BAC Information

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BAC

Clone NameB6Ng01-200L24
Chromosome7 (Build37)
Map Location 64,105,935 - 64,254,486
singlet/doubletdoublet
Overlap geneGabrg3
Upstream geneCyfip1, Nipa2, Nipa1, LOC672959, Herc2, p, LOC100040839
Downstream geneGabra5, Gabrb3, EG668807, LOC434189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200L24.bB6Ng01-200L24.g
ACCGA021724GA021725
length1,1121,104
definitionB6Ng01-200L24.b B6Ng01-200L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,253,374 - 64,254,486)(64,105,935 - 64,107,034)
sequence
gaattctttgttcagttctgagccccatttttaaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcttttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttatcacctgagtttttgatcttagccattctgactggtgtgaggtggaa
tctcagggttgttttgatttgcatttccctgatgattaaggatgctgaac
attttttcaggtgcttcttagccattcggtattcctcagatgagaattct
ttgtttagctctgagccccattttttaatgtggttatttgattttctggg
gtccagcttcttgagctctttgtatatattggatattagtcccctacaac
tttatgaagaaaatttgacagcggcttttaatctctcttctattatgcct
tcctcacttctctttctcctattcttgtcttcctttccttcatccaccgc
ttttgctgagacggtgctgctgggctgggctgattcctgagttttactct
ggccccagcagcttcttttgcccaggtatttaccttactgtgctaagcac
agtgccaatgggaggcaactgcagtgggagagagactttgctggaagtcc
agattagtgagtatgcctagcaaccacaggtctctctttttctcagagaa
gggaaaaatctgggaggaagtgatttatgaatctttcaggagttacagat
ggatattattaaggagcatgatttttcttctgttttgtcaaaatgctcca
catggtgtaggacttcccagtttattttggcatcattaagccctttaatt
actaacacaagataagctcagaactttcaaccaacacagaaggttgttta
cacagggagggttctgagcaatctcacctgttaatttagtagaatttcca
catgataccttcattgcattatgaatgtggtaaatcctgtttatttttag
aagaaatttacagaggtggcttttttctctgaggaaagagggaatgatta
ttgctattaaaa
gaattcattttgagatatttcttgccccacttttcttttcttcttttgag
aactctgttcagatcccaagcccatttttgaatgggtcatttgttttgtt
gacattggattttttatttccttatatattctagatattaatccactgtt
gtatttatagctgggaaagatttatttccattgtggaggcttctgcttca
cttcactttgtttttggctatgcacatactttttagttttaggaggtgcc
acaccatgttatgtttaacttcatactttatattgttttgacattttcat
taacattggtattttaggagttggctttacaaattgtaaagtgtatttta
ataattttaataatattttaataattttaatattttaataatttgcttta
gtccgattatagaataacttcctcttttttgtaatgacacacagtatgta
aattactggtattaactaagacaaagtagaagtggaaaaactatctttgc
caacagatatgtaaactgcaacagtagataagaaataaagaatagcaacc
tctcaactagtacattctaaggtactaaaatgggtagaattccagatgaa
gggttgaaagtttaatttaaaaactgatcaatagaatcagatagacaaaa
aggcagactaataacatatgggaaaattcaggagatgaagaaagtgaaca
accatgatgagaaaaacaatgacatagaaaagaaatttaatacggatatt
tgggagggagggagccatagagaatttttgaaaatgaaaacattagtgaa
tcagacaaaaactaccatagaatccattgtagcaaacaataccaagtaca
agacaaaatatacggggttgaaagaaaagataataaaatactcacacaga
tatcaacagtgaaaaaatcatgaatataaattccaagatctatgagctat
taattaaaggagaccaaatgaaataattatgtgggtagaaagagaaaaat
aaaacctaaaaaacagccagccagtggttggcgaacacctttaatctcag
catttaggagtagaagcaagttgaatttctgagaatgagccagcctgttc
taca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_64253374_64254486
seq2: B6Ng01-200L24.b_48_1159 (reverse)

seq1  TTTTAATGGCATTAATCA-TCCCTCTTTTCCTCAGAGGAAAAAG-CACTC  48
      ||||||| ||| |||||| |||||| ||||||||||| |||||| |||  
seq2  TTTTAATAGCAATAATCATTCCCTC-TTTCCTCAGAGAAAAAAGCCACCT  49

seq1  TTGTAATTTCTTTCTAAAAATAAACAGGATTTTACACAATTCATAATTGG  98
       ||||| ||  |||||||||||||||||||||  ||| |||||||||  |
seq2  CTGTAAATTTCTTCTAAAAATAAACAGGATTTACCAC-ATTCATAAT--G  96

