BAC Information

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BAC

Clone NameB6Ng01-199L04
Chromosome7 (Build37)17 (Build37)
Map Location 50,460,821 - 50,461,87717,224,234 - 17,224,703
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179, EG546965, LOC546964, LOC100039706, EG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620
Downstream geneZfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9, Klk1b10-ps, Klk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199L04.bB6Ng01-199L04.g
ACCGA020965GA020966
length1,0801,003
definitionB6Ng01-199L04.b B6Ng01-199L04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,460,821 - 50,461,877)(17,224,234 - 17,224,703)
sequence
gaattcctgatctctccatgacatttaacataaaggggtgctgtatttcg
tcattggcttttttggcatctaatgatatgatcatgtgatttttgttttt
cagtttgtttatatagtggaatatgttgatgaattttcatatgttgaacc
atcactgtatccctgggatgaagcctactagatcattgtgaatgatggtt
ttgatgtggtcttggaccttactgagtattctggttggttgtctgattgg
ttgtttggtgggtcgttttatcgagacagggtttctctgtatagacctgg
ctgtcctgggactcactctgtagaccaggctggcatcaaactcagaaatc
cagctgtctctgccccatgtgctgggattaaaggagtgatgcaactaggg
tgaggatcttatgcctacatccacagtgacacacctactccaacaaggtc
acaccaatgccaacaaggccacacctccaaaacgtgccactccctggtcc
aagaatatataaaccatcacactcagcaactctccagtcagaggctggtc
tttggcaagctgtcctgtgttggagctcaaatcttctttgtcaaaaggga
attatgcagccccacttctctggttttgccatcaacagcacacacaaaaa
ttgacacatagtctcagaccaaattaatcctttggccttcccaatatcct
gggatcactaaagtgttagagctccattggatttgaacatttctttaaga
gcttcccagtcatttaagattcctctgttgagaattctgtgtttagcttt
gtaccccatttgtaattgggatagtgctgctgggtgtctaacgtactgaa
tttttggtaaatgttgggatattagctctctgtcagatgttgttgttggt
aaagaccatttctcaaggcttgtagggcgccattttggtaccattggaca
gtttccttttccttcctggaaactttgccagttccattgaaggcccttat
tcatggattgttgattctttagagcctgaactcattggtatgctatcaag
gaaacctgtcctccctgtaaccaaataggt
gaattctttcatgagcttgaagatgactgtgagatacaaatgatttacca
cactgactacatttatagggtttctctccagtatgtgttcttttatgtat
taggagatgactctgttgtgaataggctttatcacattgattacatttga
agggtttctctccagtatgtattactttatgtgtttgaagataactgttt
tttgcaaaggctttgccacattgattacattcataaggtttctctccagt
atgtgttcttctatgcaagtgtaaagtacagtgatgtgcaaaagttttac
cacattgattacatacatagggtttctctccagtatgtgttctttcatga
actcgaagatacctgagctgtgaaaaggatttatcacattgattacattt
gtagggtttctctccagtatctgttcttttatgtatttggagactactat
gacatgcaaggacttcactatgttgaaagccttcagagggtttctcttga
gtttgaattccttcatgcttttgaagatgactatggtatgtgaaggcttt
atcacacagtatgtattcatactggttctctccagcaggatttctttcgt
gcctgcaataacaattgggacatgtaaaattttatcacattcattactga
tgaatcttttttatctgtgtcaattaattttacaacttggtctaattata
aagtagaatcggttcctaaggttttatcacattgtttagccttcactgtg
agtgttttgcatcattacagatactgatgatgggatgggtcatttattac
atggctcacttataccagactttttctatataaagtttctcacatatttg
aagacaactgcaagaactcagagctttaccactctggttgcattcataat
tttctttctttttctttttctttttttgtagaacatgattttagtatttt
ttaactgttaatattccaaaaagaacagaataagtatctttaaggatatg
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_50460821_50461877
seq2: B6Ng01-199L04.b_42_1115

