BAC Information

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BAC

Clone NameB6Ng01-199M12
Chromosome7 (Build37)
Map Location 19,567,501 - 19,758,702
singlet/doubletdoublet
Overlap geneNanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr
Upstream geneCeacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2
Downstream geneEml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199M12.bB6Ng01-199M12.g
ACCGA021023GA021024
length786844
definitionB6Ng01-199M12.b B6Ng01-199M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,567,501 - 19,568,286)(19,757,863 - 19,758,702)
sequence
gaattcttgatatgtgccaccaaatctggcttaatcacactttttcaaaa
ttttaaaatctcatttatttatttatttatttatttaggcatgaggcaca
tgcaagtgtgctgtagaggtctgaggtcaaatttcaggagttggttctct
tatttcatcctgtggaagaaccatatagctggatatagtggtatacagct
gtagtctaggagcttgagagatggaggcaggcagggggatcaccaattaa
tgcctattaattatagcatgggctatacaataaaacccaacctctggaaa
aaaaagattaattacagtaaatgaataaactttagttgtagtctgatgat
tctgtggcacatgagcctcagtttctccatctggaaagtgggggtaaatc
tcctaatttttccttggtgcctgcctttctgaaggtttgcaatcctcacc
ccatccacctgtttgaaaccccttgtctgttttctagccagaggaggtca
gacagaagaggaaactcggaagtaaacagggccatggacccctgcagggc
cagggcgtgggtagcataactctgcacagtaaacaccaggttgggcagtg
tctcatcaatttcacctctggttttttttttttccacctgtctacaccac
ctacagagtgggcttaaagaagtaattgcaaacatccaaaaaacaccttc
agacctaggaggaagaaggccatacctaagtaactatgtaagacatgaaa
caaaagaaaacaaataaggtgggagtgggggggggg
gaattctctgggcctcaacttcatctagaatatgggggttatatatcttc
actacaaatcctcctgcctgaacttccctgaggctcgatctgggctacac
cctcagcccagcctttcacgttccttgcttagtaaggaccacccaaacca
atctacaaccaccagggggcagtcggggacccccgtagttgcactcggcc
gctggcgtggggtgaagggaagtttgcagaggatttggaggtggaggaag
gctggcgctgtctgcagagcctcagccgagagtcgctcttctgccctcca
tcctggcctctagagcccccaccccacccagtgcgacattatgtcaacac
aaccctacggttgcttctggcctgaacaatatttgccttggggatctgga
tcggtcgctatggataccggcacccccccaggaccggaagaggctaaaga
gagccaactgcatctgcctgatctccctcggattttgtcttggaggcagt
ttgatacagtcttttcattctggactctgtctctctctgtcttcctctct
gggaagagtcattaagttaggtatcctatcgctcatctctttctctgttc
ttcactcactgtgcgtgctgtcttttctctgttttctgtcttgcctgatc
cccatttccctgggtttcctgtctcattgaaactcactcaaaccttcaat
tttttttccatgaggctgggtctcaactaggccaggctgtcttcaaactc
tctgtgtagccaaaggtgaccttgaacttccaccctccttgtcttccacc
cttcctggtgttgggactacaggcatgtataccacatctggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19567501_19568286
seq2: B6Ng01-199M12.b_48_833

seq1  GAATTCTTGATATGTGCCACCAAATCTGGCTTAATCACACTTTTTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATATGTGCCACCAAATCTGGCTTAATCACACTTTTTCAAAA  50

seq1  TTTTAAAATCTCATTTATTTATTTATTTATTTATTTAGGCATGAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATCTCATTTATTTATTTATTTATTTATTTAGGCATGAGGCACA  100

seq1  TGCAAGTGTGCTGTAGAGGTCTGAGGTCAAATTTCAGGAGTTGGTTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTGTGCTGTAGAGGTCTGAGGTCAAATTTCAGGAGTTGGTTCTCT  150

seq1  TATTTCATCCTGTGGAAGAACCATATAGCTGGATATAGTGGTATACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATCCTGTGGAAGAACCATATAGCTGGATATAGTGGTATACAGCT  200

seq1  GTAGTCTAGGAGCTTGAGAGATGGAGGCAGGCAGGGGGATCACCAATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTAGGAGCTTGAGAGATGGAGGCAGGCAGGGGGATCACCAATTAA  250

seq1  TGCCTATTAATTATAGCATGGGCTATACAATAAAACCCAACCTCTGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATTAATTATAGCATGGGCTATACAATAAAACCCAACCTCTGGAAA  300

seq1  AAAAAGATTAATTACAGTAAATGAATAAACTTTAGTTGTAGTCTGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATTAATTACAGTAAATGAATAAACTTTAGTTGTAGTCTGATGAT  350

seq1  TCTGTGGCACATGAGCCTCAGTTTCTCCATCTGGAAAGTGGGGGTAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCACATGAGCCTCAGTTTCTCCATCTGGAAAGTGGGGGTAAATC  400

seq1  TCCTAATTTTTCCTTGGTGCCTGCCTTTCTGAAGGTTTGCAATCCTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATTTTTCCTTGGTGCCTGCCTTTCTGAAGGTTTGCAATCCTCACC  450

seq1  CCATCCACCTGTTTGAAACCCCTTGTCTGTTTTCTAGCCAGAGGAGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACCTGTTTGAAACCCCTTGTCTGTTTTCTAGCCAGAGGAGGTCA  500