seq1  CAATGAAGGTATCATGTGGGAAATTCTACTAAATTTAACAGGTGAGATTG  148
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  CAATGAAGGTATCATGT-GGAAATTCTACTAAA-TTAACAGGTGAGATTG  144

seq1  CTCAGAACCCTCCCTGTGTAAACA--CCTCTGTGTTGG-TGGAGGTTCTG  195
      ||||||||||||||||||||||||  | |||||||||| || | ||||||
seq2  CTCAGAACCCTCCCTGTGTAAACAACCTTCTGTGTTGGTTGAAAGTTCTG  194

seq1  AGCTTATCTTTGTGTTAGTAATTAAAGGGCTTAATGATGCCAAAATAAAC  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATC-TTGTGTTAGTAATTAAAGGGCTTAATGATGCCAAAATAAAC  243

seq1  TGGG-AGTCCTACACCATGTGGAGCATTTTGACAAAACAGAAGAAAAATC  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGTCCTACACCATGTGGAGCATTTTGACAAAACAGAAGAAAAATC  293

seq1  ATGCTCCTTAATAATATCCATCTGTAACTCCTGAAAGATTCATAAATCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCTTAATAATATCCATCTGTAACTCCTGAAAGATTCATAAATCAC  343

seq1  TTCCTCCCAGATTTTTCCCTTCTCTGAGAAAAAGAGAGACCTGTGGTTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCAGATTTTTCCCTTCTCTGAGAAAAAGAGAGACCTGTGGTTGC  393

seq1  TAGGCATACTCACTAATCTGGACTTCCAGCAAAGTCTCTCTCCCACTGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATACTCACTAATCTGGACTTCCAGCAAAGTCTCTCTCCCACTGCA  443

seq1  GTTGCCTCCCATTGGCACTGTGCTTAGCACAGTAAGGTAAATACCTGGGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTCCCATTGGCACTGTGCTTAGCACAGTAAGGTAAATACCTGGGC  493

seq1  AAAAGAAGCTGCTGGGGCCAGAGTAAAACTCAGGAATCAGCCCAGCCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCTGCTGGGGCCAGAGTAAAACTCAGGAATCAGCCCAGCCCAG  543

seq1  CAGCACCGTCTCAGCAAAAGCGGTGGATGAAGGAAAGGAAGACAAGAATA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCGTCTCAGCAAAAGCGGTGGATGAAGGAAAGGAAGACAAGAATA  593

seq1  GGAGAAAGAGAAGTGAGGAAGGCATAATAGAAGAGAGATTAAAAGCCGCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAGAAGTGAGGAAGGCATAATAGAAGAGAGATTAAAAGCCGCT  643

seq1  GTCAAATTTTCTTCATAAAGTTGTAGGGGACTAATATCCAATATATACAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTTTCTTCATAAAGTTGTAGGGGACTAATATCCAATATATACAA  693

seq1  AGAGCTCAAGAAGCTGGACCCCAGAAAATCAAATAACCACATTAAAAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTCAAGAAGCTGGACCCCAGAAAATCAAATAACCACATTAAAAAAT  743

seq1  GGGGCTCAGAGCTAAACAAAGAATTCTCATCTGAGGAATACCGAATGGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAGAGCTAAACAAAGAATTCTCATCTGAGGAATACCGAATGGCT  793

seq1  AAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCA  843

seq1  AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA  893

seq1  TCAAAAACTCAGGTGATAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACTCAGGTGATAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGA  943

seq1  CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAAGATCTTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAAGATCTTTA  993

seq1  CCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTC  1043

seq1  AAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTTAAAAATGGGGCTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTTAAAAATGGGGCTC  1093

seq1  AGAACTGAACAAAGAATTC  1113
      |||||||||||||||||||
seq2  AGAACTGAACAAAGAATTC  1112

seq1: chr7_64105935_64107034
seq2: B6Ng01-200L24.g_66_1169

seq1  GAATTCATTTTGAGATATTTCTTGCCCCACTTTTCTTTTCTTCTTTTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGAGATATTTCTTGCCCCACTTTTCTTTTCTTCTTTTGAG  50

seq1  AACTCTGTTCAGATCCCAAGCCCATTTTTGAATGGGTCATTTGTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTTCAGATCCCAAGCCCATTTTTGAATGGGTCATTTGTTTTGTT  100

seq1  GACATTGGATTTTTTATTTCCTTATATATTCTAGATATTAATCCACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGGATTTTTTATTTCCTTATATATTCTAGATATTAATCCACTGTT  150

