BAC Information

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BAC

Clone NameB6Ng01-200C12
Chromosome7 (Build37)
Map Location 145,166,674 - 145,351,798
singlet/doubletdoublet
Overlap geneLOC435235
Upstream geneMgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneTcerg1l, LOC100043290, Mapk1ip1, Ppp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200C12.bB6Ng01-200C12.g
ACCGA021296GA021297
length4431,095
definitionB6Ng01-200C12.b B6Ng01-200C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,166,674 - 145,167,122)(145,350,713 - 145,351,798)
sequence
atagggccacagtgaggccagaggagaaacagttgtacggatgtgctgtt
ggtgacttgatggatgcacagcacgaggacgatgaagcaaagaccagacc
ttggatcctccaaagtttccagacattggaatgaggcagctatatagcaa
aggtggtaaagatacaagaacagagttttttcagctattgccagcagtaa
ctgagttttcagttgactctccatgtagaatcatttcacagtatgtcatc
acagggtttcagatggcagcgcccctcagaggatccagcagcagctgcca
gaatgaatggctttagagagtccctagcaccagagccaaggaggagagct
ggcctgggtaggtcacaagaggccttctttactgctattgggatcaggct
catgcacagggagggtgggagtgagagaaagagggaaggaagg
gaattctaaccttacaagtttgcctgggcctttgtacactgaaccttgag
acatggacctgaccagacctaagggtcagagtgcaatccacagtaggtca
ctgacctgtcaggaggggatcaccttgccctttgtgcaatctgaggaatg
cctctgaagtgcttaaaattaattagcatagctaattatcaagaaagcag
gagattggggaaacattttaaattaaagcaggatagaaagaacaaagtcc
cctttaagtctcagctttgctaagccatgacatgccaggacaaaaggaca
gtagccatggggactgaatgtgaaggaggggccaagagaaggccaggcta
gaactccaggtactgaaaatggactccagaagatgaggagggctgtctcc
acaacatttaaaaagaaaaacacccaattcaaaatgggatacagtcgctt
tactgcgtttaagaaccccatcaaaataaaacatggttatagagaaatag
agccaggatgggccatctccattgggcctcatgaagggaatcctaggtga
aggactgcactgagcacgagagaaagccagctctgagaaagggctgcagt
gtgacgagctgtgccacacaggttgtaagtatggttaaagctgaatgaga
tggactagaagaccatgacaggtgtgctgggttcctggtcgtcagtgtta
aaacttgactatggacctgggaggtgtgagcagcctgaagtattcggtgg
agtctgcttctctggcagaaactaaagtatttctcagctttacggctgat
cgacaagttgaaaattccaggataactgtgtagtatagccagaagaacta
ggagaggctatggggccagcagagcaagtgtttgggggagcttgttaagg
agtacatgtgctttgaataatcctgcctgtaagttactcagggtttagag
aggccctgtgacatgtgtgcaggagctagtccaggagacttctatctaga
ctccttctggtgtgtcctccaaggacaacattttcaacttgaagaattat
tctaaggccttcttttgaaacggtggcacaagtggtcataggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_145166674_145167122
seq2: B6Ng01-200C12.b_46_494

seq1  GAATTCATAGGGCCACAGTGAGGCCAGAGGAGAAACAGTTGTACGGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGGCCACAGTGAGGCCAGAGGAGAAACAGTTGTACGGATGT  50

seq1  GCTGTTGGTGACTTGATGGATGCACAGCACGAGGACGATGAAGCAAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGTGACTTGATGGATGCACAGCACGAGGACGATGAAGCAAAGAC  100

seq1  CAGACCTTGGATCCTCCAAAGTTTCCAGACATTGGAATGAGGCAGCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTTGGATCCTCCAAAGTTTCCAGACATTGGAATGAGGCAGCTATA  150

seq1  TAGCAAAGGTGGTAAAGATACAAGAACAGAGTTTTTTCAGCTATTGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGGTGGTAAAGATACAAGAACAGAGTTTTTTCAGCTATTGCCAG  200

seq1  CAGTAACTGAGTTTTCAGTTGACTCTCCATGTAGAATCATTTCACAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGAGTTTTCAGTTGACTCTCCATGTAGAATCATTTCACAGTAT  250

seq1  GTCATCACAGGGTTTCAGATGGCAGCGCCCCTCAGAGGATCCAGCAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACAGGGTTTCAGATGGCAGCGCCCCTCAGAGGATCCAGCAGCAG  300

seq1  CTGCCAGAATGAATGGCTTTAGAGAGTCCCTAGCACCAGAGCCAAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAATGAATGGCTTTAGAGAGTCCCTAGCACCAGAGCCAAGGAGG  350

seq1  AGAGCTGGCCTGGGTAGGTCACAAGAGGCCTTCTTTACTGCTATTGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGCCTGGGTAGGTCACAAGAGGCCTTCTTTACTGCTATTGGGAT  400

seq1  CAGGCTCATGCACAGGGAGGGTGGGAGTGAGAGAAAGAGGGAAGGAAGG  449
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCATGCACAGGGAGGGTGGGAGTGAGAGAAAGAGGGAAGGAAGG  449

seq1: chr7_145350713_145351798
seq2: B6Ng01-200C12.g_69_1163 (reverse)

