BAC Information

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BAC

Clone NameB6Ng01-201B20
Chromosome7 (Build37)
Map Location 148,935,419 - 149,104,149
singlet/doubletdoublet
Overlap geneMuc2, Muc5ac, Muc5b, Tollip
Upstream geneCyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649
Downstream geneEG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201B20.bB6Ng01-201B20.g
ACCGA021980GA021981
length797987
definitionB6Ng01-201B20.b B6Ng01-201B20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,935,419 - 148,936,182)(149,103,161 - 149,104,149)
sequence
gaattccacactcttggtggaaggctgcttctgtcctttaaggcaccaca
aagtttgcccctggctatgacgtctgtgtgaagacatgtggtatgctcct
acctccatcaccccactcctgtttcctctgtgtacatagaggcaaagcta
ggaggctgatcctagttccctaaaatatcatgacagtgttaacagagttt
gtttcctctctctttctaggatgtgtgggacctgacaatgtgcccagaga
ggtaggttcccccttgagctaggagaattctccctaaaatcctgagcttt
ggggaatgagtggggcagagtgaatatgacagcctgggaggctcaaggac
tgagtcatgagccatgtaagtcctagtaggtgagattcctccactcatcc
tcctgctcattggtgcatctctccatcaattcattgtccagtcatctatc
aatacaattaacaatgtattatcatctatttatccatccacccatccatc
cacttgcctatccattttcaatctgaccacccatcaatctacccaatacc
catccatccatccatccatccacccacccatccatccatccatccatcca
tccatccatccatccacccacccatccatccatccatccatccatccatc
catccatccatccatccacccatccatccatccatccatccatccatcca
tccatccatccatccatccactcacccatccacccatccatccatccacc
cacccacccacccatccatccatccatccatccatccatccatccat
gaattcttgtaacacccctccactgaaggggctcacaaagaggcataggg
ggggataaaggaaaaaaattacacacgcattggttacttttctgttgcta
tgataaaacactgtgacctaagcaatttaatgaagagagagtttattttg
gcttctggttccagatgggtaagagtccatgatagcaatgtgaaagagaa
ttgggggtggtaccatactttgaaacctcaaagcctcaacactactggct
acttcctacagcaaggctgaacctcctgaacctccccagacagcaatgcc
aactgggcatcaggtgtgcaaattccagagtctatggggaactcaacact
cactcaaaccacctcaatttgcctccaaatactgctacatgttgaggtgt
taggagccagggtttcagcacacagatttggggcagacatgactgactca
ttctgtgacatggcgttgttgagactaccagcctcagaaacctaagtgcc
aaaacagaggagcaattctgctggggagggtgggacttccgaggcttccc
agagacacaagagaaagcagggacagttttgtgttagaagtggtcaggta
tgatagtgctatcgttcaaatctgggctttggtggatgaagctggaccaa
gtcactaaacggaatatttatccacagcttgaaggacaggcagcagagaa
tgacattgaactcatgagtttcctgctgctacctccgcagtgctgggatt
acaagtgtgtgcccctatgcacagctcttttctgtccacatcttttgccc
atttggctaagctgttgattttcttgttatttgggtataaggaattcttg
gtacattctgcataaaatcctttatctgattgggtaatttgcaaatattt
tcttgtccctggatgtctttttattctctttaacttttaaaaatttgatt
ggttgttattaatttgtgtgtgtgtctgatgtaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148935419_148936182
seq2: B6Ng01-201B20.b_45_841

seq1  GAATTCCACACTCTTGGTGGAAGGCTGCTTCTGTCC-TGAAGGCACCACA  49
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  GAATTCCACACTCTTGGTGGAAGGCTGCTTCTGTCCTTTAAGGCACCACA  50

seq1  AAGTTTGCCCCTGGCTATGACGTCTGTGTGAAGACATGTGGTATGCTCCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGCCCCTGGCTATGACGTCTGTGTGAAGACATGTGGTATGCTCCT  100