seq1  GTATTTATAGCTGGGAAAGATTTATTTCCATTGTGGAGGCTTCTGCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATAGCTGGGAAAGATTTATTTCCATTGTGGAGGCTTCTGCTTCA  200

seq1  CTTCACTTTGTTTTTGGCTATGCACATACTTTTTAGTTTTAGGAGGTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTTGTTTTTGGCTATGCACATACTTTTTAGTTTTAGGAGGTGCC  250

seq1  ACACCATGTTATGTTTAACTTCATACTTTATATTGTTTTGACATTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGTTATGTTTAACTTCATACTTTATATTGTTTTGACATTTTCAT  300

seq1  TAACATTGGTATTTTAGGAGTTGGCTTTACAAATTGTAAAGTGTATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTGGTATTTTAGGAGTTGGCTTTACAAATTGTAAAGTGTATTTTA  350

seq1  ATAATTTTAATAATATTTTAATAATTTTAATATTTTAATAATTTGCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAATAATATTTTAATAATTTTAATATTTTAATAATTTGCTTTA  400

seq1  GTCCGATTATAGAATAACTTCCTCTTTTTTGTAATGACACACAGTATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGATTATAGAATAACTTCCTCTTTTTTGTAATGACACACAGTATGTA  450

seq1  AATTACTGGTATTAACTAAGACAAAGTAGAAGTGGAAAAACTATCTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGGTATTAACTAAGACAAAGTAGAAGTGGAAAAACTATCTTTGC  500

seq1  CAACAGATATGTAAACTGCAACAGTAGATAAGAAATAAAGAATAGCAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATATGTAAACTGCAACAGTAGATAAGAAATAAAGAATAGCAACC  550

seq1  TCTCAACTAGTACATTCTAAGGTACTAAAATGGGTAGAATTCCAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTAGTACATTCTAAGGTACTAAAATGGGTAGAATTCCAGATGAA  600

seq1  GGGTTGAAAGTTTAATTTAAAAACTGATCAATAGAATCAGATAGACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAAAGTTTAATTTAAAAACTGATCAATAGAATCAGATAGACAAAA  650

seq1  AGGCAGACTAATAACATATGGGAAAATTCAGGAGATGAAGAAAGTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACTAATAACATATGGGAAAATTCAGGAGATGAAGAAAGTGAACA  700

seq1  ACCATGATGAGAAAAACAATGACATAGAAAAGAAATTTAATACGGATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGATGAGAAAAACAATGACATAGAAAAGAAATTTAATACGGATATT  750

seq1  TGGGAGGGAGGGAGCCATAGAGAATTTTTGAAAATGAAAACATTAGTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGAGGGAGCCATAGAGAATTTTTGAAAATGAAAACATTAGTGAA  800

seq1  TCAGACAAAAACTACCATAGAATCCATTGTAGCAAACAATACCAAGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAAAACTACCATAGAATCCATTGTAGCAAACAATACCAAGTACA  850

seq1  AGACAAAATATACGGGGTTGAAAGAAAAGATAATAAAATACTCACACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAATATACGGGGTTGAAAGAAAAGATAATAAAATACTCACACAGA  900

seq1  TATCAACAGTGAAAAAAATCATGAATATAAATTCCAAGATCTATGAGCTA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATCAACAGTG-AAAAAATCATGAATATAAATTCCAAGATCTATGAGCTA  949

seq1  -TAAT--AAAGAGACCAAATGAAATAATTTATGT-GGTAG-AAGAGAAAA  995
       ||||  || ||||||||||||||||| |||||| ||||| |||||||||
seq2  TTAATTAAAGGAGACCAAATGAAATAA-TTATGTGGGTAGAAAGAGAAAA  998

seq1  ATAAAAACT-AAAAACAGCCAGGCAGTGG-TGGCGAACACCTTTAATCCC  1043
      |||||| || |||||||||||| |||||| |||||||||||||||||| |
seq2  ATAAAACCTAAAAAACAGCCAGCCAGTGGTTGGCGAACACCTTTAATCTC  1048

seq1  AGCATTTAGGAGGTAGAAGC-AGGTGGATTTCTGAGATTGAGGCCAGCCT  1092
      ||||||||||| |||||||| || || |||||||||| ||| ||||||||
seq2  AGCATTTAGGA-GTAGAAGCAAGTTGAATTTCTGAGAATGA-GCCAGCCT  1096

seq1  GGTCTACA  1100
      | ||||||
seq2  GTTCTACA  1104