seq1  GAATTCCTGATCTCTCCATGACATTTAACATAAAGGGGTGCTGTATTTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTCTCCATGACATTTAACATAAAGGGGTGCTGTATTTCG  50

seq1  TCATTGGCTTTTTTGGCATCTAATGATATGATCATGTGATTTTTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGCTTTTTTGGCATCTAATGATATGATCATGTGATTTTTGTTTTT  100

seq1  CAGTTTGTTTATATAGTGGAATATGTTGATGAATTTTCATATGTTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGTTTATATAGTGGAATATGTTGATGAATTTTCATATGTTGAACC  150

seq1  ATCACTGTATCCCTGGGATGAAGCCTACTAGATCATTGTGAATGATGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTATCCCTGGGATGAAGCCTACTAGATCATTGTGAATGATGGTT  200

seq1  TTGATGTGGTCTTGGACCTTACTGAGTATTCTGGTTGGTTGTCTGATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGGTCTTGGACCTTACTGAGTATTCTGGTTGGTTGTCTGATTGG  250

seq1  TTGTTTGGTGGGTCGTTTTATCGAGACAGGGTTTCTCTGTATAGACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGTGGGTCGTTTTATCGAGACAGGGTTTCTCTGTATAGACCTGG  300

seq1  CTGTCCTGGGACTCACTCTGTAGACCAGGCTGGCATCAAACTCAGAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGGACTCACTCTGTAGACCAGGCTGGCATCAAACTCAGAAATC  350

seq1  CAGCTGTCTCTGCCCCATGTGCTGGGATTAAAGGAGTGATGCAACTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCTCTGCCCCATGTGCTGGGATTAAAGGAGTGATGCAACTAGGG  400

seq1  TGAGGATCTTATGCCTACATCCACAGTGACACACCTACTCCAACAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCTTATGCCTACATCCACAGTGACACACCTACTCCAACAAGGTC  450

seq1  ACACCAATGCCAACAAGGCCACACCTCCAAAACGTGCCACTCCCTGGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATGCCAACAAGGCCACACCTCCAAAACGTGCCACTCCCTGGTCC  500

seq1  AAGAATATATAAACCATCACACTCAGCAACTCTCCAGTCAGAGGCTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATATAAACCATCACACTCAGCAACTCTCCAGTCAGAGGCTGGTC  550

seq1  TTTGGCAAGCTGTCCTGTGTTGGAGCTCAAATCTTCTTTGTCAAAAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCAAGCTGTCCTGTGTTGGAGCTCAAATCTTCTTTGTCAAAAGGGA  600

seq1  ATTATGCAGCCCCACTTCTCTGGTTTTGCCATCAACAGCACACACAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCAGCCCCACTTCTCTGGTTTTGCCATCAACAGCACACACAAAAA  650

seq1  TTGACACATAGTCTCAGACCAAATTATCCCTTTGTCCATCCCAATATCCT  700
      ||||||||||||||||||||||||||  |||||| || ||||||||||||
seq2  TTGACACATAGTCTCAGACCAAATTAATCCTTTGGCCTTCCCAATATCCT  700

seq1  GGGATCACTAAAGTGTTAGAGCTCCATTGGTCTTGAACATTTCTTTAAGT  750
      ||||||||||||||||||||||||||||||  ||||||||||||||||| 
seq2  GGGATCACTAAAGTGTTAGAGCTCCATTGGATTTGAACATTTCTTTAAGA  750

seq1  GTTTCCCAGTCATTTAAGATTCCTCTGTTGAGAATTCTGTGTTTAACTTT  800
      | ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GCTTCCCAGTCATTTAAGATTCCTCTGTTGAGAATTCTGTGTTTAGCTTT  800

seq1  GTACCCCATTTGTAATTGGATTATTTGTGTTGTTGGTGTCTAACTTCTTG  850
      |||||||||||||||||||  || |  || ||  |||||||||| |  ||
seq2  GTACCCCATTTGTAATTGGGATAGTGCTGCTG--GGTGTCTAACGTACTG  848