seq1  ACCTCCATCACCCCACTCCTGTTTCCTCTGTGTACATAGAGGCAAAGCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCATCACCCCACTCCTGTTTCCTCTGTGTACATAGAGGCAAAGCTA  150

seq1  GGAGGCTGATCCTAGTTCCCTAAAATATCATGACAGTGTTAACAGAGTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGATCCTAGTTCCCTAAAATATCATGACAGTGTTAACAGAGTTT  200

seq1  GTTTCCTCTCTCTTTCTAGGATGTGTGGGACCTGACAATGTGCCCAGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCTCTCTTTCTAGGATGTGTGGGACCTGACAATGTGCCCAGAGA  250

seq1  GGTAGGTTCCCCCTTGAGCTAGGAGAATTCTCCCTAAAATCCTGAGCTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGTTCCCCCTTGAGCTAGGAGAATTCTCCCTAAAATCCTGAGCTTT  300

seq1  GGGGAATGAGTGGGGCAGAGTGAATATGACAGCCTGGGAGGCTCAAGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATGAGTGGGGCAGAGTGAATATGACAGCCTGGGAGGCTCAAGGAC  350

seq1  TGAGTCATGAGCCATGTAAGTCCTAGTAGGTGAGATTCCTCCACTCATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATGAGCCATGTAAGTCCTAGTAGGTGAGATTCCTCCACTCATCC  400

seq1  TCCTGCTCATTGGTGCATCTCTCCATCAATTCATTGTCCAGTCATCTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTCATTGGTGCATCTCTCCATCAATTCATTGTCCAGTCATCTATC  450

seq1  AATACAATTAACAATGTATTATCATCTATTTATCCATCCACCCATCCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAATTAACAATGTATTATCATCTATTTATCCATCCACCCATCCATC  500

seq1  CACTTGCCTATCCATTTTCAATCTGACCACCCATCAATCTACCCAATACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGCCTATCCATTTTCAATCTGACCACCCATCAATCTACCCAATACC  550

seq1  CATCCATCCATCCATCCATCCACCCACCCATCCATCCATCCATCCATCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCACCCACCCATCCATCCATCCATCCATCCA  600

seq1  TCCATCCATCCATCCACCCACCCATCCATCCATCCATCCATCCATCCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCATCCATCCACCCACCCATCCATCCATCCATCCATCCATCCATC  650

seq1  CATCCATCCATCCATCCAC----CCATCCATCCATCCATCCATCCATCCA  695
      |||||||||||||||||||    |||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCACCCATCCATCCATCCATCCATCCATCCATCCA  700

seq1  TCCATCCATCCATCCATCCACTCACCCATCCACCCATCCATCCATCCATC  745
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCATCCATCCATCCATCCACTCACCCATCCACCCATCCATCCATCCACC  750

seq1  CATCCATCCATCCATCCAT----------------------------  764
      || ||| ||| ||||||||                            
seq2  CACCCACCCACCCATCCATCCATCCATCCATCCATCCATCCATCCAT  797

seq1: chr7_149103161_149104149
seq2: B6Ng01-201B20.g_66_1052 (reverse)

seq1  CAGTTACAACAGACACACACACAAATAAATAAACAAACAAATTCAAATTT  50
      |||||||| ||||||||||||||||| ||| ||||| |||  ||||||||
seq2  CAGTTACATCAGACACACACACAAATTAAT-AACAACCAA--TCAAATTT  47

seq1  TTAAAAGTTAAAGAGAATAAAAAGACATCCAGGGACAAGAAAATATTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTAAAGAGAATAAAAAGACATCCAGGGACAAGAAAATATTTGC  97

seq1  AAATTA-CCAATCAGATAAAGGATTTTTATGCAGAATGTACCAAGAATTC  149
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATTACCCAATCAGATAAAGGA-TTTTATGCAGAATGTACCAAGAATTC  146

