACAAGCTGAACCCTCTCTAAAATCCATGTTTTACATT  350

seq1  TTTAAGAAGTTACTAGATTTTGTTCTAAAAGGCTGTGTGTTTCAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGTTACTAGATTTTGTTCTAAAAGGCTGTGTGTTTCAGTTTTC  400

seq1  CTCCTGTTGCACATCAGATACCAGTTTGTCACATCCTGACATTTTCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTGCACATCAGATACCAGTTTGTCACATCCTGACATTTTCCAAG  450

seq1  TCGTGAGGTATTCACTTTAACAATTTTAGTAACTATGTTGGCTCAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGAGGTATTCACTTTAACAATTTTAGTAACTATGTTGGCTCAGGCAT  500

seq1  GATGGTGCAGGCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGCTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCAGGCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGCTGTAGT  550

seq1  CAGTGAGTTCAAGGTCGTCATGGTCTAGGAGTTCCAGATCCTTGTATACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTTCAAGGTCGTCATGGTCTAGGAGTTCCAGATCCTTGTATACC  600

seq1  TTTAAGTGAATGCTGTGAATTGAACCAAAGTTATTTGCAATAAGAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGAATGCTGTGAATTGAACCAAAGTTATTTGCAATAAGAGTATG  650

seq1  TGCTGTTATTCAGTGAGCCATTTTCCTGACCCTGTATCTATGTTTCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTATTCAGTGAGCCATTTTCCTGACCCTGTATCTATGTTTCCTTT  700

seq1  TTTGTTTATATACAGTCTTAGGATGTTGGTTTGGCTAGCTTG-TTTCTCT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTGTTTATATACAGTCTTAGGATGTTGGTTTGGCTAGCTTGTTTTCTCT  750

seq1  CTGTATCACAAGTTGTCCTAGAACTCATAGACCTACCATATTCTGGGTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCACAAGTTGTCCTAGAACTCATAGACCTACCATATTCTGGGTTC  800

seq1  TGAGTGCTGGTATTAAAGACATACCCCTCTGGGAGATCAAAATAAACCGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCTGGTATTAAAGACATACCCCTCTGGGAGATCAAAATAAACCGG  850

seq1  TGTTTTCCTGCCTTAACCATTGCCCTGAGTAGATTTTGGGTGCTAGGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCCTGCCTTAACCATTGCCCTGAGTAGATTTTGGGTGCTAGGTCT  900

seq1  GCACCCAACCACACAACACCCAGAGGATGCTGGAC-ACACAGGTGTTCTA  948
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  GCACCCAACCACACAACA-CCAGAGGATGCTGGACAACACAGGTGTTCTA  949

seq1  ATACACCCATGATCATAGGATCACAGC-TTCTTT-GGAATTTGATCATGC  996
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  ATACACCCATGATCATAGGATCACAGCTTTCTTTGGGAATTTGATCATGC  999

seq1  CAGGATTTCAGGATCCTAGAGGCACCTTGACTCCCAGGCACTCTTACATG  1046
      ||||||||||||||||||||||||| |  |||||||||||||||||||||
seq2  CAGGATTTCAGGATCCTAGAGGCACTTGAACTCCCAGGCACTCTTACATG  1049

seq1  -CAGAATTTCAGGATCAATGG-ATCACA-GAGACAGCTGGAC-TCT--GA  1090
       |||| ||||||||||||||| |||||| | ||||||| ||| |||   |
seq2  CCAGATTTTCAGGATCAATGGCATCACAGGTGACAGCTTGACTTCTTGAA  1099

seq1  GGAGCTCTGATAAATCCAGG-AAAACAAGATGG-ACAAG  1127
      ||||||||||||| |||||| |||||| ||||| |||||
seq2  GGAGCTCTGATAAGTCCAGGAAAAACAGGATGGAACAAG  1138

seq1: chr7_10073662_10074861
seq2: B6Ng01-198K18.g_68_1239 (reverse)

seq1  TTAAAAATAAAACTTTAGA-AAATATTTTATTTCAATAAAAGATTGAAAA  49
      ||||||||| | | ||||| |||||||||||||| |||||     ||  |
seq2  TTAAAAATAGACCCTTAGAGAAATATTTTATTTC-ATAAA-----GATGA  44

seq1  AATAACAGCATGAGGATAGATATGAAGGGATGTGTCAAGAATTTTGACCT  99
      ||| ||||||||||||||||| |||| | ||  |||| |||||||||| |
seq2  AATTACAGCATGAGGATAGAT-TGAACGAATTGGTCAGGAATTTTGACTT  93

seq1  CTAATTGTAAATGATTATAAGTACAGGAATCAAATGTTGCTGAAGAGAGA  149
      || | ||| ||||| ||| ||||||| |  ||| ||||||||||||||||
seq2  CT-ACTGTTAATGA-TAT-AGTACAGAATCCAATTGTTGCTGAAGAGAGA  140