seq1  AATTTTTGGTAAAT-TTTGGATATTAGCTCTCTGTCAGATGTAG-GGTTG  898
      |||||||||||||| || |||||||||||||||||||||||| |  ||||
seq2  AATTTTTGGTAAATGTTGGGATATTAGCTCTCTGTCAGATGTTGTTGTTG  898

seq1  GTAAAGACCCTTTCTCA--GACTGTAGGGCGCCATTTTGTTA-CATT-GA  944
      ||||||||| |||||||  |  ||||||||||||||||| || |||| ||
seq2  GTAAAGACCATTTCTCAAGGCTTGTAGGGCGCCATTTTGGTACCATTGGA  948

seq1  CAGTTTCC-TTTCCTTCCT-GAAGCTTTG-CAGTTTCA-TGA--GGCCTT  988
      |||||||| |||||||||| ||| ||||| ||||| || |||  | ||||
seq2  CAGTTTCCTTTTCCTTCCTGGAAACTTTGCCAGTTCCATTGAAGGCCCTT  998

seq1  ATTCATTGATTGTTGAT--CTTAGAGCCTGAAC-CATTGGTATTCTGTTC  1035
      |||||| ||||||||||   ||||||||||||| ||||||||| || |  
seq2  ATTCATGGATTGTTGATTCTTTAGAGCCTGAACTCATTGGTATGCTATCA  1048

seq1  AGGAAA-CTGTC--TCCTGT-ACCAA  1057
      |||||| |||||   ||||| |||||
seq2  AGGAAACCTGTCCTCCCTGTAACCAA  1074

seq1: chr17_17224234_17224703
seq2: B6Ng01-199L04.g_130_401 (reverse)

seq1  ATACTGGAGAGAAACCCTTTGAATGTATTCAATATGATGGAGCCTTTGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAACCATCATCAGTTACATAAGGACACTGGATCTTTCATGTCTTATAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGATCGTCAAATACATAGAAGACCACACACTGAAGAAAAAGTCTATGATG  150
                                | |||| ||| |||  |||||   
seq2  --------------------------ATACTGGAGAGAAACCCTATGTAT  24

seq1  GTAACCAATGTGGTAAAACCTTTTCATGTCACAACCATTTTGAAATCCGT  200
      |||| |||||||||||||| ||| ||  ||||     |||  |  | | |
seq2  GTAATCAATGTGGTAAAACTTTTGCACATCACTGTACTTTACACTTGCAT  74

seq1  AAAGGAACATATACTGGAGAAAAACCCTATGAATGTAATCAATGTGGGAA  250
      | | ||||| |||||||||| ||||| |||||||||||||||||||| ||
seq2  AGAAGAACACATACTGGAGAGAAACCTTATGAATGTAATCAATGTGGCAA  124

seq1  AGCCTTTGCACGCCACAGCAATCTTCTAGACCATAAAAGAATACATACTG  300
      ||||||||||    ||||  |||||| |   ||||||  |||||||||||
seq2  AGCCTTTGCAAAAAACAGTTATCTTCAAACACATAAAGTAATACATACTG  174

seq1  GAGAGAAACCCTATAAATGTAAGCAATGTGGCAAAGACTTTACCCATCAC  350
      ||||||||||||  |||||||| |||||||  |||| || | | || || 
seq2  GAGAGAAACCCTTCAAATGTAATCAATGTGATAAAGCCTATTCACAACAG  224

seq1  AGTACTCTTCATATCCATAAAAGAATACATACTAGAGAGAAAACCTATAA  400
      |||  ||| |  || |||||||||| ||||||| |||||||| |||||  
seq2  AGTCATCTCCTAATACATAAAAGAACACATACTGGAGAGAAACCCTAT--  272

seq1  ATGTAACCAGTGTATGACCATTGCTCATCTTCAATGTCATAAAATAACAC  450
                                                        
seq2  --------------------------------------------------  272

seq1  ATACTGGAGAGAAACCCTAT  470
                          
seq2  --------------------  272