seq1  TAACCTATGACCACTGTTGCCA-CGTTCAAAAAGAA-GCCTAGGTAT-AT  47
      |||||||||||||||  ||||| ||||  ||||||| ||||  | || ||
seq2  TAACCTATGACCACTTGTGCCACCGTTTCAAAAGAAGGCCTTAGAATAAT  50

seq1  TCTTCAGGT--GAAATGTTGTCCTGGGAGGGACACA-CAGAGGGAGTCTA  94
      |||||| ||   |||||||||||| ||| ||||||| |||| ||||||||
seq2  TCTTCAAGTTGAAAATGTTGTCCTTGGA-GGACACACCAGAAGGAGTCTA  99

seq1  GATAGAAGTCTCCTGGACTAGCCTCCTGCACACATGTCACA-GGCCTCTC  143
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  GATAGAAGTCTCCTGGACTAG-CTCCTGCACACATGTCACAGGGCCTCTC  148

seq1  TAAACCCTGAGTAACTTACAGGCAGGATTATTC-AAGCACATGTACTCCT  192
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAACCCTGAGTAACTTACAGGCAGGATTATTCAAAGCACATGTACTCCT  198

seq1  TA--CAGCTCCCCC-AACCCCTGCTCTGCTGGCCCCATAGCCTCTCCTAG  239
      ||   ||||||||| ||| | |||||||||||||||||||||||||||||
seq2  TAACAAGCTCCCCCAAACACTTGCTCTGCTGGCCCCATAGCCTCTCCTAG  248

seq1  TTCTTCTGGCTATACTACACAGTTATCCTGGAATTTTCAACTTGTCGATC  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGCTATACTACACAGTTATCCTGGAATTTTCAACTTGTCGATC  298

seq1  AGCCGTAAAGCTGAGAAATACTTTAGTTTCTGCCAGAGAAGCAGACTCCA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGTAAAGCTGAGAAATACTTTAGTTTCTGCCAGAGAAGCAGACTCCA  348

seq1  CCGAATACTTCAGGCTGCTCACACCTCCCAGGTCCATAGTCAAGTTTTAA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATACTTCAGGCTGCTCACACCTCCCAGGTCCATAGTCAAGTTTTAA  398

seq1  CACTGACGACCAGGAACCCAGCACACCTGTCATGGTCTTCTAGTCCATCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACGACCAGGAACCCAGCACACCTGTCATGGTCTTCTAGTCCATCT  448

seq1  CATTCAGCTTTAACCATACTTACAACCTGTGTGGCACAGCTCGTCACACT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGCTTTAACCATACTTACAACCTGTGTGGCACAGCTCGTCACACT  498

seq1  GCAGCCCTTTCTCAGAGCTGGCTTTCTCTCGTGCTCAGTGCAGTCCTTCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTTTCTCAGAGCTGGCTTTCTCTCGTGCTCAGTGCAGTCCTTCA  548

seq1  CCTAGGATTCCCTTCATGAGGCCCAATGGAGATGGCCCATCCTGGCTCTA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATTCCCTTCATGAGGCCCAATGGAGATGGCCCATCCTGGCTCTA  598

seq1  TTTCTCTATAACCATGTTTTATTTTGATGGGGTTCTTAAACGCAGTAAAG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATAACCATGTTTTATTTTGATGGGGTTCTTAAACGCAGTAAAG  648

seq1  CGACTGTATCCCATTTTGAATTGGGTGTTTTTCTTTTTAAATGTTGTGGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGTATCCCATTTTGAATTGGGTGTTTTTCTTTTTAAATGTTGTGGA  698

seq1  GACAGCCCTCCTCATCTTCTGGAGTCCATTTTCAGTACCTGGAGTTCTAG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCTCCTCATCTTCTGGAGTCCATTTTCAGTACCTGGAGTTCTAG  748

seq1  CCTGGCCTTCTCTTGGCCCCTCCTTCACATTCAGTCCCCATGGCTACTGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCTTCTCTTGGCCCCTCCTTCACATTCAGTCCCCATGGCTACTGT  798

seq1  CCTTTTGTCCTGGCATGTCATGGCTTAGCAAAGCTGAGACTTAAAGGGGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGTCCTGGCATGTCATGGCTTAGCAAAGCTGAGACTTAAAGGGGA  848

seq1  CTTTGTTCTTTCTATCCTGCTTTAATTTAAAATGTTTCCCCAATCTCCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTTTCTATCCTGCTTTAATTTAAAATGTTTCCCCAATCTCCTG  898

seq1  CTTTCTTGATAATTAGCTATGCTAATTAATTTTAAGCACTTCAGAGGCAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTGATAATTAGCTATGCTAATTAATTTTAAGCACTTCAGAGGCAT  948

seq1  TCCTCAGATTGCACAAAGGGCAAGGTGATCCCCTCCTGACAGGTCAGTGA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGATTGCACAAAGGGCAAGGTGATCCCCTCCTGACAGGTCAGTGA  998

seq1  CCTACTGTGGATTGCACTCTGACCCTTAGGTCTGGTCAGGTCCATGTCTC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGGATTGCACTCTGACCCTTAGGTCTGGTCAGGTCCATGTCTC  1048

seq1  AAGGTTCAGTGTACAAAGGCCCAGGCAAACTTGTAAGGTTAGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAGTGTACAAAGGCCCAGGCAAACTTGTAAGGTTAGAATTC  1095