seq1  GACCGTTATGCATTAATAAATCATGGTTTCATTTATTTATTTATTTATTT  199
      |||||||||||||| |||||||| || ||||             ||||| 
seq2  GACCGTTATGCATT-ATAAATCACGG-TTCA-------------TTATTA  175

seq1  ATTTATTTATTTATTTATTTATTTCTCTCTTTCTTTCTTCCTTTTTTTCT  249
      ||    |||||  | |  ||||||||||| ||||||||||||||||||||
seq2  AT---ATTATTAGTATGATTATTTCTCTC-TTCTTTCTTCCTTTTTTTCT  221

seq1  TT-CCTTCTCTCTTTCTTTCGTTCTTTCTTACTTTTTTCTATTTTCTTTT  298
      || ||||||||| ||| |||| || |||||||||| |||||||| |  ||
seq2  TTCCCTTCTCTCCTTCCTTCGGTCCTTCTTACTTTATTCTATTTCC--TT  269

seq1  TCTTTTCTTTCTTTCTTTTTTTTTTGAGATAGGGTTTCTCTGTATAGCTC  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCTTT-TTTTTTTTTTGAGATAGGGTTTCTCTGTATAGCTC  318

seq1  TGGCTCTCCGGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCCGGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAA  368

seq1  ATCCACCTGCTTCTGCATCCCAAGTGCTGGGATTAAAGGAGAATGACACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTGCTTCTGCATCCCAAGTGCTGGGATTAAAGGAGAATGACACC  418

seq1  ACTCCTGGCTATGGTTTCATTTCCTTAACCAATTCAGTTAATTTCACGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGGCTATGGTTTCATTTCCTTAACCAATTCAGTTAATTTCACGAG  468

seq1  AAAATATCATGAACTCAGTGGCTCTAATAACAAATACATTTATTGCTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCATGAACTCAGTGGCTCTAATAACAAATACATTTATTGCTCAA  518

seq1  TAATTTCAAAATGAAGACATGATCAGAATTACTGTTTTGTCAATATCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAAATGAAGACATGATCAGAATTACTGTTTTGTCAATATCTGT  568

seq1  GGTTATCTCTTTTCCTTCTGATCAAGCACTCAAAAACAAAAATGGAAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCTCTTTTCCTTCTGATCAAGCACTCAAAAACAAAAATGGAAATT  618

seq1  ATCTCTGTGGATGAGGTCAATACCATCTCTTAATTATGGGACCAACACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGGATGAGGTCAATACCATCTCTTAATTATGGGACCAACACTG  668

seq1  TCATAAATTTTTAAAGTGCTTTCTATTTTCCAGGTCCATCTGTCAATCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAATTTTTAAAGTGCTTTCTATTTTCCAGGTCCATCTGTCAATCCA  718

seq1  ATCTTATAACAAAAGCCATTTGTTCCCGTCTTTAGATGTCAGATGCAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAACAAAAGCCATTTGTTCCCGTCTTTAGATGTCAGATGCAGAA  768

seq1  ACTTCCAGTATAGTGTAGTGCTTCTATTGAGTACAAATGCTCATGTATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGTATAGTGTAGTGCTTCTATTGAGTACAAATGCTCATGTATAA  818

seq1  TCATCTGTCCATAATAAACACTGTACTCTTTTACAGAAAAACAACTAAAA  898
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCATCTGTCCATAATAAACACTGTATTCTTTTACAGAAAAACAACTAAAA  868

seq1  ACCAC-AATATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGA  947
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAATATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGA  918

seq1  AATCCTGATCTTTTACCAAATATGTCTTTGATTATAAGATACACTTTGGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGATCTTTTACCAAATATGTCTTTGATTATAAGATACACTTTGGG  968

seq1  CCTTTGTGATGGAAAAACTGTAACACCTACACCATATTTATTTCAT-AAA  1046
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTTGTGATGGAAAAACTGTAACACCTACACCATATTTATTTCATAAAA  1018

seq1  AAAAAACAAAGCCCTATTCCTAATTATTTCTGTAATGAAGAGACTATGTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAGCCCTATTCCTAATTATTTCTGTAATGAAGAGACTATGTG  1068

seq1  TTCATTTCAGCTTTCAGGACCCAAGTGGGATGTATCTTTAAGTTTCTGGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAGCTTTCAGGACCCAAGTGGGATGTATCTTTAAGTTTCTGGA  1118

seq1  TGTACCTGGACAGCTTCTTATCTCTGCGTGTGAGTTATCATTGGCCAGGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGGACAGCTTCTTATCTCTGCGTGTGAGTTATCATTGGCCAGGA  1168

seq1  ATTC  1200
      ||||
seq2  ATTC  1172