seq1  CTTATACCC-AATAACAAGAAAATCAACAGCTTAGCCAAATGGGCAAAAG  198
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCCAAATAACAAGAAAATCAACAGCTTAGCCAAATGGGCAAAAG  196

seq1  ATGTGGACAGAAAAGAGCTGTGCATAGGGGCACACACTTGTAATCCCAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACAGAAAAGAGCTGTGCATAGGGGCACACACTTGTAATCCCAGC  246

seq1  ACTGCGGAGGTAGCAGCAGGAAACTCATGAGTTCAATGTCATTCTCTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGAGGTAGCAGCAGGAAACTCATGAGTTCAATGTCATTCTCTGCT  296

seq1  GCCTGTCCTTCAAGCTGTGGATAAATATTCCGTTTAGTGACTTGGTCCAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCTTCAAGCTGTGGATAAATATTCCGTTTAGTGACTTGGTCCAG  346

seq1  CTTCATCCACCAAAGCCCAGATTTGAACGATAGCACTATCATACCTGACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCACCAAAGCCCAGATTTGAACGATAGCACTATCATACCTGACC  396

seq1  ACTTCTAACACAAAACTGTCCCTGCTTTCTCTTGTGTCTCTGGGAAGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTAACACAAAACTGTCCCTGCTTTCTCTTGTGTCTCTGGGAAGCCT  446

seq1  CGGAAGTCCCACCCTCCCCAGCAGAATTGCTCCTCTGTTTTGGCACTTAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGTCCCACCCTCCCCAGCAGAATTGCTCCTCTGTTTTGGCACTTAG  496

seq1  GTTTCTGAGGCTGGTAGTCTCAACAACGCCATGTCACAGAATGAGTCAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGAGGCTGGTAGTCTCAACAACGCCATGTCACAGAATGAGTCAGT  546

seq1  CATGTCTGCCCCAAATCTGTGTGCTGAAACCCTGGCTCCTAACACCTCAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGCCCCAAATCTGTGTGCTGAAACCCTGGCTCCTAACACCTCAA  596

seq1  CATGTAGCAGTATTTGGAGGCAAATTGAGGTGGTTTGAGTGAGTGTTGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCAGTATTTGGAGGCAAATTGAGGTGGTTTGAGTGAGTGTTGAG  646

seq1  TTCCCCATAGACTCTGGAATTTGCACACCTGATGCCCAGTTGGCATTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCATAGACTCTGGAATTTGCACACCTGATGCCCAGTTGGCATTGCT  696

seq1  GTCTGGGGAGGTTCAGGAGGTTCAGCCTTGCTGTAGGAAGTAGCCAGTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGAGGTTCAGGAGGTTCAGCCTTGCTGTAGGAAGTAGCCAGTAG  746

seq1  TGTTGAGGCTTTGAGGTTTCAAAGTATGGTACCACCCCCAATTCTCTTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGCTTTGAGGTTTCAAAGTATGGTACCACCCCCAATTCTCTTTC  796

seq1  ACATTGCTATCATGGACTCTTACCCATCTGGAACCAGAAGCCAAAATAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCTATCATGGACTCTTACCCATCTGGAACCAGAAGCCAAAATAAA  846

seq1  CTCTCTCTTCATTAAATTGCTTAGGTCACAGTGTTTTATCATAGCAACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTCATTAAATTGCTTAGGTCACAGTGTTTTATCATAGCAACAG  896

seq1  AAAAGTAACCAATGCGTGTGTAATTTTTTTCCTTTATCCCCCCCTATGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAACCAATGCGTGTGTAATTTTTTTCCTTTATCCCCCCCTATGCC  946

seq1  TCTTTGTGAGCCCCTTCAGTGGAGGGGTGTTACAAGAATTC  989
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGAGCCCCTTCAGTGGAGGGGTGTTACAAGAATTC  987