seq1  GACAGAAGAGGAAACTCGGAAGTAAACAGGGCCATGGACCCCTGCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGAGGAAACTCGGAAGTAAACAGGGCCATGGACCCCTGCAGGGC  550

seq1  CAGGGCGTGGGTAGCATAACTCTGCACAGTAAACACCAGGTTGGGCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGTGGGTAGCATAACTCTGCACAGTAAACACCAGGTTGGGCAGTG  600

seq1  TCTCATCAATTTCACCTCTGGTTTTTTTTTTTTCCACCTGTCTACACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCAATTTCACCTCTGGTTTTTTTTTTTTCCACCTGTCTACACCAC  650

seq1  CTACAGAGTGGGCTTAAAGAAGTAATTGCAAACATCCAAAAAACACCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGGGCTTAAAGAAGTAATTGCAAACATCCAAAAAACACCTTC  700

seq1  AGACCTAGGAGGAAGAAGGCCATACCTAAGTAACTATGTAAGACATGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGGAGGAAGAAGGCCATACCTAAGTAACTATGTAAGACATGAAA  750

seq1  CAAAAGAAAACAAATAAGGTGGGAGTGGGGGGGGGG  786
      ||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAACAAATAAGGTGGGAGTGGGGGGGGGG  786

seq1: chr7_19757863_19758702
seq2: B6Ng01-199M12.g_69_912 (reverse)

seq1  AAACCAGATGTGGTATACATGCCTGTAGTCCCAACACCAGG-AGGGTGG-  48
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  AAACCAGATGTGGTATACATGCCTGTAGTCCCAACACCAGGAAGGGTGGA  50

seq1  AGACAA-GAGGGTGGGAAGTTCAAGGTCACCTTTGGCTACACAGAGAGTT  97
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGAGGGT-GGAAGTTCAAGGTCACCTTTGGCTACACAGAGAGTT  99

seq1  TGAAGACAGCCTGGCCTAGTTGAGACCCAGCCTCATGGAAAAAAAATTGA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCCTGGCCTAGTTGAGACCCAGCCTCATGGAAAAAAAATTGA  149

seq1  AGGTTTGAGTGAGTTTCAATGAGACAGGAAACCCAGGGAAATGGGGATCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGAGTGAGTTTCAATGAGACAGGAAACCCAGGGAAATGGGGATCA  199

seq1  GGCAAGACAG-AAACAGAG-AAAGACAGCACGCACAGTGAGTGAAGAACA  245
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  GGCAAGACAGAAAACAGAGAAAAGACAGCACGCACAGTGAGTGAAGAACA  249

seq1  GAGAAAGAGATGAGCGATAGGATACCTAACTTAATGACTCTTCCCAGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGATGAGCGATAGGATACCTAACTTAATGACTCTTCCCAGAGA  299

seq1  GGAAGACAGAGAGAGACAGAGTCCAGAATGAAAAGACTGTATCAAACTGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGAGAGAGACAGAGTCCAGAATGAAAAGACTGTATCAAACTGC  349

seq1  CTCCAAGACAAAATCCGAGGGAGATCAGGCAGATGCAGTTGGCTCTCTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGACAAAATCCGAGGGAGATCAGGCAGATGCAGTTGGCTCTCTTT  399

seq1  AGCCTCTTCCGGTCCTGGGGGGGTGCCGGTATCCATAGCGACCGATCCAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTCCGGTCCTGGGGGGGTGCCGGTATCCATAGCGACCGATCCAG  449

seq1  ATCCCCAAGGCAAATATTGTTCAGGCCAGAAGCAACCGTAGGGTTGTGTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAAGGCAAATATTGTTCAGGCCAGAAGCAACCGTAGGGTTGTGTT  499

seq1  GACATAATGTCGCACTGGGTGGGGTGGGGGCTCTAGAGGCCAGGATGGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATGTCGCACTGGGTGGGGTGGGGGCTCTAGAGGCCAGGATGGAG  549

seq1  GGCAGAAGAGCGACTCTCGGCTGAGGCTCTGCAGACAGCGCCAGCCTTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGAGCGACTCTCGGCTGAGGCTCTGCAGACAGCGCCAGCCTTCC  599

seq1  TCCACCTCCAAATCCTCTGCAAACTTCCCTTCACCCCACGCCAGCGGCCG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCCAAATCCTCTGCAAACTTCCCTTCACCCCACGCCAGCGGCCG  649

seq1  AGTGCAACTACGGGGGTCCCCGACTGCCCCCTGGTGGTTGTAGATTGGTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACTACGGGGGTCCCCGACTGCCCCCTGGTGGTTGTAGATTGGTT  699

seq1  TGGGTGGTCCTTACTAAGCAAGGAACGTGAAAGGCTGGGCTGAGGGTGTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTCCTTACTAAGCAAGGAACGTGAAAGGCTGGGCTGAGGGTGTA  749

seq1  GCCCAGATCGAGCCTCAGGGAAGTTCAGGCAGGAGGATTTGTAGTGAAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGATCGAGCCTCAGGGAAGTTCAGGCAGGAGGATTTGTAGTGAAGA  799

seq1  TATATAACCCCCATATTCTAGATGAAGTTGAGGCCCAGAGAATTC  840
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCCCCATATTCTAGATGAAGTTGAGGCCCAGAGAATTC  844